>NC_000854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 786657 25 100.0 39 CGATTAAACA ......................... GTAGACGCCTGCACGGTTCAGCAAATACACGGCATCCTG 786721 25 100.0 38 CGGCATCCTG ......................... AACTGGAAGAGGGGGAGTAAGAGAGCGTTCTGGGGCTA 786784 25 100.0 37 TCTGGGGCTA ......................... GTAGACCTGGCCGTCGAGGTGTATCTCCATGCAGCCC 786846 25 100.0 40 CATGCAGCCC ......................... TTAGAAGCCTATTAGAGCAGGGCGTGGACGATGGCTCGAT 786911 25 100.0 38 ATGGCTCGAT ......................... ATAACCTCGGTGCCAACGCGTTCGCCGTGAATGCTGGC 786974 25 100.0 41 GAATGCTGGC ......................... GAGAACCTGTAGCGCTCGAGCCTCGCAGCCGCCCTAACGGC 787040 25 100.0 40 CCCTAACGGC ......................... AAGAGAATTTGCGCCGATGAGGCGGGCGAGGGGTGACGGT 787105 25 100.0 39 GGGTGACGGT ......................... CTTCAGGTCTGCAATCGCCGCCCTGAGGTTCTGAATATC 787169 25 100.0 41 TCTGAATATC ......................... ACCCGCCGGCGGCCTCCTCGGCGGCATAGGCTGCACAACCG 787235 25 100.0 38 TGCACAACCG ......................... GGGAGACTGCTAATCCGGAGGAGGCCCCGTGTGCAAAA 787298 25 100.0 37 GTGTGCAAAA ......................... TCCTAACCGGCGGCCTCCGTATTATCCGGGGCGGCGG 787360 25 100.0 39 GGGGCGGCGG ......................... CTGGTTATAGTGAGGCCCTCCGGAGTCTCTATCACAACC 787424 25 100.0 37 TATCACAACC ......................... CTTTACGCTGCCTTTCTGGCGGGGGTCCTGAGCCAGG 787486 25 100.0 42 CTGAGCCAGG ......................... TTACGGCATAGGGCTAGACCCTGCTATGAGCGGGGCACCGAC 787553 25 100.0 38 GGGCACCGAC ......................... CTTACCACCACCATTGGAGCCACCCCAGAGCTGCCTGG 787616 25 100.0 38 AGCTGCCTGG ......................... GATTGCATAGGCGATATACCCGAATCCCAGGTCGGTAA 787679 25 100.0 47 AGGTCGGTAA ......................... AGGAGGCGGAAGTACGAGATAGTTGTTGGGCCCGGAGATGCCGGCTA 787751 25 100.0 39 ATGCCGGCTA ......................... TCCTGGACCTCCGCCTACCCCGCGTCCTAGTCTCCCGGG 787815 25 100.0 40 GTCTCCCGGG ......................... TGGACCCACAAGAAGCTGGTGAAGAGCATTATGGAGTCAA 787880 25 100.0 40 ATGGAGTCAA ......................... CCACCGCCTGAGCTCCCTCTCCAGCTCGGGGTCCACCTGG 787945 25 100.0 42 GTCCACCTGG ......................... ACCACGACGGTCTCCTCGCCCACGCCGCAGTAGTAGTCCGTG 788012 25 100.0 44 GTAGTCCGTG ......................... TGAAGAAGCAGCCTAGGCCTATACTAGTCTATGAGCTCTCGAGG 788081 25 100.0 42 GCTCTCGAGG ......................... TTATGAGGTGTGGGAGCGTGGATGGTGAGGTTGTTATAAAGT 788148 25 100.0 39 GTTATAAAGT ......................... AGTGGGCAAGCGGATAACATCTCTATAGAGAGGTCTACG 788212 25 100.0 46 GAGGTCTACG ......................... CCACCTGGCGAGCCGCCCACCACCCTGCGGCATACGCAGCGCCTGG 788283 25 100.0 46 CAGCGCCTGG ......................... TCGAGCACTTCCAGGCGGCTGGCCTTGCTAGGCTTGAGAACGGCAG 788354 25 100.0 42 AGAACGGCAG ......................... GCGGTGGTTGTGCTAGCCTTCGCATTCGCCCTCTCGGGCCCC 788421 25 100.0 39 CTCGGGCCCC ......................... CTCTTTCTCGAGCACCAGCCTGCCTTCGGAGTCCATAGC 788485 25 100.0 42 AGTCCATAGC ......................... TTCACAGTCCACGCCTCGCAGGTCTACCATCTAGTCGATATT 788552 25 100.0 39 AGTCGATATT ......................... GCCGCGCTGAACGCCTACTTGCCGCCTGGCTTCGAGGCA 788616 25 100.0 40 CTTCGAGGCA ......................... ATCACAAAAACGTGAACGCGCCCGCCCGGCTACAGCTTCT 788681 25 100.0 40 TACAGCTTCT ......................... CCTCACGTACAGCCACATGGTCCCCAGGCCAGCCAGGACG 788746 25 100.0 36 AGCCAGGACG ......................... TTACGGGTGGTGTAACTAGAAATAACTATGAAGATA 788807 25 100.0 42 TATGAAGATA ......................... GAAGCAACTCAGAAGAGCTTCCCTCTTGACTCTAAAGCCCTT 788874 25 100.0 41 TAAAGCCCTT ......................... ATGTGCATGGAGTGGGCATCAGAATTAATGAGATAATCAAG 788940 25 100.0 40 GATAATCAAG ......................... CTCGGTTACGGCGTTAGCCCCGCCGTTTGCATTGACAAAC 789005 25 100.0 38 ATTGACAAAC ......................... GTTGCCCTAGCACCCCTGCTGGCCCTGCTCCTAGTACT 789068 25 100.0 38 TCCTAGTACT ......................... TACAACTTCCTGAGGTGGCTCGCCGCCTACGGCCCCGT 789131 25 100.0 41 ACGGCCCCGT ......................... TGCAGCCAGCTTTACAACGCTGATCCTCTTCTCACTCCTAA 789197 25 100.0 40 TCACTCCTAA ......................... GTATATAATGTCGGGGGCTATCCCGCTGCTCATATCCACG 789262 25 100.0 44 CATATCCACG ......................... CTGGAGCGCCGGGAGCTCAAGAGGGACGGCAGGCGCAGGGCGAG 789331 25 100.0 GCAGGGCGAG ......................... ACGGTGGGGC ========== ====== ====== ====== ========== ========================= 42 25 40 GCATATCCCTAAAGGGAATAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.60,-4.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [377,137] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1519912 30 100.0 41 AACTCAACGG .............................. TCAGTTCCCCTGCTTTCTGGATTGTTAAGCGAGGATCTTCC 1519983 30 100.0 36 AGGATCTTCC .............................. TCATACTCATCCCTCCCTCAAACCTTCAAATTGTCC 1520049 30 100.0 35 CAAATTGTCC .............................. CCTGACGGCAAAATCGTTTTCCGCACACGCATTGA 1520114 30 100.0 36 CACGCATTGA .............................. ATCTTTCTAATCTTATAGGTTAGAAACGGCTTCTAA 1520180 30 100.0 36 CGGCTTCTAA .............................. AGGACTTCTTGTTGTAGTTTGCGGAACATATCATAC 1520246 30 100.0 36 CATATCATAC .............................. GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC 1520312 30 100.0 36 ATCCTTCGTC .............................. TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA 1520378 30 96.7 TACGCCGACA .........A.................... GCTCCTCCCT ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [922,204] Score: 0.18/0.18 # # Final direction: R [1.23,4.5 Confidence: MEDIUM] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 369170 30 100.0 37 AACTCAATGG .............................. AGACAATCGTGGATCAGGTCATCAATGCCCTGAATTA 369237 30 100.0 37 CCCTGAATTA .............................. ACTTGTGGAGATTGAGGAACATCTAGGAAAGAACATC 369304 30 100.0 36 AAAGAACATC .............................. AGCGATAACATTCAATCCTTCGACGAGGTACACCAA 369370 30 100.0 37 GGTACACCAA .............................. TAATCTTGTCTGTAGGATCCTCTGAAAACCCTCTCTG 369437 30 100.0 39 ACCCTCTCTG .............................. GTGGAAGAGTCCGCAGGAAAAGACAGCGCTGGGTAGGTA 369506 30 100.0 37 TGGGTAGGTA .............................. TAGGTGTCTGAAACCGAGTCAATCAGTGCATTGTCGA 369573 30 100.0 37 GCATTGTCGA .............................. CAGGAGAGCCATTTTCTGAGTATTTCGCAAGGAAGAT 369640 30 100.0 CAAGGAAGAT .............................. AGTGATCCTC ========== ====== ====== ====== ========== ============================== 8 30 37 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [625,174] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1779940 30 96.7 37 TGTGGTCATG ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 1780007 30 96.7 37 TGGCGGGCGC ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 1780074 30 100.0 36 AACAGAAGCT .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 1780140 30 100.0 37 CTCTTCTTCG .............................. AGAAAGTAGTCGACAAGTTCGTTGATTGTCTCGTCGC 1780207 30 100.0 36 GTCTCGTCGC .............................. AGAGCTCTCCCGGGCCGTACCATCCAGGCCACCCCA 1780273 30 100.0 36 GGCCACCCCA .............................. TACAGAACATTGCACTGGAAGAGAAGAAGCAGGAGA 1780339 30 100.0 37 AAGCAGGAGA .............................. AGACATCTCGATCCTGATGAAGTAGGAGGGATACTTA 1780406 30 100.0 37 GGGATACTTA .............................. AAATCAGGATTGAACCTGACGTAGAAGCTTTGTACAA 1780473 30 100.0 37 CTTTGTACAA .............................. ACTTAAAGGAGGCAAAAAGACAGGAAAGAAGGGACGG 1780540 30 100.0 36 GAAGGGACGG .............................. AGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 1780606 30 100.0 36 CGAGGAAACA .............................. AAGGAACTCAGGACGATTCTCTGGATCGGTCTCAAG 1780672 30 100.0 CGGTCTCAAG .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [201,636] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 409364 30 96.7 35 ACGAAAACTG ....................C......... TTTGGGAAGAGGAGGGAGAACATGAGGATAAGTGA 409429 30 100.0 37 GGATAAGTGA .............................. TAATCAAAATGTATCCAGACGGAACATCTAAAGAATT 409496 30 100.0 37 CTAAAGAATT .............................. TTCCAGTCCAACCGTCGACTGAGTGTGAATGACTCCC 409563 30 100.0 36 AATGACTCCC .............................. CACCCGTGATGTCTATCGTGTTGCCTGTCGTTACCG 409629 30 100.0 36 GTCGTTACCG .............................. GCGTTTCCACTCGTATCTATCGCTCTCACACGGAAG 409695 30 100.0 42 CACACGGAAG .............................. TTGTGCCTGTAAAGGGGACAGTAGATACTGAAAGTTTATATT 409767 30 100.0 35 AGTTTATATT .............................. CCGACAGCGAATCAGCGAATCCCCACGATGGTGCG 409832 30 100.0 39 CGATGGTGCG .............................. AGGTGCAATCGCAGGCATCTGGAAGCTCCAGAACAAAGG 409901 30 100.0 36 AGAACAAAGG .............................. CAGAGTAATGAGAGGAGTCATATTTGAAATCGATGA 409967 30 100.0 36 AAATCGATGA .............................. CCGGAAGTAGTAGGGTTCGTCGCCGGGCTCTGTGAT 410033 30 100.0 36 GCTCTGTGAT .............................. GTCTGAACTCTGCCTTGAACAATGCCTCCGAAGAAT 410099 30 100.0 36 TCCGAAGAAT .............................. CATTTGTAGCACTATCATAAGTCAGAGTTTTCCCCG 410165 30 100.0 36 GTTTTCCCCG .............................. AGGAAACGAATACGAAATCTGGATAAGAGAAGCAGA 410231 30 100.0 35 GAGAAGCAGA .............................. TATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 410296 30 100.0 38 TCGAGTCTGT .............................. TTTGAGCCTGATCGGGATAGCAGAGAACTTCACGTGCT 410364 30 100.0 36 TTCACGTGCT .............................. GTGTCCTTCAGTAGCAAATGGAGCTACAGGAAGAGC 410430 30 100.0 37 CAGGAAGAGC .............................. ACTTGAAAGTGCTTGAAAAAGTTGTGGAATAGCGCTA 410497 30 100.0 35 AATAGCGCTA .............................. TGCGAAGGATTGTGGTAGAGCATATGAAGTATATA 410562 30 100.0 37 GAAGTATATA .............................. ATCCATTCACAATCCCGACATTGTGAAGCCAACCACG 410629 30 100.0 36 GCCAACCACG .............................. AAGTACACATCAACCATTGTCCCTTCTGTTACCTGG 410695 30 100.0 35 TGTTACCTGG .............................. TCGATGCGATGGGGTGATAGGGTGCTTCGATGGAA 410760 30 100.0 37 TTCGATGGAA .............................. AAGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 410827 30 100.0 37 CGAGGAAACA .............................. GAAGAAAGGAGGATGAGGAAGATGGGAAAAGAGAACC 410894 30 100.0 AAAGAGAACC .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [165,658] Score: 0.18/0.18 # # Final direction: F [4.87,0.59 Confidence: HIGH] >NC_000854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 717248 24 100.0 39 ACCATGTGCA ........................ AGCATCCGAGGGGCCCCACAATGAGGCTGGGGAGGGGTA 717311 24 100.0 41 GGGAGGGGTA ........................ TGGGCCCAGGTCCTGCTGTGACAATAGGTTTCCGTTGCTGT 717376 24 100.0 42 CCGTTGCTGT ........................ ATCTATAACATCATCGCGTGCAGCAGGGGGCCAGAGGACTTC 717442 24 100.0 45 AGAGGACTTC ........................ GGTCCTGGTCTTGCTCCCCCGCGACTACTGGCAGCTCTTCCAGGG 717511 24 100.0 41 TCTTCCAGGG ........................ TGAGCCTAGCCAGCTCGGCCCTGTTACGGGCCTCAACCTCA 717576 24 100.0 38 CTCAACCTCA ........................ TCGCCATGTAGTCGTACATCGCCCTCTTCAGCACGTCA 717638 24 100.0 37 CAGCACGTCA ........................ CCGCCGAAGAGGGCCCAGCCTATGATTATTCCGAGGC 717699 24 100.0 41 ATTCCGAGGC ........................ TCTTCATCTACAACTTTTACAAAAAAGCATGGGCTCACGGG 717764 24 100.0 41 GGCTCACGGG ........................ TGTGCTAAGAGCCCCGAGAAATGTGTAGCCTCGGAGGGCCC 717829 24 100.0 52 CGGAGGGCCC ........................ ACGTCGAGGTTAGGGTTATGGTGAACGCCCAGGGGCAATTAGAGTATACCGA 717905 24 100.0 43 AGTATACCGA ........................ AAGGCAATACTCAGGATAGACAGGTACGCCAGGCAGGAGGTAG 717972 24 100.0 41 CAGGAGGTAG ........................ CGACTGTGGCTATAGCCAGGGCACCGACGACACCGTACTTC 718037 24 100.0 38 ACCGTACTTC ........................ CCTCTCCCCCTACACGACAACGAGGAAGACGGGGCCCT 718099 24 100.0 41 ACGGGGCCCT ........................ GCTAAGCAGTGCATACGACACTTCCTTACCCTGCCGATCGA 718164 24 95.8 44 TGCCGATCGA ......C................. ATCGCATAAGGGCTACAGGAATCCACGTAGAGTTGCTAGGGAAA 718232 24 95.8 39 GCTAGGGAAA ......C................. GCTGTAGAGGGCGGCGTAGTGGAAAGCCCGCCTCCGCCA 718295 24 95.8 49 GCCTCCGCCA ......C................. ACAAACTGGTTTTCATGTATCTGTGTCTCTGTAGCCGTATCAATAGCAT 718368 24 95.8 42 TCAATAGCAT ......C................. CTTTCCCGTCCACTCCAACGAAATCCACGATAGATAGTATTG 718434 24 95.8 43 GATAGTATTG ......C................. GCGGCGCGGCAGTAGGAGGTCTAGCATGACCCCTATGAGGACG 718501 24 95.8 42 TATGAGGACG ......C................. CAGAATTTCTGGGGTTTCAGCTTATAACGGCTGGGCGGCAGA 718567 24 95.8 42 GGGCGGCAGA ......C................. AGCTCGTAGAGGTCAGACTTGTCCACCCTTAGATCGGCCGCC 718633 24 95.8 44 ATCGGCCGCC ......C................. AAGGCAAAGCCGATTGTCAAGCCCAAGCCCCCGGCAATAAAGAA 718701 24 100.0 47 CAATAAAGAA ........................ TGGGTTAGGTGATGCTGTAAGGATGGTAAGTTGGTTCCTCTTGACTA 718772 24 100.0 46 CTCTTGACTA ........................ GGCAAGAAATAACACCACAGCACCCAGACTTAATATAAAAACTGCA 718842 24 100.0 41 AAAAACTGCA ........................ AGCATATTCGCAACTTCCTCAAGCGCTTCCTTCGCCTCTTT 718907 24 100.0 43 TCGCCTCTTT ........................ TAGGGTCCTCGTGCTACTGGAACCCACTCCTAGGGAGCTCCGG 718974 24 100.0 GGAGCTCCGG ........................ TGGTTTGTAG ========== ====== ====== ====== ========== ======================== 27 24 42 GAATCTTCGAGATAGAATTGCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [2,83] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 396568 30 100.0 36 AACTCAACGG .............................. GAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAA 396634 30 100.0 35 TACTGGAGAA .............................. CCAGAGAAGGAGGAGTGTTTTGGGATTTTGCATGT 396699 30 100.0 37 TTTTGCATGT .............................. TGATCCAGACGGCATTCGTCCTGTACTGAGCTGGAAG 396766 30 100.0 37 GAGCTGGAAG .............................. TCAACCTCAAGCACCATTTGCCCGTAGCGCGTTGACA 396833 30 100.0 37 CGCGTTGACA .............................. ACTAGTATGAGCTACTACAATCCAACCACTGCACCTA 396900 30 96.7 39 ACTGCACCTA .........G.................... ACGTGAGCGCGTTTCTTTGCCATTTTCAGTATCGTATTT 396969 30 96.7 36 TATCGTATTT .........G.................... ACCTGTGCTAAATTCTCATCCCAGTATCGGATCTCG 397035 30 96.7 TCGGATCTCG .........G.................... TCTAAACCAG ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [628,174] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_000854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1277299 24 95.8 38 AACGACTACC .................G...... CTCCGGAGCCTCGGCTGTAACCGAGTCGGCCATACTCA 1277361 24 95.8 40 GCCATACTCA .................G...... TAAGACTAGCTGGATGGAGGCCATGCTGGGGGCCACCATA 1277425 24 100.0 45 GGCCACCATA ........................ CCGAGGGTATATGGTTCGACGAAGTCGACAAATGGGCGAGGGCGG 1277494 24 100.0 43 GCGAGGGCGG ........................ AGCGGGGTGAGTAGCCGTGCCTTGGGCTGACTGCAGACTATGT 1277561 24 100.0 38 CAGACTATGT ........................ ACCTAAGCAGCTTCGACGTAACCGTGTTCACGTGCAGA 1277623 24 100.0 37 CACGTGCAGA ........................ GGCTCCATGGCTGGGCGGAGAGGGCAAGGTGGAGCTG 1277684 24 100.0 41 GGTGGAGCTG ........................ GCCAGCCGACTTCCGCCTGCTAGGCCCCTTGGTGGGGTCTG 1277749 24 100.0 39 GTGGGGTCTG ........................ TCATAGTCTGGGGGTTCTGGTTCCTCCTAGGCGTCATAA 1277812 24 100.0 45 GGCGTCATAA ........................ TAGACGGAACTAGCGCGCTGAGGATCGAGCCACTCTTCAGGGTAG 1277881 24 100.0 47 TTCAGGGTAG ........................ ATTCTCTGGCTACCTCTTCGAGCGCTTCCTTCGCCTCTTTATCCACC 1277952 24 100.0 38 TTTATCCACC ........................ CTCTTATATATTTAATCAGTATAACCCTGACAAGCTCA 1278014 24 100.0 40 GACAAGCTCA ........................ CCTCTAGTGAGCGTGGAAATTCCCAAAACACCATCAGACT 1278078 24 100.0 41 CCATCAGACT ........................ GCGTATGGGGAGCGGGCTGGGCCCGCGGTCATGCTTGCGCT 1278143 24 100.0 38 TGCTTGCGCT ........................ CCAGGCACTTGTGTTAAGGTTCTCGAAGCTGAGGATAG 1278205 24 100.0 42 CTGAGGATAG ........................ GATTCGCCCAACTGGGCGTGGAAGCGGCTCGGCGCCTTCGTC 1278271 24 100.0 42 CGCCTTCGTC ........................ CAGCACGGTCAGCTGGAGAGGCCAGTAGAGGGGGCCGAGCAG 1278337 24 100.0 38 GGCCGAGCAG ........................ CTGTAGGGCTAGGATCGAGAGGTTCAGCAAGATGGTGT 1278399 24 100.0 40 AAGATGGTGT ........................ GAGAGGCTGGGCCTCACTGGTAGGGTCGTTATAGTTTCCG 1278463 24 100.0 ATAGTTTCCG ........................ TGCACATGGT ========== ====== ====== ====== ========== ======================== 19 24 40 CTTGCAATTCTATCTCGAAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [256,2] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 412 30 100.0 38 NNNNNNNNNN .............................. TCTGTGATCTGTTAACGGGGACATCCACACCCAAAATC 480 30 100.0 38 NNNNNNNNNN .............................. ACTGTCGGAGATGTTCTGCTGTGCATCGTCGAGAGTTT 548 30 100.0 37 NNNNNNNNNN .............................. ATATAAGCCTTTTCCAGTCTTCGGGGGACATTTCCCA 615 30 100.0 37 NNNNNNNNNN .............................. ATGCGAGCACTGTCCTCTCCAACATCCATATACACCG 682 30 100.0 37 NNNNNNNNNN .............................. CATACTCCAGCATCAAGCAACTTGCTGGCGAAATTTC 749 30 100.0 36 NNNNNNNNNN .............................. ATCCATATCAACGTTGCATATTCTCGTTGATAAAAA 815 30 100.0 37 NNNNNNNNNN .............................. GCGACAAGCCCACGTTCAGGCACGAGGTGTTCCCTGA 882 30 100.0 37 NNNNNNNNNN .............................. AAGTTTTACCTTTTCTCAGACAACTTCAACTGGAAAA 949 30 100.0 37 NNNNNNNNNN .............................. TCGATTATTTCTTTTACAAAGACATGCGATCATACAA 1016 30 100.0 35 NNNNNNNNNN .............................. TATACGTTGTAGAAATCGCAAAGGTGGTGATGTTA 1081 30 100.0 36 NNNNNNNNNN .............................. TCTCGAATCCGATATAATCATATTTCCTTATTATAT 1147 30 100.0 37 NNNNNNNNNN .............................. CCGCATCTCGTAGGTATTGCTTGCCTTCTGTTCCCTT 1214 30 100.0 35 NNNNNNNNNN .............................. TAAACTTGTAAATCCTTTTGAAGACTTAGAACAAC 1279 30 100.0 36 NNNNNNNNNN .............................. GAAACGCCCGCAAACGCTCATCACAAGCCCGTTTCC 1345 30 100.0 36 NNNNNNNNNN .............................. TTGAGTATAAAATCTTCTTCTGATAATGACAAAACA 1411 30 100.0 37 NNNNNNNNNN .............................. TGCTTCTATTACTCTTTGTAGCACGTTCGTGAACTCA 1478 30 100.0 36 NNNNNNNNNN .............................. TCGATAATCTCAGATGCCTCGCCTCAATTTCAATTG 1544 30 100.0 36 NNNNNNNNNN .............................. CTCCACAATGAAAAGAATAGATGGTAAGGTGTGCTT 1610 30 100.0 37 NNNNNNNNNN .............................. CTACTATCTTCTATATATATATTTTTGTTTTTGTTTT 1677 30 100.0 38 NNNNNNNNNN .............................. CTATTTCCCTCTGCCGTCTCTTCGAAATGATCACCTCT 1745 30 100.0 38 NNNNNNNNNN .............................. TGTGAAGGCGTATGAGGTGGAGGATATTCCTGCAATTG 1813 30 100.0 37 NNNNNNNNNN .........A.................... TTTTTCCAGCATCTTCTTCACGAAGTACGTCTTCATC 1880 30 100.0 36 NNNNNNNNNN .........A.................... GCGATGTTGCGAGAACGATGAAAGATTTGTATGAAC 1946 30 100.0 37 NNNNNNNNNN .........A.................... TTGTCGAACTCTTTGGTACTTCCATCCGGATACATCT 2013 30 100.0 37 NNNNNNNNNN .........A.................... GAGTAGTACAGAGGAGAGAGATGCAGATATCCACGAC 2080 30 100.0 35 NNNNNNNNNN .........A.................... CTCGATCGCTTGTGGTATCTCTGTCTGTGCGAGCT 2145 30 100.0 39 NNNNNNNNNN .........A.................... TTGTGATGATGTCGCCAAGCTTTAGGGGGACATCTGTTT 2214 30 100.0 36 NNNNNNNNNN .........A.................... CTGATCTAGCCGTCCGGCCAGTCACAGGTTGAGATA 2280 30 100.0 37 NNNNNNNNNN .........A.................... ATGTATTGCAAGGAAAAGCAAAAATAAGATTCGACAG 2347 30 100.0 37 NNNNNNNNNN .........A.................... TCGAACTCGAAGAGGCCTATGCACCTGTCCAGCCTAT 2414 30 100.0 36 NNNNNNNNNN .........A.................... ATCCTCCTTACTTTGGCCGACACCGTTCGTCCGTTT 2480 30 100.0 36 NNNNNNNNNN .........A.................... CTTCAAGCCATACTAATATTGCGTATTCTCTTCTCA 2546 30 100.0 37 NNNNNNNNNN .........A.................... AAAAGCCTACGAAGGGCTTCGAGTACCACCAGCTTTT 2613 30 100.0 37 NNNNNNNNNN .........A.................... GGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCT 2680 30 100.0 37 NNNNNNNNNN .........A.................... CAAGGGGAGGATGATACTGAATGGATAGGGGAACTCA 2747 30 100.0 36 NNNNNNNNNN .........G.................... ACCATTCATCCATTACAACCTCTTTGCCTCTAATTT 2813 30 100.0 36 NNNNNNNNNN .........G.................... TGATGTCTTCCCATTGTTTCGTGTTGTCAAACACCT 2879 30 100.0 37 NNNNNNNNNN .............................. TAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCA 2946 30 100.0 35 NNNNNNNNNN .........A.................... AGTTGGACGACGATCTTGTATTCATAAATGTTGTT 3011 30 100.0 35 NNNNNNNNNN .............................. TAAGACATTCTTTCGCTAAGAAAATCTAATAGTTT 3076 30 100.0 1 NNNNNNNNNN ...................T...C.A...A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 41 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [413,51] Score: 0.18/0.18 # # Final direction: R [0.96,4.5 Confidence: MEDIUM] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1631790 30 100.0 36 CTCGGTTGGT .............................. ACAAGCGTTGTGCCATCACTACTTGTTCGAAGCCCA 1631856 30 100.0 35 TCGAAGCCCA .............................. AGACGTTCCTGTCGCTGGTAGTGTCGAATATTCGT 1631921 30 100.0 36 GAATATTCGT .............................. TTGTGTCTGAAGAATGAGCATCGAGTTCTACACGAT 1631987 30 100.0 TCTACACGAT .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 4 30 35 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [82,647] Score: 0.18/0.18 # # Final direction: F [4.5,0.55 Confidence: HIGH] >NC_000868 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1760062 30 100.0 37 NNNNNNNNNN .............................. TCTATCTCGGAAAGCAGTAATCTTGCTAGAGTAGTCT 1760129 30 100.0 37 NNNNNNNNNN .............................. CTAACACAATTGTCTGAAAGTTACTGTAAATTCCACG 1760196 30 100.0 37 NNNNNNNNNN .............................. GCCGAAAGGCCGGCGCTGAGGATCTGTTTCATCGGTT 1760263 30 100.0 46 NNNNNNNNNN .............................. CGGGAGTGTTGAGACGGTGAGGATATCACGGGTGGACACTGGGAAT 1760339 30 100.0 37 NNNNNNNNNN .............................. GGAACCCCTAGGGGGTCTAAGGCGCCGGGGCCAACGC 1760406 30 100.0 38 NNNNNNNNNN .............................. CCCGTCTGATCTACGTAGAATCTGCGTGTTGCCCCTGT 1760474 30 100.0 38 NNNNNNNNNN .............................. CGTTGGGCTTCACCTCAACCGGCTTCACGTCTGTTGGA 1760542 30 100.0 38 NNNNNNNNNN .............................. ACATTTTTTTGCAAAAATTTTTCAAAAAATCGGCCTAA 1760610 30 100.0 37 NNNNNNNNNN .............................. TGAGCCTTCATCAACTTCATCAACTTCATCTTCAAAT 1760677 30 100.0 37 NNNNNNNNNN .............................. TAATTGTTACATGGTGATGGCGTCTTGGCGAAATGGA 1760744 30 100.0 36 NNNNNNNNNN .............................. CCACTTAAATTCCGCCGAAGCTATTTCGAATATCTT 1760810 30 100.0 37 NNNNNNNNNN .............................. GAAATCATTGAGGGACTCGTCGGCCCAGAGGTCGGAA 1760877 30 100.0 37 NNNNNNNNNN .............................. TGGCGAGCTTTCCCCTGCCGGCCCTCGCTATGAAGAG 1760944 30 100.0 38 NNNNNNNNNN .............................. TCAACTTACGCGCAATACCATCAAGAACACTATTCTCC 1761012 30 100.0 42 NNNNNNNNNN .............................. CTATACCGAGTTCATATAAGAGGTTCACTAAGAAAGCAATAA 1761084 30 100.0 36 NNNNNNNNNN .............................. TTGCTCCCACATTGAGGAAGTTAGTTGGGAGTGCGA 1761150 30 100.0 37 NNNNNNNNNN .............................. TCGATCCGCCCGGGCTGGTATATCTTCGCCGACTTGA 1761217 30 100.0 37 NNNNNNNNNN .............................. CCGCAGTAGCCAGCTCTTGTCCGCCGTTGCCCCCTAT 1761284 30 100.0 37 NNNNNNNNNN .............................. GCAGTTCCAATTGCGAGTAAAGGCCCTCCGTTTCTTC 1761351 30 100.0 37 NNNNNNNNNN .............................. TTTTCTGATATAAACGATGTAGTGTTCGCTTAGGCTT 1761418 30 100.0 37 NNNNNNNNNN .............................. ACTGGCTCGATCGAAGGCTTAATCGTTGCAGATGCAT 1761485 30 100.0 40 NNNNNNNNNN .............................. CCTCATTCCAGTCCGTTCCCGAGAGGTTCGTCAGGGGCAG 1761555 30 100.0 38 NNNNNNNNNN .............................. GAGTTCCCGCTGACCCTCCTCGCCTGCACCAGTAACGT 1761623 30 100.0 37 NNNNNNNNNN .............................. GAAAATTAAAAGGCGGTTCATCGGCAACTTTGCACAT 1761690 30 100.0 39 NNNNNNNNNN .............................. TGTTGATTTTGAGCTTGAGAATATCAAGGATGCGCTCGG 1761759 30 100.0 36 NNNNNNNNNN .............................. CTCATCAAGTATGGAACAAACATACTTGCCTTTGGA 1761825 30 100.0 35 NNNNNNNNNN .............................A TAGTGATTTATTTAAGGACGTTTGTAGCTAGCTAA 1761890 30 100.0 1 NNNNNNNNNN .....G.C..A......GA.AG.ACAG... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 28 30 37 GTTCCAATAAGACTAAAATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [499,127] Score: 0.18/0.18 # # Final direction: F [5.86,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 132922 29 100.0 36 TGATTGCCCT ............................. TCAGGGAGGTAGGAGGGAGGTTCTCCTTGGATTTCT 132987 29 100.0 48 TTGGATTTCT ............................. TCTATTAAGTCCCATGCAGACCTACCAATACGTTCATAGTAAGGCCTA 133064 29 100.0 38 GTAAGGCCTA ............................. TTATGTTACAAAAGTTGGAGAGGAAGATTTAAAACTTG 133131 29 100.0 37 TTAAAACTTG ............................. TTTAATTCTAATGCCTTGTTTTTTACATCTTCTGGAA 133197 29 100.0 41 TCTTCTGGAA ............................. TGTCTTTAATTTCATCTCTATAGCTTCTTCTATTGCTTTAA 133267 29 100.0 37 ATTGCTTTAA ............................. TAATGTAAATTTAAAAATATAACGTTGCAAATAAGGA 133333 29 100.0 39 CAAATAAGGA ............................. TCAGTAGTTAAAACTTAAAGCACAAAACACCTTCATTCC 133401 29 100.0 43 CCTTCATTCC ............................. TGAAGTATTTTTATCTTTTGCGATATTTTCTATAATCTCATCA 133473 29 100.0 39 AATCTCATCA ............................. TTATTTTTGTTGTTTAAATCTATTGTGTATAATGTGGTA 133541 29 100.0 41 TAATGTGGTA ............................. CTTTTTGCTTCATTTTCATTTAAATTAACTATAAAACAGTA 133611 29 100.0 44 TAAAACAGTA ............................. CATGGAGCAAAACAACATATTGTTTTAATAGTGGATGATTTTTA 133684 29 100.0 38 ATGATTTTTA ............................. CGCATTACAGAATTTATATTATTTATATACTGTTTATG 133751 29 100.0 39 ACTGTTTATG ............................. CAAAACACCACCTTCAATAAACTTATCAATTTGATATTT 133819 29 96.6 48 TTTGATATTT ...............A............. TTGTATTAATTCCAGTTGTAATATTTGATAATGAGACATTAAAATCAG 133896 29 100.0 TTAAAATCAG ............................. CTTTATCTAATTTAACCCGCTTATGGTTTTAGATGAACCCCGCTCC ========== ====== ====== ====== ========== ============================= 15 29 40 ATTAAAATCAGACCGTTTCGGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [371,191] Score: 0/0.18 # # Final direction: F [1.55,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 236564 30 100.0 42 TGATTGTCCT .............................. GATATTATTAAACAACATAATCAGTGTAATTGTATAGATATG 236636 30 100.0 36 TATAGATATG .............................. ATTTGATGATTTGGTGGATTATACAAATAGAAATTA 236702 30 100.0 39 ATAGAAATTA .............................. TACTGTTAAATATTCAGATTTATTAATCAGTTATTTCCT 236771 30 100.0 38 GTTATTTCCT .............................. GATTTTCTTATGTTTAAAATCCTTATGAACGCTCGGAT 236839 30 100.0 ACGCTCGGAT .............................. TCTTTATC ========== ====== ====== ====== ========== ============================== 5 30 38 ATTAAAATCAGACCGTTTCGGAATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [396,1415] Score: 0.18/0.18 # # Final direction: F [0.5,0.18 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 237054 30 100.0 38 GGGAGAGCCG .............................. GATTGGATGAGGGATATATCCAAAACTCAAAAGGATTG 237122 30 100.0 37 AAAAGGATTG .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237189 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237256 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237323 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237390 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237457 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237524 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237591 30 100.0 43 TTGAGGGTTC .............................. TCATTTGCATCATTTGTGCTGGGTCTGGCTGACTCTGTGTGTC 237664 30 96.7 35 TCTGTGTGTC .............T................ TTCTTGGAATTGCTAAGTGGTTTATGCATAGTTGC 237729 30 100.0 37 GCATAGTTGC .............................. ATGAGATTCATTCTTTGATCGAGGGCGATAGAGGTTC 237796 30 100.0 39 ATAGAGGTTC .............................. GAATTTTCGCACACGCGCTACATCTAATAAACAGATTTG 237865 30 100.0 AACAGATTTG .............................. GATGAAAAGAA ========== ====== ====== ====== ========== ============================== 13 30 37 ATTAAAATCAGACCGTTTCGGAATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [886,389] Score: 0.18/0.18 # # Final direction: F [1.09,0.27 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 378 29 100.0 41 NNNNNNNNNN ............................. TTTGCTCCTGCATTAGATGGAGGAGCGTATGTAGCGTATTA 448 29 100.0 38 NNNNNNNNNN ............................. TTTTGCAGAGTTGTATTCTGGCAGTGCGGATATTATAA 515 29 100.0 38 NNNNNNNNNN ............................. AATCTAATACAAACAGTGAAGATACTGAATACTGCGGA 582 29 100.0 41 NNNNNNNNNN ............................. AACTGTCTCTTAACATATTCTGCAGTTTTACAACTTTCGAA 652 29 100.0 38 NNNNNNNNNN ............................. GCATAATTGATGAGGCTAATAGAATAGCACCTAATAGA 719 29 100.0 38 NNNNNNNNNN ............................. GATTAATGTAATACTTTTTTATAAATTTATAATGCAAA 786 29 100.0 41 NNNNNNNNNN ............................. GTAATTTCTACGACTTGGATTACTTCACGATGGAAATCAAA 856 29 100.0 38 NNNNNNNNNN ............................. GATAGAAGAATTTGATGCTTTATTTGGATGTTTGAAGA 923 29 100.0 43 NNNNNNNNNN ............................. GCAGCTTGTGGCGATACCTTCAAGTTCAAAATTTTTCCCCATA 995 29 100.0 41 NNNNNNNNNN ............................. GACTAACTTTAATTATATCCCTTTCAGCTTCCTCATCATAA 1065 29 100.0 39 NNNNNNNNNN ............................. GTAGAAATTGTCTCAATAACTGCGTTTGTTGATGGAACA 1133 29 100.0 39 NNNNNNNNNN ............................. GCAAACAGCATTATAACAATTGATAGACAGAAATTCAGA 1201 29 100.0 37 NNNNNNNNNN ............................. TATTGGTGAAGTAGTTGCTTATGACTTAGATAGTGGA 1267 29 100.0 42 NNNNNNNNNN ............................. TGACATAATTAAAGCATAATAATACTTTAACGCTTCTTTTAA 1338 29 100.0 42 NNNNNNNNNN ............................. TTATATCTCCCTCCTTAACCTTTTTTTATTTAACATTCCCAT 1409 29 100.0 39 NNNNNNNNNN ............................. TATCTACTTGGAACTACAACACTCACAGGTAAATCTAAT 1477 29 100.0 41 NNNNNNNNNN ............................. TAAGTTAAAACAATGGTTAATGTTAAGGGGGATTAAGCTGT 1547 29 100.0 42 NNNNNNNNNN ............................. TGACATAATTAAAGCATAATAATACTTTAACGCTTCTTTTAA 1618 29 100.0 42 NNNNNNNNNN ............................. TTATTACCACCCTCTTGCTTTTAAAAAGCTTTCTAATTCTTC 1689 29 100.0 39 NNNNNNNNNN ............................. TAATCCAGATTTGAATTGTTCCCAAGCATTACCGAGCCA 1757 29 100.0 41 NNNNNNNNNN ............................. TTTTTTATCGAAACCTTCTAAAATCATATCTCATCCCCCCA 1827 29 100.0 39 NNNNNNNNNN ............................. TCTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 1895 29 100.0 39 NNNNNNNNNN ............................. TCTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 1963 29 100.0 39 NNNNNNNNNN ............................. TCTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 2031 29 100.0 38 NNNNNNNNNN ............................. TCTATGTCTGTGATAGTTACAATATTATTTCCTATTTT 2098 29 100.0 1 NNNNNNNNNN ..............AA.....G..AA..C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 26 29 39 ATTAAAATCAGACCGTTTCGGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [379,91] Score: 0.18/0.18 # # Final direction: F [1.46,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1049449 29 86.2 44 ATATTGACAA ---..T....................... CCAATTTGGGCATTTCCCAACATAAACATATAATGAATCCATAC 1049522 29 100.0 40 GAATCCATAC ............................. CAGAAGTTTTTCTTGGACAAATCTTACAGGGTGTTGTCCC 1049591 29 100.0 37 GTGTTGTCCC ............................. CTTGTGTCCATTGTAAGCGTTAAAAATAATGCAAATT 1049657 29 100.0 42 AATGCAAATT ............................. CTATTTTATCACCCGTTTATGTTTTTTACGGTTAATACTATA 1049728 29 100.0 38 TAATACTATA ............................. CAACTACTTTGTAGATGATTTTTTAGAGGATTTGGAGA 1049795 29 100.0 47 GATTTGGAGA ............................. CGATACATAGTATTCTCCATTTTTCTTTTCAATAACTACATTACATC 1049871 29 100.0 42 ACATTACATC ............................. CTTGAGTGTGGAATTAGAAGAAATAAACTTTAGGAAAGGTTA 1049942 29 100.0 37 GGAAAGGTTA ............................. CATAAAATCTCTAACCTCTCCAGCGTTATCAAAAGTA 1050008 29 100.0 46 ATCAAAAGTA ............................. TTCGTTATCTGGTCTCATGTATGGTTCCAAAAACTTCAATGTGAGA 1050083 29 96.6 CAATGTGAGA ......................G...... TTATAGTCAT ========== ====== ====== ====== ========== ============================= 10 29 41 ATTAAAATAAGACCGTTTCGGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [646,374] Score: 0/0.18 # # Final direction: F [0.87,0.41 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1575519 30 100.0 38 TGATTGCCCT .............................. CGTAAATGGTTCGTCTTTATTGACTAAAAACACAGTTT 1575587 30 100.0 35 AACACAGTTT .............................. TGGGAAATATAAGTCAGAGATTGATGCTTTGGCAG 1575652 30 100.0 43 GCTTTGGCAG .............................. AAAAGATGTTGAGAGATGCATTTATTCATAAGAAATTTATTAG 1575725 30 100.0 36 AATTTATTAG .............................. TCCTTATGAAGTATTTAACTATGACGACATGAAGTT 1575791 30 100.0 39 ACATGAAGTT .............................. AAACTACCGTCTGCACAAACAGCTACCATTAATCTTAAT 1575860 30 100.0 43 TAATCTTAAT .............................. GATATTTCAGCAGATGTTTATCTGCTTCATTTAATTGAACCTC 1575933 30 100.0 43 ATTGAACCTC .............................. TGGAGGGATTTTCATTTTTTAAATTTGATAATGTATTTGAAGA 1576006 30 100.0 35 TATTTGAAGA .............................. AGTTTTCACCCCAAAAAACACTATTGTCCTTTCTT 1576071 30 100.0 42 GTCCTTTCTT .............................. TTTAATTAAGCTTAGATAATCTTGAATATTTTTTCTTGTAAA 1576143 30 96.7 41 TTCTTGTAAA ........C..................... ACACATATTGATAAGGTAGAAGTATCAGTAAATGGACATTT 1576214 30 100.0 38 ATGGACATTT .............................. CGCAATCATTAATAAATCCCAATACATCGATACAAAAA 1576282 30 100.0 GATACAAAAA .............................. AATTGTAATA ========== ====== ====== ====== ========== ============================== 12 30 39 ATTAAAATAAGACCGTTTCGGAATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [475,297] Score: 0/0.18 # # Final direction: F [1.28,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 428572 30 100.0 41 TAAGCCTCCT .............................. TAACATAACAAAAATTCATCAAGTGTTTTACATTTTATGTG 428643 30 100.0 39 ATTTTATGTG .............................. TTAATTCTATTTTTTATTTCAGTTTTGTCAATTTCTGAT 428712 30 100.0 40 AATTTCTGAT .............................. AATAATATAAGTTGGCCAATCATTTCTCGGATGGTCAACA 428782 30 100.0 36 ATGGTCAACA .............................. CGAAACAGATATATTAGGAAATTATATTGATGATAT 428848 30 100.0 38 TTGATGATAT .............................. TTTGGCAATTTATATAGCTCAATTGCGTATTCTTTCTT 428916 30 100.0 45 ATTCTTTCTT .............................. ATGAACTCTTTTAAATTATCTCTTTTACTACCCCTACAAATTCCC 428991 30 100.0 37 ACAAATTCCC .............................. TATTTACCTAATATTTTGATTAAATACTAAAAATTCT 429058 30 100.0 36 TAAAAATTCT .............................. TTTTTAGGTAGGATACTGAGGGCTGTAAGTTTTTTT 429124 30 100.0 46 AAGTTTTTTT .............................. TCAGAATTCTCATCTGCATATTGCTTCATTATTCTCTTTAACGTTA 429200 30 100.0 43 TTTAACGTTA .............................. GAGTGTGGATATGTTGAAGATTTTGGAGTTGATTATTGTGGTG 429273 30 100.0 38 TATTGTGGTG .............................. TTATAACATAAGATTTTTATGTGTTCTTTTTGTTTTCT 429341 30 100.0 38 TTTGTTTTCT .............................. ATACTCAGATTTTGTTGTATGATTTGCATCTTTATTTT 429409 30 100.0 36 TCTTTATTTT .............................. TTCGGTTATCAAAAAGTTTAAATTTATGATAGGAAT 429475 30 100.0 38 TGATAGGAAT .............................. TTTTTAACGAGAGTTTTCAGAGCATTTAGCTTTTTTGA 429543 30 100.0 GCTTTTTTGA .............................. TAAGCTTCAC ========== ====== ====== ====== ========== ============================== 15 30 39 GTTAAAATCAGACCGATTCGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [469,105] Score: 0.18/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 507264 30 100.0 48 TGATTGCCCT .............................. TCTGATTTTAACTACCGAAATTTTTATATATGGATTTATATATAAATT 507342 30 100.0 35 TATATAAATT .............................. TTTTATCCCTCCAAAAAATAAAAGAATAAATAAAA 507407 30 100.0 38 ATAAATAAAA .............................. AGTGTAAATGAAGATTTCTTAACTATATTGCAACAAGC 507475 30 100.0 32 TGCAACAAGC .............................. AATTCTCTACAGAAACTAAATACAAATGACTT 507537 30 100.0 39 CAAATGACTT .............................. CAAAACATGAGTGCAGAAGAGGCAAATAACATTCTACAA 507606 30 100.0 35 CATTCTACAA .............................. CCCCCGAAAAGGTTGGAAACTCAGCAAAACTAATC 507671 30 96.7 43 AAAACTAATC .............................T ATGGAACAAGAATGAGAATCTCTGGAGTGGATGTTATTAAAGT 507744 30 100.0 42 TTATTAAAGT .............................. CTTATTGCCTCTTCAAATCTATAAACTATAGCATCAACACCG 507816 30 100.0 38 ATCAACACCG .............................. TTTTTATTTTAATAATGTTTCTATCATCTTAATTTTGA 507884 30 100.0 38 TTAATTTTGA .............................. TTTTTATTTTAATAATGTTTCTATCATCTTAATTTTGA 507952 30 100.0 TTAATTTTGA .............................. AACTAAATCT ========== ====== ====== ====== ========== ============================== 11 30 38 GTTAAAATCAGACCGTTTCGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [486,418] Score: 0/0.18 # # Final direction: F [0.91,0 Confidence: HIGH] >NC_000913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2875723 29 100.0 32 NNNNNNNNNN ................AT.........A. CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC 2875784 29 100.0 32 NNNNNNNNNN ...........T................. TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG 2875845 29 100.0 32 NNNNNNNNNN ...............AA............ GTAGTCCATCATTCCACCTATGTCTGAACTCC 2875906 29 100.0 32 NNNNNNNNNN ............................. CCGGGGGATAATGTTTACGGTCATGCGCCCCC 2875967 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG 2876028 29 100.0 32 NNNNNNNNNN ............................. AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC 2876089 29 100.0 32 NNNNNNNNNN ............................. TAGTTTCCGTATCTCCGGATTTATAAAGCTGA 2876150 29 100.0 33 NNNNNNNNNN ............................. GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG 2876212 29 100.0 33 NNNNNNNNNN ............................. GCGACCGCTCAGAAATTCCAGACCCGATCCAAA 2876274 29 100.0 32 NNNNNNNNNN ............................. TCAACATTATCAATTACAACCGACAGGGAGCC 2876335 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG 2876396 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG 2876457 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,107] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_000913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2902036 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 2902097 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 2902158 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 2902219 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 2902280 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 2902341 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 2902402 28 100.0 GGTTTTTGCC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 7 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1034820 30 100.0 44 TGATTGCCCT .............................. TCCTTTATATTTCTCTTTCAAATAATCAACCCTTTTTAAACCTA 1034894 30 100.0 38 TTTAAACCTA .............................. TGAGCTTTTTATTATCAGATATAGTTAGAGAGTTATTT 1034962 30 100.0 37 AGAGTTATTT .............................. TAAAGAATAAAATCTCGTTTTTAGTGCTATTTATTGA 1035029 30 100.0 41 TATTTATTGA .............................. TACTGCTTGGGGAGATGCTGAGAGAAAAGCAATGAAAGATG 1035100 30 100.0 38 ATGAAAGATG .............................. TTCATATAAAAATTCATCACTATATTTTTCAATTAAAT 1035168 30 100.0 43 TCAATTAAAT .............................. TTTAACAGTATATTCAAACCGTGAATATTCCGTTTCATCAAAT 1035241 30 96.7 37 TTCATCAAAT ..................T........... TCTTTTTTACAGTTGTATATCGATAGATTTAAATTTA 1035308 30 100.0 36 TTTAAATTTA .............................. TTTGAATCCTGTTTTTTTAAGTTCTTCTATGAATAT 1035374 30 100.0 40 CTATGAATAT .............................. TGGGGGTCTTTGAAATTAAGAGGGTGGGGCGTGGAATTCA 1035444 30 100.0 47 GTGGAATTCA .............................. TTTTTTCTACAGTTGTAGGTAATGCAGATTTGTTTATTCCTTTATTT 1035521 30 100.0 39 TCCTTTATTT .............................. TATTCTGATTTTCAATTTATGTTCAGCTCTTAATTTCAT 1035590 30 100.0 TTAATTTCAT .............................. CTTTATTTTT ========== ====== ====== ====== ========== ============================== 12 30 40 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [467,230] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1219844 31 100.0 45 GTTCATAAAG ............................... CAGGAGATTAATTTATTCCCAATTATATTGATATTTTTAGCTATA 1219920 31 96.8 42 TTTAGCTATA A.............................. GAGGAGAACTAATATATTACAATAATAATAATAATTTATTAA 1219993 31 100.0 37 AATTTATTAA ............................... AATGGTGTCATTTATGAACTATCAGAATGCAATTAAC 1220061 31 100.0 43 TGCAATTAAC ............................... GGAGGATATAAAGGAAGGATTAGGGGAAGCAGTTAGACAATTG 1220135 31 100.0 TAGACAATTG ............................... AGGCGGTCAT ========== ====== ====== ====== ========== =============================== 5 31 41 GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [81,481] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_000868 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 482453 29 100.0 43 GAGAGGAGGT ............................. TCAGGGCCTACACGTTAGACAGGATTGACCCCAGGAAGAACCC 482525 29 100.0 41 GGAAGAACCC ............................. AGGAGTTTCTCCCCAACTCATAGCTAAAATCACAGGGCACA 482595 29 100.0 39 ACAGGGCACA ............................. AAACCACCCTGCTGCTCTTGTAATTCCGTTAGTATCTGT 482663 29 96.6 37 TAGTATCTGT ...............G............. GGCTAATCTGTTAAAGGGCAGGGCTAAGTTGGGCAAG 482729 29 100.0 44 GTTGGGCAAG ............................. CAGGAGAAAGTGCATGGGTTCATTGACGCAATCAGTTCAATCGA 482802 29 100.0 GTTCAATCGA ............................. CCTTGGGATT ========== ====== ====== ====== ========== ============================= 6 29 40 CTTTCCACACTACTAAGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [315,676] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1570374 30 100.0 45 TGATTGCCCT .............................. TGCTGTAAGCACATCTGGACTAGAAAAGTCAGAATTTTTAACCTA 1570449 30 100.0 39 TTTTAACCTA .............................. TGTTTTTATTATCTTAATTTTTTTTCTTAAAATCAGACC 1570518 30 100.0 36 AAATCAGACC .............................. CATAAGCACTTTTTTAGCTCTTTTACTTCATTTTCT 1570584 30 100.0 41 TTCATTTTCT .............................. TTTTTTGGTGGGGAATATGGAAATTGACAATAACACAATAA 1570655 30 100.0 39 AACACAATAA .............................. CGAAATAAACCAATGTTTAACTTGTGGCTGTTTTAAGAA 1570724 30 100.0 GTTTTAAGAA .............................. TGAAAATAAA ========== ====== ====== ====== ========== ============================== 6 30 40 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [486,265] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1267046 30 100.0 40 TGATTGCCCT .............................. CTTATATTCACTTGTATAATTGTTTTCTATTGCATTCAAA 1267116 30 100.0 36 TGCATTCAAA .............................. CCGCATTCTTTTTGTATTTTTAACTCTTCTAAAATA 1267182 30 100.0 49 TTCTAAAATA .............................. CAAAGCTGAAATTACTGAGGAAGATACTGAGAAAGTTATAATTAAAATA 1267261 30 100.0 37 AATTAAAATA .............................. CGAAAAAGAGGGTAAATTAACAATCTATAATATTGAG 1267328 30 100.0 47 TAATATTGAG .............................. CGCATTCCATTACCTATATATATACCGTTTATATAGCCGTTTCCATT 1267405 30 100.0 37 CGTTTCCATT .............................. CTTTAATTCTTCAATGCTATTAACAGTTTCATCCCTA 1267472 30 100.0 46 TTCATCCCTA .............................. CTGAGTATGGCCTATTGGGATGACAACATACTTAATTAGCCCATTT 1267548 30 100.0 37 TAGCCCATTT .............................. TTAAACTCTTTTTTCTTATCTTCTGACAATTGTAAAT 1267615 30 100.0 39 AATTGTAAAT .............................. TTATGTGGTTTTAGAGGATGGGAAGATTGTAGAAAAGGA 1267684 30 96.7 TAGAAAAGGA ..........................A... CTTTAGCATT ========== ====== ====== ====== ========== ============================== 10 30 40 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [614,82] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1456867 30 100.0 49 AGGAGATAAG .............................. TAAAGATGCACAAGGTTATCAATTAGTAATAGTAAATGAAGATACTTCG 1456946 30 100.0 41 AGATACTTCG .............................. AAATGAATTTAGTTATGATTATCATAGCAGATTGTTTAACG 1457017 30 100.0 42 TTGTTTAACG .............................. CGTTTAATGCTTATATTGCCGTGAAAGGTAAGAGCGGGCAGA 1457089 30 100.0 47 AGCGGGCAGA .............................. ATTATTCATAATAACACCAGATGAAGCTGAAAAATTGATAAAACAGA 1457166 30 100.0 41 ATAAAACAGA .............................. AAAAATTTATATACTACCAATACACTTATAATATACTTGTA 1457237 30 100.0 39 TATACTTGTA .............................. ACGAATTATTTAACAAAATATTTAGTAAAAGCATTTAAA 1457306 30 100.0 AGCATTTAAA .............................. AGGGCAATCAT ========== ====== ====== ====== ========== ============================== 7 30 43 TTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [222,386] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 351695 30 93.3 38 TCATCTGTTG -...........T................. GGAGTTGAAGCTCATAAAATTGTCCAAGATGTCGATTT 351763 30 100.0 39 ATGTCGATTT .............................. ATTCAATAAAAAAAAATAAGATAAAAAATCTTATTTAAG 351832 30 96.7 36 CTTATTTAAG ............T................. GTCATCTTCTATTTGTTGTATGTATTTTAATACGGT 351898 30 100.0 40 TTAATACGGT .............................. CATATTGCTCTTCCCCATCTGGTTCATCAGTGTAAGCATT 351968 30 100.0 36 TGTAAGCATT .............................. TATTTTTCCAATTGTTCAGGGGAAAGTCCTCCCTTC 352034 30 100.0 37 TCCTCCCTTC .............................. GTGGATTACCAGCTGATATGGGATTAGGTAGTGGATT 352101 30 100.0 39 GTAGTGGATT .............................. GATGAGAGAGTTATTTATGTAAGTGTTAAAGTTGTAGAA 352170 30 100.0 37 AGTTGTAGAA .............................. ATAATAATAGAGATAATACAGTTCCCAAAATGAATAA 352237 30 100.0 41 AAATGAATAA .............................. TTAACTCAACTTTTATTGAAGTTATTTTTATGTTGATTTGT 352308 30 100.0 36 GTTGATTTGT .............................. ACAATAGAGGTAAAAGAGGTTATAGGGTAATATTTG 352374 30 100.0 36 GTAATATTTG .............................. GATTTAATCTGAGTATTTTGTACATTTTGAGGAGCA 352440 30 100.0 TTGAGGAGCA .............................. AGGGGGACTT ========== ====== ====== ====== ========== ============================== 12 30 37 ATTTCCATTCCCCGAGGGATCTGATTTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [51,375] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 501630 33 100.0 33 TATGGACGGG ................................. AAAGGAGGTAATCTAACGATGAGGGAGGGCAGA 501696 33 97.0 26 GGAGGGCAGA ...............................G. GTGTGTGCGTGTGTTGGGGGAGGCAG 501755 33 100.0 34 GGGGAGGCAG ................................. ATTTCGATAGCTTCCTTGGCATCCTCTGCTTCAA 501822 33 93.9 TCTGCTTCAA ..............................AC. TGATGCC ========== ====== ====== ====== ========== ================================= 4 33 31 GTTAAAATCAGACCTCTTGGAGGATGGAAAGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.61%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [745,189] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 858179 29 96.6 38 AAGATAGTTA .....................T....... TAAAGAGTATCTTTCTCCTACACTGACTCCTAATATCG 858246 29 100.0 40 CCTAATATCG ............................. CTAAATTCTTTTTTTAACTTTTTAAGGTGAGAGGATGTTT 858315 29 100.0 GAGGATGTTT ............................. CAGGGCAATC ========== ====== ====== ====== ========== ============================= 3 29 39 TTTCCATCCTCCAAGAGGTCTGATTTTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [187,498] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_000916 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1472442 30 100.0 36 AATTGGCCAT .............................. GGTGAAAATACTAACACCCGTAGAAGCCCTTGAAGA 1472508 30 100.0 35 CCCTTGAAGA .............................. ATTACAATCGTAAGCATTATGGTGAATCGGCTTGT 1472573 30 100.0 36 ATCGGCTTGT .............................. TGAAAACTACGGAATGGTATAAGAATGGTGAGAGAG 1472639 30 100.0 36 GGTGAGAGAG .............................. GTAAATGCGAACTATTACTATAATAATAACCTTTAT 1472705 30 100.0 39 TAACCTTTAT .............................. ATATTTACAATTCTAATTTGATTTTTATTTCCCATGAAA 1472774 30 100.0 37 TCCCATGAAA .............................. ACTGGAGGAGATGGAAAAGTGCAGCACGAGTGACATC 1472841 30 100.0 37 GAGTGACATC .............................. ATGGAGGTGAAAGGAATGGTAGTGAATGAAAAAATGA 1472908 30 100.0 36 GAAAAAATGA .............................. GAAGCAATGAGCTACGCAGTAGGGTGAGAGAGCAGG 1472974 30 100.0 36 AGAGAGCAGG .............................. TTATCGTGAAATACTTATTCTTAATCGGTTTTAGGT 1473040 30 100.0 40 GGTTTTAGGT .............................. TTTATATATAATTTTAACATATCCACAAAATAGTACCTAT 1473110 30 100.0 36 TAGTACCTAT .............................. TTACAAACATCTCTATGGTTTCCAGTGCCATGACGA 1473176 30 100.0 36 GCCATGACGA .............................. TAAAGCTTCATTTGATTTACCGTCCATTACAAACAT 1473242 30 100.0 37 TTACAAACAT .............................. CCAGGAGAGCATCAATGACATGACCAACCGCCTCAAG 1473309 30 100.0 36 CCGCCTCAAG .............................. TTATGCTCTTAGGAGCATAGCGACGTAGTCATACAA 1473375 30 100.0 37 AGTCATACAA .............................. TTATAAAACCAAGAATGGAAGTAATGAATAGGCCATA 1473442 30 100.0 35 ATAGGCCATA .............................. TGGGATGTCCTCGATAGGCTGCGAGAGAGCGCAGC 1473507 30 100.0 39 AGAGCGCAGC .............................. AAAGGGTGGCGGAGAGTCGGTAGAAACGATGTGCAATGT 1473576 30 100.0 37 TGTGCAATGT .............................. ATCAAGCAAATGGTGATCATTATTTCCAGTACTCTTC 1473643 30 100.0 35 AGTACTCTTC .............................. TTTATTTGGACTGGTTTGCCGTCGAGGAAGAATTC 1473708 30 100.0 32 GGAAGAATTC .............................. TATTGGTCTCTGTCTCATCCACCGTAACGGTG 1473770 30 100.0 37 CGTAACGGTG .............................. TTTTTTATTACCCAATATTTTTCTTCAATTCTTTCCA 1473837 30 100.0 37 ATTCTTTCCA .............................. TGGACTGATTTAAGCCCAATGGGGGCTCTCAGGGCGG 1473904 30 100.0 38 CTCAGGGCGG .............................. ACTGGAAAAAAAGAGTACACCACAATCTACACGTAATA 1473972 30 100.0 32 ACACGTAATA .............................. GAATGCGAGGAGGCTTAAAGCCACATTCAAGG 1474034 30 100.0 32 ACATTCAAGG .............................. TATTGGTCTCTGTCTCATCCACCGTAACGGTG 1474096 30 100.0 37 CGTAACGGTG .............................. TTTTTTATTACCCAATATTTTTCTTCAATTCTTTCCA 1474163 30 100.0 36 ATTCTTTCCA .............................. GCTCAATAAGGGTCGACGTGGCCCCGGAGGCCACGT 1474229 30 100.0 35 GAGGCCACGT .............................. TACTGTGCGATCCACAGCTGACAGTGTAATTAAAA 1474294 30 100.0 37 GTAATTAAAA .............................. TGGACTGATTTAAGCCCAATGGGGGCTCTCAGGGCGG 1474361 30 100.0 38 CTCAGGGCGG .............................. ACTGGAAAAAAAGAGTACACCACAATCTACACGTAATA 1474429 30 100.0 32 ACACGTAATA .............................. GAATGCGAGGAGGCTTAAAGCCACATTCAAGG 1474491 30 100.0 37 ACATTCAAGG .............................. TGAAGCACTGTGTTGGCTCAATGCTGTCTAAGTGCTT 1474558 30 100.0 39 CTAAGTGCTT .............................. GGGAATACCTGAAGAAGATAAACGCATAGAGTTTGCCGA 1474627 30 100.0 36 AGTTTGCCGA .............................. GCTAGTTCATGGCAGATGAGTTCAGCGAGACCATAC 1474693 30 100.0 35 GAGACCATAC .............................. TAGATCACGCCCCCAAGCCACCTTAACCCGTCCGC 1474758 30 100.0 38 ACCCGTCCGC .............................. GTACATTTCGGTGGCGATTTTTTTCATTTCACCACCGA 1474826 30 100.0 37 TCACCACCGA .............................. ATCCGAAACATCTCAGTAGCGATTTTTTTCATTTCGC 1474893 30 100.0 38 TTCATTTCGC .............................. GAGTATGGAAATAGCTATGGATGGTGGTTTTCAATTGA 1474961 30 100.0 TTTCAATTGA .............................. TGGCGATCG ========== ====== ====== ====== ========== ============================== 39 30 36 GTTAAAATCAGACCAAAATGGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [713,525] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_000916 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1475089 30 100.0 34 TTCTTTCTCA .............................. TTCTATCACCTCTTATTTTTCTCTCTGGAGCCGT 1475153 30 100.0 37 CTGGAGCCGT .............................. CTATTTTTTCTTTGTCCTCTGTGGTTCTTTTGGATTT 1475220 30 100.0 38 TTTTGGATTT .............................. TTCTATTTTTCTTTTCTTTCTTTTGTCTTTCTTTCTAT 1475288 30 100.0 34 TTCTTTCTAT .............................. AAAATAACACTATCTAAATCATCAAAATCATTTA 1475352 30 100.0 37 AAATCATTTA .............................. TTGAGGATTTCATATGCTTCAAAGGGGCTTTTTCCTT 1475419 30 100.0 35 CTTTTTCCTT .............................. GGACACGCGTATAGCCTGAAGACGACCCTCAGCAG 1475484 30 100.0 CCCTCAGCAG .............................. TCATTCTTGG ========== ====== ====== ====== ========== ============================== 7 30 35 GTTAAAATCAGACCAAAATGGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3360,2] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_000917 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 148 30 100.0 38 ATTACTGATG .............................. AGCCTTTCAGCCCTAGTGTGAGTGTCAGGTTTACTCTT 216 30 100.0 38 GTTTACTCTT .............................. GTTTGTTAAGGGCTTTGATTTGCTCCTCGGTGGCTCTG 284 30 100.0 37 GGTGGCTCTG .............................. TAAAGCAGTTCACCCCTGTTACTGGTTTAACTGCCTT 351 30 100.0 35 TAACTGCCTT .............................. GTATTTGAATCAATGAAAAGAAATCTTACCTCGTC 416 30 100.0 36 TTACCTCGTC .............................. AGTCTTCTGGATGGGTCACAAGGGAGACATCGAGGC 482 30 100.0 39 ACATCGAGGC .............................. TCAGCAAGGTTACGTCGGAGATCCTCGAAGAGGGTATCA 551 30 100.0 36 GAGGGTATCA .............................. CGAGGATTGCTGCCAAAGAGAGCGCCTCGTTCTTCG 617 30 100.0 38 TCGTTCTTCG .............................. AAAGTGAACATGCTTAAAGAAATGCTGACAGAAATTGA 685 30 100.0 36 CAGAAATTGA .............................. AGCGAGGAAGAGCTTGACGAATTCTTCAAAAGCGGA 751 30 100.0 40 CAAAAGCGGA .............................. TTGCATTTACATCGGCAGAATTGGTCTCGTCGGAAGGCAT 821 30 100.0 42 CGGAAGGCAT .............................. CGGTTCTCTTACGTACTCATGCGAGAAGTGAGACTCGCGTTG 893 30 100.0 38 ACTCGCGTTG .............................. AGCAAGTCGTGAAACTGAGCAGTCAAAACAGATCGTTA 961 30 100.0 35 CAGATCGTTA .............................. TTTTCCCATACAATTACGACTTCGCCGGAAAAAAA 1026 30 100.0 37 CGGAAAAAAA .............................. AGCGAGTTCGACCACGTCGTAGGTCTGCTGTCGGCAA 1093 30 100.0 38 CTGTCGGCAA .............................. TGTTTGAAGTAGTTGAATACACCGTTGTGCTGTTTGTT 1161 30 100.0 39 GCTGTTTGTT .............................. AGAGGGAGTATTAGGGCCATACTGGCCGGAGTTGTGGTT 1230 30 100.0 41 AGTTGTGGTT .............................. ATTCCAAATTGCGGAAAAAGATTCGAGGGCAGTTACTTCCC 1301 30 100.0 39 GTTACTTCCC .............................. ACGTCGTTTATTGCCGTAACGCTAACACCATACTCAAGA 1370 30 100.0 40 ATACTCAAGA .............................. AAAGCCGTCCAGCGATTGTTTTCATCCGCACCGATAATAG 1440 30 100.0 36 CCGATAATAG .............................. GGTTTAGACTTCCAGCAGGTAAGACATTCAAGGTTC 1506 30 100.0 38 TTCAAGGTTC .............................. GAGGTAATAGCTGCGAGGGTCAAGCAGGTTTACGAGAA 1574 30 100.0 39 TTTACGAGAA .............................. GAGCAATATTAGAAGAACTCATGGCCACTGGCGACTTCA 1643 30 100.0 40 GGCGACTTCA .............................. TTACATATCCATTCACAGCACCTATGGCTGCCATCAAAAT 1713 30 100.0 41 CCATCAAAAT .............................. CTTCACAACCAGCCTGACCTCAATCTCTCCTCTCTCTTCGA 1784 30 100.0 37 CTCTCTTCGA .............................. CATGGACATTCAGGCACAGCCAGAGCAAAAGACCTTC 1851 30 100.0 40 AAAGACCTTC .............................. TTCGTTAAGCTTTTCTCTAATTAGATTAACCGTTTTCGTA 1921 30 100.0 36 CGTTTTCGTA .............................. TTTGATGTGAAAACCGCCCCTAAGCTTCCCGTTCGT 1987 30 100.0 39 TCCCGTTCGT .............................. ATCCTCACCGTCGGCGTGTCTTTCCCATTCAATTTCGGC 2056 30 100.0 42 CAATTTCGGC .............................. CATCAGCTTATGCATGTAATAAGCGAAGCTACATAACTGCAC 2128 30 100.0 39 ATAACTGCAC .............................. ATCTATGTAGAGAAGGTATCCGATTTCATAGACTGGAGA 2197 30 100.0 38 AGACTGGAGA .............................. TATTTTTTTAAAAAAATATATAAAAAAGGAGGTGATGC 2265 30 100.0 40 GAGGTGATGC .............................. CTGTTCATCCTGTTCGGAGTGTTGATTTACGCAATTCTCA 2335 30 100.0 38 GCAATTCTCA .............................. TCGCTCTCTTGGTAGGTTACTTTGTCTTTACGGAGGTT 2403 30 100.0 36 TACGGAGGTT .............................. CGGTTTCCTCGCTGATCCGACTCTTCAGCCATCGCT 2469 30 100.0 39 AGCCATCGCT .............................. TAAGCGTCGCTGGGCGTCGCTCGGTGGTGGAACGGGTTA 2538 30 100.0 38 GAACGGGTTA .............................. GCCAGGATAATTGAGCGTGTTGTAGAGTCTGCCGCTGT 2606 30 100.0 38 CTGCCGCTGT .............................. ATTTCTGGTCGTGTTTACAAACTTAACGAACGCTACGA 2674 30 100.0 36 AACGCTACGA .............................. CCAGCATTGTTCCAGCCGCAGCCAAACCGAGAAGGG 2740 30 100.0 36 CCGAGAAGGG .............................. GCCGTTTTTCAGCCTCTTTGCCTTCATCCAGCATTT 2806 30 100.0 38 TCCAGCATTT .............................. CCTCCTTTGGGTGGAGTTCCAATCAGGAACGTGATTGG 2874 30 100.0 39 ACGTGATTGG .............................. AAAGAATGACCGAACACCTTAACCTCTCTATAACCCCAC 2943 30 100.0 39 ATAACCCCAC .............................. CTCTTCCCAACGTCACCCACAGATAACTATCTGGAGATG 3012 30 100.0 35 TCTGGAGATG .............................. GTAACCATAACCTACAAGTGCGGAGTGCCCTTGCA 3077 30 100.0 41 TGCCCTTGCA .............................. TACTGCTCCCAGCACAAGGCAGCGCAGGCGTCGTGGTCTTC 3148 30 100.0 37 CGTGGTCTTC .............................. CCTACGGCCGCAAATCGGACAGAGCTTATCCATCCTG 3215 30 100.0 38 ATCCATCCTG .............................. TTTGCATCTTCACCGGCATTGTCAGCTGCGAACTCTGA 3283 30 100.0 42 CGAACTCTGA .............................. ATAGCTCTCTGTAACTCACTTCTTCCCCATACCATGTTTCTA 3355 30 100.0 38 CATGTTTCTA .............................. AGCATCTTCGTCTTCTTTATCCTCTTCAGGAGCTCTAA 3423 30 100.0 37 GGAGCTCTAA .............................. GAAGTTTGCGTTTGTTCCAGAAGTTTGTAGAGTGCCA 3490 30 100.0 38 TAGAGTGCCA .............................. AATGCTAATCGGATTCTCTGGTCCATCTGCAAGTGGCA 3558 30 100.0 37 GCAAGTGGCA .............................. TGCTTCATCTTTCTCCAACACTTCTACAATCTTGACT 3625 30 100.0 39 AATCTTGACT .............................. AAGACTACGACTCTTGGTAATCCATCGTTGCCTCTAATC 3694 30 100.0 44 GCCTCTAATC .............................. GGAACCCCGTAACTGGCTGCCTTCACGGCTGCGATTACTGCTAC 3768 30 100.0 38 TTACTGCTAC .............................. ATCAAGAGCCCATGCCGTCAGAGAATGCGTTGAGGAGT 3836 30 100.0 40 GTTGAGGAGT .............................. TCTGATTTTTCGGCAACAACAAACCTGAACTCAGAATTGC 3906 30 100.0 39 TCAGAATTGC .............................. CCTTATCTCATCCTCAGCACCATAAGGCATTTGACCCTT 3975 30 100.0 38 TTTGACCCTT .............................. CGAGACATTAACACAATTTATTGGGCATGTCCTGACGG 4043 30 100.0 38 GTCCTGACGG .............................. GCAGACGACGTACACTACTGGGGCGTTGTCAAGGAACA 4111 30 100.0 43 TCAAGGAACA .............................. TAAGAACATCTCATAAACTTGTGTTGGACTCGGTAGCTCCCAA 4184 30 100.0 TAGCTCCCAA .............................. GCAATGGCGA ========== ====== ====== ====== ========== ============================== 60 30 38 GTTGAAATCAGACCAAAATGGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [149,78] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_000916 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 983373 30 100.0 35 ACGCATTCAA .............................. TATCTTATGTCCGTTATTTTTTACCTACGTTGCAG 983438 30 100.0 36 TACGTTGCAG .............................. CAACAATAAAATTCAGGGGGACTGAGTACATAAAAG 983504 30 100.0 37 TACATAAAAG .............................. GATTGAAATTACTGAGGATGGTCTCTACTTCCACCTT 983571 30 100.0 37 CTTCCACCTT .............................. ACGGCGTCTGTGACGTCGTTAGAGAGGATGGAGTCGT 983638 30 100.0 37 ATGGAGTCGT .............................. GGTTTTGTGTGGGTGTGCATTCTGGTTGTGGTTGGTC 983705 30 100.0 38 GTGGTTGGTC .............................. AAGCGCCGGGCAGACAGCACACATACAAGACTTCACAA 983773 30 100.0 38 GACTTCACAA .............................. TTTCACGATGACTCTGTTGAGTTCATCGTATTCTTTCC 983841 30 100.0 36 TATTCTTTCC .............................. TGATGTTGGGAAGGTTTGGCCATCTGAATGATTTGA 983907 30 100.0 35 AATGATTTGA .............................. TCAACATGGGGACATACGTCCAGGGGGACAGACGC 983972 30 100.0 37 GGACAGACGC .............................. TCACCCTCCAGACTAGCTCATCAATGTACCCATTACC 984039 30 100.0 35 ACCCATTACC .............................. GAAATACAACCCCACACGCCAGTCCATCCTCTTTC 984104 30 100.0 37 ATCCTCTTTC .............................. CTGTCTGCCCCTATTGTTTTGATCATGTTTGTGCATG 984171 30 100.0 37 TTTGTGCATG .............................. CCTTTAGAACTAAAAAAATAACAAAATAAAAAAAGAC 984238 30 100.0 36 AAAAAAAGAC .............................. GGGTTCTCATAGATGGGCGACAGAAAGACATGAAAA 984304 30 100.0 37 GACATGAAAA .............................. CCGTTACTCATGCATTATTAGTGAGAAACAACTCTTT 984371 30 100.0 37 ACAACTCTTT .............................. GATTGAAATTACTGAGGATGGTCTCTACTTCCACCTT 984438 30 100.0 37 CTTCCACCTT .............................. GGTCGGTGCCCGGGTCGGGTCGGTGCCCGGGTCGGGT 984505 30 100.0 38 CGGGTCGGGT .............................. TATCATCACGCTTGAAGAGTATAATAAAGTTGTTAAGA 984573 30 100.0 36 GTTGTTAAGA .............................. TGTTCACTATTTGGGTCATTTATGGGTACTATTTTG 984639 30 100.0 38 TACTATTTTG .............................. TATGAGGGCTGTGCATGCACGGATCAGCAAGGAAACAA 984707 30 100.0 37 AAGGAAACAA .............................. TCAGATTCTTTCTGACAATAATATGAGGTGATATAAA 984774 30 100.0 36 GTGATATAAA .............................. AGTATGTGCAGTATCCTCTCTATGTCCCCTTCATTC 984840 30 100.0 37 CCCTTCATTC .............................. CCTATATTATGTCCATTATTTTTCATTTACGCTGCAG 984907 30 100.0 37 TACGCTGCAG .............................. AATATTGAAACGTTCAAGGACATGTTGAAGAGGTATG 984974 30 100.0 38 AAGAGGTATG .............................. GAGGAAACGTTTACCCTTGAAGGGCGTAAGGCCTGATA 985042 30 100.0 37 AGGCCTGATA .............................. TTTCGGTGGGGGGTAGGTGGGGGGTGTGAAGGTAGAT 985109 30 100.0 38 GAAGGTAGAT .............................. GTATCCATGACTCCTGATGCCCTGGCACGTCGAAGTCA 985177 30 100.0 36 GTCGAAGTCA .............................. AGTATGTGCAGTATCCTCTCTATGTCCCCTTCATTC 985243 30 100.0 37 CCCTTCATTC .............................. GGTTTAGGGACTGTGAGATCGTTGTTGAACATAATAA 985310 30 100.0 36 AACATAATAA .............................. TCGGTGGGGGTAGGTGGGGGTATAATCAGAACAAAT 985376 30 100.0 37 CAGAACAAAT .............................. GGTTTAGGGACTGTGAGATCGTTGTTGAACATAATAA 985443 30 100.0 36 AACATAATAA .............................. TCGGTGGGGGTAGGTGGGGGTATAATCAGAACAAAT 985509 30 100.0 36 CAGAACAAAT .............................. AATATAGTGCAAATGATTCTAGAAAATAGTAAAATA 985575 30 100.0 36 TAGTAAAATA .............................. TAAAATGAAAAAAAGATTCAAAAAAACATGCAAATG 985641 30 100.0 36 CATGCAAATG .............................. ACAAAGTGCCCCGCATGTCGTGAAAAGATGAAGAAA 985707 30 100.0 36 GATGAAGAAA .............................. CGTGGAGGGCCTCGACTACTACAAGGCTATCAGGTT 985773 30 100.0 37 CTATCAGGTT .............................. TGAATCTGACATGAACTGCTATTGCTGTAACCGATAT 985840 30 100.0 35 TAACCGATAT .............................. GCTAAAAAGGAGTACCTGCAACGGAAAGTACCGGT 985905 30 100.0 37 AAGTACCGGT .............................. CTTTTAAATCCTCTAAAAACTGTTCTAAACACCAATC 985972 30 100.0 36 AACACCAATC .............................. AACTTCACAGAAAAGCCTCCATGGAGCAAGTGCTCT 986038 30 100.0 37 CAAGTGCTCT .............................. AAGAGGTGAAAGATATGAAAATAAAAGTAAAAATAGA 986105 30 100.0 37 TAAAAATAGA .............................. CTCCTCACTACCACTAAGATCATATGCTGCCGCATAA 986172 30 100.0 36 TGCCGCATAA .............................. AGGAGAAACTGGATAGGAGGTGAATGAGATGATTGA 986238 30 100.0 36 AGATGATTGA .............................. ATGTTTTTGAGGTCGTATAGCACTATGATCGCACAA 986304 30 100.0 38 GATCGCACAA .............................. GATTTTGACGGTGAGTACAATCTCTGCTGTCAGAACTG 986372 30 100.0 36 GTCAGAACTG .............................. AGGTTTATGGGTTCTAAACAATAGAACCCCTGATTA 986438 30 100.0 37 CCCCTGATTA .............................. ATAGAATGAAGAGGAAATACAAGAAAACATGCAAATG 986505 30 100.0 39 CATGCAAATG .............................. GGGTTAATAAAATCGTCGATGATGTTGTAGACAAAATCA 986574 30 100.0 37 GACAAAATCA .............................. ATGGATGAGGAAGGTGACGGCCCTGGGAAGTACAGGG 986641 30 100.0 38 AAGTACAGGG .............................. ACATACCCTTCTTCATATAAGAACTGCACATAGTCAAT 986709 30 100.0 42 CATAGTCAAT .............................. CGAGAAGGGTGAGGACGTCCTTGAGGGCGCATACGATGTCCT 986781 30 100.0 37 ACGATGTCCT .............................. GCTTAGTCGTTATAATCGAGTCGATAAGATTCTTTGA 986848 30 100.0 36 GATTCTTTGA .............................. CCGTGCTGAGGATGTCTTCGTGTACCCGGTCCTTCT 986914 30 100.0 38 CGGTCCTTCT .............................. CTGTAGCGAATTACTCCGCTGAGTTCTCATCCTTTGAT 986982 30 100.0 37 ATCCTTTGAT .............................. CCATTTTGTTGCCTCATTTAAACTCATCTTTAAAATT 987049 30 100.0 37 CTTTAAAATT .............................. GCAGAGGAAAACGAAGAAAAGGAGAAAATAGAAGCCA 987116 30 100.0 37 ATAGAAGCCA .............................. CTATCTAAGTAGTATGAGTCTTCAAAGAGGATATTGA 987183 30 100.0 36 AGGATATTGA .............................. CAGGCTTAGTGTGGGTTTTATTGAATCTGTACTTAT 987249 30 100.0 36 CTGTACTTAT .............................. CCGTGCTGAGGATGTCTTCGTGTACCCGGTCCTTCT 987315 30 100.0 38 CGGTCCTTCT .............................. CTGTAGCGAATTACTCCGCTGAGTTCTCATCCTTTGAT 987383 30 100.0 37 ATCCTTTGAT .............................. CCATTTTGTTGCCTCATTTAAACTCATCTTTAAAATT 987450 30 100.0 37 CTTTAAAATT .............................. GCAGAGGAAAACGAAGAAAAGGAGAAAATAGAAGCCA 987517 30 100.0 37 ATAGAAGCCA .............................. CTATCTAAGTAGTATGAGTCTTCAAAGAGGATATTGA 987584 30 100.0 36 AGGATATTGA .............................. CAGGCTTAGTGTGGGTTTTATTGAATCTGTACTTAT 987650 30 100.0 36 CTGTACTTAT .............................. AGGTGAGAAAAAATGAAAGGAAAAGAAGTTGAGAAA 987716 30 100.0 38 AGTTGAGAAA .............................. TGGCTTGGCCAGGCTGGGGTCCAGGCCACCCTCATCGC 987784 30 100.0 37 CCCTCATCGC .............................. ACTTATTTATCGATAAAGTTCTACTCACATGTTTAGT 987851 30 100.0 36 CATGTTTAGT .............................. GGGGAGGACCTCATAAAATTTTTGGATTAAAATGTG 987917 30 100.0 32 TTAAAATGTG .............................. TTTCCCTGAGATGATGTCCTTGATTGTGCTGC 987979 30 100.0 38 ATTGTGCTGC .............................. ATATACATCATATATTAATAAAATAAAAAAAATCAATA 988047 30 100.0 36 AAAATCAATA .............................. GAGTTCATTGTACTCATTGATCGTCTCTTCATCCCC 988113 30 100.0 36 CTTCATCCCC .............................. TGGATTATTGGGACTTACATGCGACAGATTTTTATA 988179 30 100.0 37 GATTTTTATA .............................. GGATCTGAAAATAAAGAAAGCTTCAAATCAAAAAATA 988246 30 100.0 36 TCAAAAAATA .............................. CTTCTAGCAAGAGACATTGACGATATACACAAGTAC 988312 30 100.0 37 ACACAAGTAC .............................. CGGGGAGAGTCTGACATTCTTGAAGTAGAACCTCCCC 988379 30 100.0 36 GAACCTCCCC .............................. TCACACTGTACCCGAACTTCTCCGCGACTTTCTTTA 988445 30 100.0 37 ACTTTCTTTA .............................. AGAGGTTATGAAATCAGTAATAGCCTCAAGGAGTAAG 988512 30 100.0 36 AAGGAGTAAG .............................. TAAAAGTAACCTATAACAATTACCTATGGCTCATAA 988578 30 100.0 38 TGGCTCATAA .............................. CCTCAGTAATGTAATAATCGATATAGCAAGTTGCGATG 988646 30 100.0 37 AGTTGCGATG .............................. ACGTAACAGTATATACTGTCCAAAATGTGCCGCAGAA 988713 30 100.0 34 TGCCGCAGAA .............................. CTATAGGGTCATCCTCGAGGACAGCGCCCGCTTG 988777 30 100.0 36 CGCCCGCTTG .............................. GGCTCGGCCAGGCAGGGGTGGAAATGGAACTCGTCG 988843 30 100.0 37 GAACTCGTCG .............................. TATGACGCCCTCAAAGTCTTTTTCCCGTGCGGCCTCG 988910 30 100.0 36 TGCGGCCTCG .............................. CATGTCATGACCCGTGCCATGATCCGCCGATCAAAA 988976 30 100.0 37 CCGATCAAAA .............................. TCGAATGCCTATTAAGCCTGTATTCAGCATTAGAAGA 989043 30 100.0 35 CATTAGAAGA .............................. AGGCCTGGTTCATGGTCGAGGGTCTCCTTGCTTAT 989108 30 100.0 36 CCTTGCTTAT .............................. TGTTCACTATTTGGGTCATTTATGGGTACTATTTTG 989174 30 100.0 38 TACTATTTTG .............................. TATGAGGGCTGTGCATGCACGGATCAGCAAGGAAACAA 989242 30 100.0 37 AAGGAAACAA .............................. TCAGATTCTTTCTGACAATAATATGAGGTGATATAAA 989309 30 100.0 36 GTGATATAAA .............................. CATATAACGAAATTAAGTCAAATTCGTTTCATTAGT 989375 30 100.0 34 TTTCATTAGT .............................. TCAGGTTGAGGTTTCAGGTTGAGGTTTCAGGTTG 989439 30 100.0 36 TTTCAGGTTG .............................. GGATGATCGGGGTGGGTATGTTCATGCATGGAAATC 989505 30 100.0 36 CATGGAAATC .............................. TGAATACCTGTTCCTCTTCGTATTCCTCATCGCAAC 989571 30 100.0 36 TCATCGCAAC .............................. CCTTTTTACTCTGTTTAGCCCTTTTTACTGCACAAT 989637 30 100.0 36 ACTGCACAAT .............................. TTACTTTTATAAATAATATCTGAACTTTTTCACCTT 989703 30 100.0 37 TTTTCACCTT .............................. AAGGCGGTTAAGCACACTCAACGCTCTGATTGAGTGT 989770 30 100.0 37 GATTGAGTGT .............................. TCACAGTCAGCTCCACTGAGTCCATGCTTAGAGCCTC 989837 30 100.0 35 TTAGAGCCTC .............................. TTAATTCCAATATGGGCCGATATCTGCCCTCTTTT 989902 30 100.0 37 GCCCTCTTTT .............................. CCGGAACACCAGGTCCTGGGCTTGTGGGTTCTGCTCG 989969 30 100.0 32 GTTCTGCTCG .............................. CATCTGTTTCACCTCTTCTTTTTTTCTTTGTG 990031 30 100.0 34 TTTCTTTGTG .............................. TTTATTAATTTAGTATTGGTTGTTTGGTTAATTC 990095 30 100.0 36 TGGTTAATTC .............................. ATATATACCATATTGAACATTGATTTTAGCGTTTTT 990161 30 100.0 37 TAGCGTTTTT .............................. CCAGCAGAAACAGTAATAGTCAAATATTATAAGCACA 990228 30 100.0 37 TATAAGCACA .............................. CTTGATAAGGGTAGTAAACGAACCCGATAGTGAATAT 990295 30 100.0 35 TAGTGAATAT .............................. CCAAATAAAACGTTAATATCGATTTAATTCCAATA 990360 30 100.0 37 AATTCCAATA .............................. CGTTTCAACTAATGAAACTGTCTTAAATTGCTTATTT 990427 30 100.0 37 TTGCTTATTT .............................. TCGCAGAACATCATACACATCAGGTAGTCTATACAGT 990494 30 100.0 34 TCTATACAGT .............................. TGATGGTTTTGATGTTTTGTGTAAAATTCGTGAG 990558 30 100.0 37 AATTCGTGAG .............................. GAAGTCACACTGAATACGAAGAAATACAAGACACAGT 990625 30 100.0 37 AAGACACAGT .............................. CCGGTCCTTGACGGGAAAATCTACAGGGCCACAATAG 990692 30 100.0 37 GCCACAATAG .............................. ACACAGTACAATTATTCGGAATAATACACGCACAATG 990759 30 100.0 37 ACGCACAATG .............................. ATGAACATGCAGATAAAAGATGATATAATAGAAAAAT 990826 30 100.0 32 ATAGAAAAAT .............................. AAGTATTTTTCTGAATTCACGGATTGCTTCGC 990888 30 100.0 37 ATTGCTTCGC .............................. TATAATCGAATATTGTTGCGTATTGTGTTGTGTTTTT 990955 30 100.0 40 TTGTGTTTTT .............................. AGGTTCTTGTGGGTTATTGTTGTCCTAGTCCAGTTTACAC 991025 30 100.0 36 CAGTTTACAC .............................. CTAAAGTTTCTCTGTAGTCCACATCCCCTTTTTTCA 991091 30 100.0 37 CCTTTTTTCA .............................. TGAGGTGACAAGTATCAGGTTCTCACAGTGTTTCATG 991158 30 100.0 38 GTGTTTCATG .............................. ACCGATGGTACCTCAGGATACTATTCCCACCACTCACC 991226 30 100.0 36 ACCACTCACC .............................. TTGAAGACTCATACTACTTAGACAGTTTTGAATTCG 991292 30 100.0 37 TTTGAATTCG .............................. ATCGAGGAATTCTATTTTATCCTCACCAGGATAGCGG 991359 30 100.0 36 AGGATAGCGG .............................. ATGTTTTCCGTTATACTATAGTGCGTTTTGGTATTG 991425 30 100.0 37 TTTGGTATTG .............................. CCATACCACACATTTGGATTGTAGGTGGTTGATGTTA 991492 30 100.0 33 GTTGATGTTA .............................. TAGCGGTTAATGTCGTCGATGTCCCTTGTTATT 991555 30 100.0 CCTTGTTATT .............................. AGGGCGGATT ========== ====== ====== ====== ========== ============================== 124 30 36 ATTTCAATCCCATTTTGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [68,887] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_000917 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 398369 30 100.0 38 TACACGTCCA .............................. TTACTGTGTTCCGAGCTTTCAGAGGCAGGCCAAGAGCT 398437 30 96.7 39 GCCAAGAGCT ....T......................... CTTCATGTGCTCTCAACCAGTAGTATATTGTCCTAACTG 398506 30 100.0 37 GTCCTAACTG .............................. AGGCCCGGAATCAACAGGAACACCTGATACACGAATA 398573 30 100.0 38 TACACGAATA .............................. ATGCGGAATTAACAGCATTATCAGGAAAGCGATTATGA 398641 30 100.0 37 GCGATTATGA .............................. GGGGGGAGGATGAGAGCTCTGTTTGCCGTTCTGGTGT 398708 30 100.0 38 GTTCTGGTGT .............................. TTTCTGGCATGGGGAGTTAGCAGGAACGTGGCAGGCTA 398776 30 100.0 37 TGGCAGGCTA .............................. GTTAAGCTCTCGGTCGGGCTCTTTGCTCGGTAGAACC 398843 30 100.0 38 CGGTAGAACC .............................. GACTGTAATCTCAACTCCTCCGCCATCTTCTGAAACTC 398911 30 100.0 41 TCTGAAACTC .............................. CACATTGACGTGGCGGATTAAGCGCTTGTGGAAAGTGTTTT 398982 30 100.0 36 AAAGTGTTTT .............................. GATGAAGCCATATTTGTCGCATTATTCCACGACGTC 399048 30 100.0 38 CCACGACGTC .............................. CTTCTCAACTATCGGTTGTTTGACATTTGTATCCTTTC 399116 30 100.0 37 GTATCCTTTC .............................. GAAGTTCCACATTCCCGTGACTTTCAAGAAGATTATG 399183 30 100.0 38 GAAGATTATG .............................. ACAATCTGATCGAACAGATTACCAGTCAAAGCAACTCC 399251 30 100.0 42 AAGCAACTCC .............................. TTGCTGAGCTCAGAGGCTTTACCGCTAACACTCGCCTTAACG 399323 30 100.0 42 CGCCTTAACG .............................. TTGTCAGTTCTCTTCTGATCGATTCGGCCAGAGTGGTATATT 399395 30 100.0 40 GTGGTATATT .............................. CTGAGTCTGCTTACTCCAAGATTTATGTCTCTGTATGTCT 399465 30 100.0 37 CTGTATGTCT .............................. CCGGCAAAACAAGATACCACGATTTCTTCCCATGCCA 399532 30 100.0 37 TCCCATGCCA .............................. CTCCGACTATCACCCAGTCAAACCCCTCGAAGTCCGA 399599 30 100.0 36 CGAAGTCCGA .............................. AGGTGCCTTGTAACCTTTCTATTTTTTGATTGCTCT 399665 30 100.0 37 TGATTGCTCT .............................. TACCGAGCTGCTCAGCGTTGGGATGGAGTATTTCACG 399732 30 100.0 35 GTATTTCACG .............................. CTGCGGGGGAGCAGCCCATCGCCGAATACGACAAC 399797 30 100.0 36 ATACGACAAC .............................. TACTCCCCTGAAACCTCCTCAGAGCCTTCGTGTCCT 399863 30 100.0 38 TTCGTGTCCT .............................. CGTTCGGCGTCGTAGAGGAAGAGAAGAGGGAGTCCAGA 399931 30 100.0 41 GGAGTCCAGA .............................. GAGGCGTTCATCAAGGAGGCTTACCGAGTTCTAAAAAAAGA 400002 30 100.0 41 TAAAAAAAGA .............................. AGTCGTTTTGAAAACCACCGAGCCGTCAGCGGTTGCGACCC 400073 30 100.0 37 GTTGCGACCC .............................. TAAGATCCTGAAGCCAGATCCAGACCTCAAAGAAGGC 400140 30 100.0 40 CAAAGAAGGC .............................. CAATCTCGTCGTCAGCAATCGAGATATTAGCAGTTCCCGA 400210 30 100.0 38 CAGTTCCCGA .............................. TATTTAGCCCTCTTAACGACCCGTTCTTCGCTGTTTAT 400278 30 100.0 41 CGCTGTTTAT .............................. TTTAAGAACCTTGAATGTCTTACCTGCTGGAAGTCTAAACC 400349 30 100.0 44 AGTCTAAACC .............................. TCAGCCACGTCGTTGAACCGATGCTCGCAGACTTCAACGGCTCC 400423 30 100.0 37 CAACGGCTCC .............................. TCCGTAACTATGCTATTGTTCTCAAGCAAATTATACT 400490 30 100.0 36 AAATTATACT .............................. CAGGAGGAATGATATGTTTATTGGACAAAGACAGGT 400556 30 100.0 42 AAAGACAGGT .............................. ATCGCCAATTGCCTCAACACTCACTTTGCCATAGCAATACAA 400628 30 100.0 38 AGCAATACAA .............................. TTCGGGGGATTTGATGAGTTGCTTCTCCTCTTGCCCTT 400696 30 100.0 35 TCTTGCCCTT .............................. TCCCCTCTGGAGTTCGTGAGGTATGCCTCCTTTAT 400761 30 100.0 36 CCTCCTTTAT .............................. GGCCGAGCTGAAGCTGCTCTATGTCGGAGAGTTCCA 400827 30 100.0 36 GAGAGTTCCA .............................. TAACGAATCTCAAAGCCCTCGCATTGGAAAGGGTCG 400893 30 100.0 36 GAAAGGGTCG .............................. CAAGTACAGACTCTCGAAGCCGCCCGTAAAATCGCT 400959 30 100.0 37 TAAAATCGCT .............................. AAACCCCCCTCTTGGTGGAGTTGGCAAAGATTATGTC 401026 30 100.0 37 AGATTATGTC .............................. TCACGACGCTCCCTAACGGTAAGGCAATAGTTAAAAG 401093 30 100.0 36 TAGTTAAAAG .............................. TAGGGCAACAGTTGTTCGATCTCCTCTCTCGTTAAG 401159 30 100.0 36 TCTCGTTAAG .............................. TGTTCAATCAAGTCAAAACGTATTACTCTCAAAGCG 401225 30 100.0 37 TCTCAAAGCG .............................. CATTAACAGCTCTCAGAACGATTTGGGACAGAACAAT 401292 30 100.0 38 ACAGAACAAT .............................. TTGAACTCCACCTCTGGCAACAGCGGCTGCTATTACTG 401360 30 100.0 38 GCTATTACTG .............................. CCTTGATCGAGGGAGAGAAGAACCCTCGAGTCGTCGTC 401428 30 100.0 37 AGTCGTCGTC .............................. TCAAAAACGTTTTGGAGAGTAGTTCTCGCACTTGCTG 401495 30 100.0 36 GCACTTGCTG .............................. CGCCTTGCTGAAAGCTCTAAGCACCACTTCGGCAAT 401561 30 100.0 CTTCGGCAAT .............................. CATCAGTAAT ========== ====== ====== ====== ========== ============================== 48 30 37 CTTTCAATCCCATTTTGGTCTGATTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [259,427] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_000917 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1690930 37 100.0 38 TTTAGGGAGG ..................................... CTATTCTCCAAATAAAATTATATAACGCATTAACATCA 1691005 37 97.3 37 ATTAACATCA A.................................... CAGGAGGGACCGGAAACACACGGTTGAAGGGGAACGC 1691079 37 100.0 38 AGGGGAACGC ..................................... TCTATAACTCCTATACGGTCAACATTGTAACCTGGGTT 1691154 37 100.0 39 AACCTGGGTT ..................................... TCTCGCTTGCCCTGATGAAATCGGATGGCTTTGCGTCCA 1691230 37 100.0 36 TTTGCGTCCA ..................................... ATCTTTTGCACTTCCTCCTTAACCTTCTTAATCTCC 1691303 37 100.0 39 CTTAATCTCC ..................................... GCTCTGCAGGGCCAGGGTAAGACAATTGCTGACATAATT 1691379 37 100.0 53 TGACATAATT ..................................... CTTCAGGTAACCCCTGAACTAAGACCTACTCGGACAGGATTAAGCTGCCGTAT 1691469 37 59.5 36 GCTGCCGTAT ---------------...................... CTTCAGGTAACCCCTGCACAATTTCGGCCTTTTTCT 1691542 37 100.0 38 GCCTTTTTCT ..................................... GTCTAACAGGCACAGGAGAACACATTGCACCCTTGCAA 1691617 37 100.0 39 ACCCTTGCAA ..................................... CCTTCAATATCACTGTCCAGTTTCTTGAAGCACACTGGG 1691693 37 100.0 39 GCACACTGGG ..................................... ATGTCAACATGTTCATGCCTGCTTCAAAGCCGGATTTGG 1691769 37 100.0 37 CCGGATTTGG ..................................... TTTGGACTATTTCGCCGCAATCTGCACAGACTACTTC 1691843 37 100.0 35 AGACTACTTC ..................................... GTCTCGCTCAGGTCGGTTAAGGCATCGTTCATCTC 1691915 37 97.3 41 CGTTCATCTC C.................................... AACGTCGTGCTGAACTTAGGAATAGTGATGTCCAACTATCT 1691993 37 100.0 37 CCAACTATCT ..................................... GAAATCGCTGTATTCATTTGGTTTTTTGAATTGGAAA 1692067 37 100.0 37 GAATTGGAAA ..................................... AAATCTACACCGTTTATTTTAACCGCCTTCATAACAA 1692141 37 100.0 36 TTCATAACAA ..................................... CAAGCTGTTCTGGTGGCAACGATGCGAGTAAATTCT 1692214 37 100.0 38 AGTAAATTCT ..................................... ATATACTCCTTACCCCCTATCTTCTTGCTTGAAATTGC 1692289 37 100.0 38 TTGAAATTGC ..................................... TCATCCTCTCGTACAGCGTCCTCGTTGAAATGCCGAGA 1692364 37 100.0 38 AATGCCGAGA ..................................... TCCCTCTCCCCACTCTCCATATCCTCGATAACGCTGAG 1692439 37 100.0 39 TAACGCTGAG ..................................... ATTATCAGAGGTGTTGTAATCAAGGACGAGGAGCTGGAT 1692515 37 100.0 37 GGAGCTGGAT ..................................... ATATCAGCTCTTTTGTGAACTCATCCGTATAGTATGT 1692589 37 100.0 38 TATAGTATGT ..................................... AATATCTGATTTATCAGGGCGATGCTTATCTCGGAGAA 1692664 37 100.0 39 TCTCGGAGAA ..................................... AACTGATACCACAACTGGTGCACCAACTGAGGTTGCCGC 1692740 37 100.0 37 AGGTTGCCGC ..................................... CAGTAAACATTGACGGCCAAATTTATCAGGGAGACGT 1692814 37 100.0 38 AGGGAGACGT ..................................... ATAAATTCCTGATACATATTATTTGAATCAGAACCCAC 1692889 37 100.0 38 CAGAACCCAC ..................................... ATTTTATCTGCATCTCCACACTACCTCTGCAGGAAGCT 1692964 37 100.0 39 GCAGGAAGCT ..................................... CAATAATCTCATCATTGCCTGGAATTTCCGAAGTTAGGG 1693040 37 100.0 36 GAAGTTAGGG ..................................... TGCAGCCACCAAGTTTGGTGACTTGGCAACCATCTT 1693113 37 100.0 38 CAACCATCTT ..................................... GATACATGCAAAATATCTTGAGTGAGGTGGTTTGATGG 1693188 37 100.0 37 GGTTTGATGG ..................................... AATGCATCAGATTCATACTCAAGAACCTTCTTAACAA 1693262 37 100.0 38 TTCTTAACAA ..................................... ATATTTTCGTATCCTTGAGAGTATCAGCGATCGATTCG 1693337 37 100.0 35 GATCGATTCG ..................................... TCATATCACCTGATGAAATTCATCCTTTTCCTTTA 1693409 37 100.0 38 TTTTCCTTTA ..................................... AATCACGACCCATTCATATCACCTCTTCTCCAAACCAA 1693484 37 100.0 38 TCCAAACCAA ..................................... TAAATGCTTTCTCACTTCCCTCTTTCTCATATATCTCT 1693559 37 100.0 36 ATATATCTCT ..................................... GAGCTATCAGCAGATGGGCGAGAGTTTAGGCGGCTT 1693632 37 100.0 39 TAGGCGGCTT ..................................... TGCAAAATAGGGGTGGTAGTAATGCGGTATAATTTCAGC 1693708 37 100.0 38 TAATTTCAGC ..................................... ATGCAAAAGAGAAGTTCGGGTAGTGGTAGTGGGGAAGG 1693783 37 100.0 37 GTGGGGAAGG ..................................... GTTGCTTGGCCTGCCATCTGAGTCATATGCCCCATCC 1693857 37 100.0 38 TGCCCCATCC ..................................... ATGTCGTTGAACTGGGCTTGGATTTCTCTTATAATCGG 1693932 37 100.0 38 TTATAATCGG ..................................... CCCTCGAAGCGGGCCTGCTGCTTGAACCTTACGGTTGT 1694007 37 100.0 39 TTACGGTTGT ..................................... ACTGCAGGGGTGTGGACACAAGTGGACCGCAACAGAGGT 1694083 37 100.0 CAACAGAGGT ..................................... CAAGTCTTCG ========== ====== ====== ====== ========== ===================================== 43 37 38 GTAAGAAAGGGAGGCTCCTGAAAATGGAGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [344,346] Score: 0/0.18 # # Final direction: F [4.87,0.41 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1226627 31 100.0 36 GACACGCAGG ............................... AGAACAATAAGAGAGCCGATTGATGAGAACGCAGAC 1226694 31 96.8 36 GAACGCAGAC ..............................A GATATGATACACCTGAAACATTCTTTTACATGGACC 1226761 31 100.0 TACATGGACC ............................... CGGCGGATATA ========== ====== ====== ====== ========== =============================== 3 31 36 GTTTCTAATGTACCGTAGAGGAGTTGAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [283,97] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1117872 30 100.0 36 GTCCCAATAT .............................. AATCGTATGAGGTTCCTGCAGTTACGTCGTGAGTGA 1117938 30 100.0 37 TCGTGAGTGA .............................. AAACTTCCTATATCGCCAGCAATATCAATCACAATTT 1118005 30 100.0 37 ATCACAATTT .............................. GCAGCCCCTGCCTTTCCAGGTGCAGCTGCCCAGTCAG 1118072 30 100.0 35 GCCCAGTCAG .............................. GTGGTCATGGTCTGGCGATGATGTTCCACTTTTAA 1118137 30 100.0 35 CCACTTTTAA .............................. AGTAGCCCAATTGGAGCGCGATTATGACTATGCTT 1118202 30 100.0 39 GACTATGCTT .............................. TCGCCACCAAGCACTCCATCTCCTTGATAGTCCAGCCCT 1118271 30 100.0 37 GTCCAGCCCT .............................. GATTCTTAGTTCATTAGCCCCAACCTGCCACTCTTGT 1118338 30 100.0 36 CCACTCTTGT .............................. TAGAACAAATCAAGGAACAACTAAAGAACCTATCCC 1118404 30 100.0 39 AACCTATCCC .............................. CTGGGGTTAAAAGACAAGTTCAACCTCAGCAAAAATGTC 1118473 30 100.0 37 CAAAAATGTC .............................. GGATGAACTGAAGTTTCTACTGAGCGAGCTCATAAAG 1118540 30 100.0 37 GCTCATAAAG .............................. CATCCGCAGGCTTCACGTACCAGGAGAACCTGTTCGT 1118607 30 100.0 36 ACCTGTTCGT .............................. ATATTATATACGCTGAACCAGTTTGTGAATGACGCT 1118673 30 100.0 37 GAATGACGCT .............................. TTGGATGTCATAAGATTTACGGACTTCACACCGAGTA 1118740 30 100.0 37 ACACCGAGTA .............................. TATCCAGTCCACGACCTTTATGTGTCCCGTATCCTGT 1118807 30 100.0 37 CGTATCCTGT .............................. ACTTCTCAATTCCACGTGCCTCTACAAATGGACAAGC 1118874 30 100.0 37 ATGGACAAGC .............................. CCACAACCTCTGAACGAATTATTTCTCCAGCAGAAAC 1118941 30 100.0 CAGCAGAAAC .............................. AGGAGCCAAT ========== ====== ====== ====== ========== ============================== 17 30 36 CTTTCAATTCTATTTTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [89,485] Score: 0.18/0.18 # # Final direction: R [0,5.45 Confidence: HIGH] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 994360 29 100.0 37 ATTGGCTCCT ............................. CTTCTGGAGTGCAAAGTTTGGAAAAGGCTTGAATGGT 994426 29 100.0 34 CTTGAATGGT ............................. CAGGCTTTTATTGAGCGTTGGTTTGTTATTTTTA 994489 29 100.0 38 GTTATTTTTA ............................. CCAGTTTAAGCTTAACCTCCCACCTGTGAACGTTGAGA 994556 29 96.6 38 AACGTTGAGA .....................G....... CTTCACGGCTGGTTGGAGGGTACTAGTCTATGATATGC 994623 29 100.0 38 TATGATATGC ............................. CTGGAGCGATGGCTCTCGCACTCGGTCTCTTGTTCAGC 994690 29 100.0 37 CTTGTTCAGC ............................. CCATAGCTAGGAATCTTGGCTTTCTCTGGAGAAGGAG 994756 29 93.1 GGAGAAGGAG ..................A.........T TGAAAGGCA ========== ====== ====== ====== ========== ============================= 7 29 37 GTTCCAATAAGACTAAAATAGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [611,47] Score: 0.18/0.18 # # Final direction: F [5.86,0 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1379598 30 100.0 38 NNNNNNNNNN A.AG.TT..T.CAC................ AAAGAAAATCCAAGAAATGTCCACGCCCTCCGAAGTCA 1379666 30 100.0 37 NNNNNNNNNN .............................. TTATTTAGCATTCAAAAAAGGAGTTCTTGTAAATACA 1379733 30 100.0 36 NNNNNNNNNN .............................. AAGTGAGGAGATGGGAAAGACATGAGGAAATTCTAC 1379799 30 100.0 36 NNNNNNNNNN .............................. TGCTGGATTTCCCTTCCTTATTTTAATGTTCATTAC 1379865 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 36 GTTTCAACTCCACTACGGTACATTAGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [17,285] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 637738 30 100.0 39 AAAGCTCCCT .............................. TAACCTTAAGCGGGAGGGAACTTGTTGAGTTCATAAGGG 637807 30 100.0 38 TTCATAAGGG .............................. ACGACGTAATCAACCTCGAAAAGGGTTCCGCACCTGTT 637875 30 100.0 38 CGCACCTGTT .............................. CGTGCTCTGGGTACGCTGTTGCTACGATGTGTGCAGGG 637943 30 100.0 37 GTGTGCAGGG .............................. TATAGATGTCGTCAAATCTATATAGATGCCGGTGGAC 638010 30 100.0 37 GCCGGTGGAC .............................. GAGAGAAACGACAGGCTTACCTCCACTTTCAAGCCAT 638077 30 100.0 37 TTCAAGCCAT .............................. TCAAGTTGATAAAATCATTGCCTGCTCAATATCTTTT 638144 30 100.0 37 AATATCTTTT .............................. AGCTCGGAAGAGGGCAGGATAGGAAAGTATGACGCAA 638211 30 100.0 37 TATGACGCAA .............................. TGTGTTGCATCGGACATGTTCAGGTATGAAATCCTTC 638278 30 100.0 37 GAAATCCTTC .............................. TTCTTCCTTTCCAGCTCGTAACCCAGGGATTCGAGCC 638345 30 100.0 38 GATTCGAGCC .............................. CGGCGAGCTAGATAAGAGGGAGGAGGACGCATTTAGAG 638413 30 100.0 38 GCATTTAGAG .............................. ACGCTAACGTCAGCATGGAAGACGTTTTGAAGGCTATA 638481 30 100.0 36 GAAGGCTATA .............................. AACTTCGTACTCGACTAGCTCCTCCTCATCGTCCTC 638547 30 100.0 38 CATCGTCCTC .............................. ATTTAAGATAGACGGGAGAGTACCCATGTAGCTGTCAA 638615 30 100.0 38 TAGCTGTCAA .............................. GAGTTCTATGTCGACTTTCACACTTGGGTTCCTTCTGT 638683 30 100.0 42 TTCCTTCTGT .............................. AAGCTTGAGGTTGTTCATTATAACGTGAAATGGGATGATGTT 638755 30 100.0 36 GGATGATGTT .............................. TCTGGAAGGAAGGCAATACCAAAATCAGAGGTTGAG 638821 30 100.0 AGAGGTTGAG .............................. GAGGTTATCG ========== ====== ====== ====== ========== ============================== 17 30 37 GTTCCAATAAGACTATAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [600,182] Score: 0.18/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 156460 31 100.0 35 NNNNNNNNNN ..............................C AGTCAGATTGAAGTTATCGTCAACTTCAAAATACG 156526 31 100.0 43 NNNNNNNNNN ............................... TGCTTTATCAGAGAATAGTATTCTTTCTATGTCTTCATAGTTT 156600 31 100.0 40 NNNNNNNNNN ............................... CTTGATAGTATCTGTTTTCCGCGTATTCCACGATTCTTTT 156671 31 100.0 36 NNNNNNNNNN ................AGT.GAG.TG..A.. TCGGTGATAAAGGAGCATTTTTCACAAAAGAAATCA 156738 31 100.0 1 NNNNNNNNNN ...T.................TAAA..TGA. NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 5 31 38 GTTCCTAATGTACCGTGTGGAGTTGAAACCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.84%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [313,27] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 244561 29 100.0 39 CAGAACTTGA ............................. ATGACATTTCAGGAGGTGGAGCATGATTACTATCTTTTC 244629 29 100.0 40 CTATCTTTTC ............................. AGTATAAGCTTTCTAAGCCTTGAAAGGAAAAGCTCCTCGC 244698 29 100.0 36 AGCTCCTCGC ............................. TCTCTACCTTCCTTTCAACCTGTATTGCTATGTCCG 244763 29 100.0 GCTATGTCCG ............................. CCTGCGTGCCT ========== ====== ====== ====== ========== ============================= 4 29 38 GTTTCAACTCCACACGGTACATTAGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [16,548] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_002163 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1455124 37 100.0 29 NNNNNNNNNN .A................................... TATGGCAGTTTTTAAAAGAGCTTGGCGGT 1455190 37 100.0 29 NNNNNNNNNN ..................................... TTTCCAAAGTTTCATTAGTTGAATTTAAC 1455256 37 100.0 29 NNNNNNNNNN ..................................... CTACAAGAATGAGGATGATGATATTTTAC 1455322 37 100.0 29 NNNNNNNNNN A.................................... ATGAGTGTGCTAAAAAAAATGGACTTAAA 1455388 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 5 37 29 TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.38%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [120,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 279264 29 100.0 36 TACAATCTGC ............................. CATCTGCAACATATTCAAGTTCAGCTTCAAAACCTT 279329 29 100.0 36 TCAAAACCTT ............................. TTCGTCAAGCTTTACCTCAAAAGTCCTCTCAAACCT 279394 29 100.0 38 TCTCAAACCT ............................. AATAATCAACAACTCTTTGATTTTGTGAAATGGAAGAA 279461 29 100.0 37 AATGGAAGAA ............................. AGAACTCTCAGAAGAACCGAGAGCTTTTTCTATTAAC 279527 29 100.0 TTCTATTAAC ............................. CCTGCGTGCC ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAACTCCACACGGTACATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [39,292] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 150418 29 100.0 38 AAACCCAAAA ............................. TAGAGCTCGAAGTAGACTTTAACCCCAGCGGTTCCACT 150485 29 100.0 38 CGGTTCCACT ............................. AGGTCTGGCTCCTCATCCTCAGGAGGCTTCTTAAATGG 150552 29 100.0 43 TCTTAAATGG ............................. GACTTGAAGAAGGATGTAATAACATATGATGACTTCATAGAAG 150624 29 100.0 47 TTCATAGAAG ............................. ACTAAGTTGCTAACTAGAGTATTGCTCATCCAAGAATCATACTTCAA 150700 29 100.0 39 CATACTTCAA ............................. TATCTGAAGCACTATTGCCAACAAATTCTGGAACAATCC 150768 29 100.0 38 GGAACAATCC ............................. TTGATGACCTTGCCCATTTAGAGTATGACCCAGAAACT 150835 29 100.0 36 CCCAGAAACT ............................. CTGATTTATACGGGTTCTCTGGTTTTTCTACCTCAA 150900 29 100.0 38 TCTACCTCAA ............................. ACTTTCACGAAGACATCAGGGTTTCTCCGATTCCCTCT 150967 29 100.0 42 GATTCCCTCT ............................. ACGTCAATTCCATAGCCCAAATTCTCAGCTACGTCGAATTCA 151038 29 100.0 40 GTCGAATTCA ............................. GGCGTGGAAACATCCCAGCGAACGGTTACGACGACATAAC 151107 29 100.0 42 ACGACATAAC ............................. AGCGTCCAGCCACTTGCTGGAACATTTATTGTTTCTAGCTCG 151178 29 100.0 49 TTCTAGCTCG ............................. ACAGTCGTATACAATCCTTGCAGACATGTGCCCGCAGATGAACTTTCCA 151256 29 100.0 38 GAACTTTCCA ............................. CATAAAATCTAATAAGGATATCTGTAGACATCAAGCGA 151323 29 100.0 51 CATCAAGCGA ............................. TCAACCTTGTCATCAGCAACCGTGTAGGTTATTGTGTACTTTGGGGTTTCC 151403 29 100.0 37 TGGGGTTTCC ............................. AAACTGTCGAGGCCTGCGTTTTGCAGGAACAACCCAA 151469 29 100.0 39 AACAACCCAA ............................. ATAGTAGCATTACTACGACATACTCTGGGCTCTCTGAAT 151537 29 100.0 37 CTCTCTGAAT ............................. CTCAGCTCTTCTGGGGTTATGACGCCTCCCTCTATAG 151603 29 100.0 42 CCCTCTATAG ............................. AAGAAGGGTAGGAGGAAGAGGAGAGAGGAGTTCTTTGGCTGG 151674 29 100.0 CTTTGGCTGG ............................. ATTAATCCCG ========== ====== ====== ====== ========== ============================= 19 29 40 GTTTCCGTAGAACTTAGTAGTGTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [528,493] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 32972 29 100.0 38 AGATGACCAA ............................. GCTAGGGCATTACTAGAAAGAGCAAAAAGCAGGTACAT 33039 29 100.0 38 GCAGGTACAT ............................. AAGAAGTCAGGGATTTCATAAGAGACGAGGATTCTCAA 33106 29 100.0 37 GGATTCTCAA ............................. TCATAGCCATCGGCTGGCTTAGACGTAAGCCTGATTT 33172 29 100.0 38 AGCCTGATTT ............................. CTCACATTCCTCGAGCAGAACCCGCACTTACTCACCTT 33239 29 100.0 40 TACTCACCTT ............................. TTTGGCGATGATGGATCAGGAACAAAAGGACGCATTCTTC 33308 29 100.0 34 CGCATTCTTC ............................. AATACTATGAGTGCATAATTAGTATCGAGGTGAT 33371 29 100.0 38 TCGAGGTGAT ............................. GTAAGGGAGGCTTTCGCGACGGCAATGGTTACATATAG 33438 29 100.0 39 TTACATATAG ............................. CTTATAGACGGGAAAGAGATACACGTTATAAAAGAGCTT 33506 29 100.0 39 AAAAGAGCTT ............................. GCTATTGGAGCAAGGGAAATTCAGCTATACAGAAGACAT 33574 29 100.0 43 CAGAAGACAT ............................. TGGAATAGTGTTATTGCTAGAGTTTTTAGTGGAATTGTTGAGA 33646 29 100.0 39 ATTGTTGAGA ............................. GAGTTAAGAAGAGAGGCATTAATGTTTGCAGAATATCTT 33714 29 100.0 43 AGAATATCTT ............................. ATGAAAGCAGAAACTTGGAAGAACATACTGTACATGTCAGCTT 33786 29 100.0 37 ATGTCAGCTT ............................. GAACGATGTTGATATGAAGTTCTCATGCCAGATTATC 33852 29 100.0 39 CCAGATTATC ............................. CTAGGGAATACCTAAGTGCTACTAACTCAAGAACACTTT 33920 29 100.0 37 AGAACACTTT ............................. AGCTTAAATCACTGGGTTATGAGGTTGAACCTATGAC 33986 29 100.0 38 AACCTATGAC ............................. TTACGAACTTCTTGAGTAAAGAAATCACGCAGGCAGGT 34053 29 100.0 GCAGGCAGGT ............................. TTTTGGGTTT ========== ====== ====== ====== ========== ============================= 17 29 38 CTTTCCACACTATTTAGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [120,698] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3119185 36 100.0 38 AGTCGTCGTA .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3119259 36 97.2 40 GGCGGTTCAA .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3119335 36 97.2 40 TCGGCGGTGT ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3119411 36 100.0 37 GGCGATATGC .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3119484 36 97.2 36 TCTGCGTCCA .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3119556 36 100.0 35 CACCATGAGG .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3119627 36 100.0 38 GTGCCGTCAG .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3119701 36 100.0 40 TGGCGTACTA .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3119777 36 100.0 35 CCATCGTCGG .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3119848 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3119921 36 100.0 38 CGCTCAAAAT .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3119995 36 100.0 37 GAGTGATAAA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3120068 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3120141 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3120213 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3120285 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3120359 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3120433 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 18 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,1034] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 933763 29 100.0 41 NNNNNNNNNN ....T..T..........C.......... GAAGTCCTCTACTACGAGAATGGCGTCTACAGGTTCAACGG 933833 29 100.0 43 NNNNNNNNNN ............................. ACAGTTTGCCGAGCAGTTGGGAGCAACTTCCATAGTCTTTCCT 933905 29 100.0 37 NNNNNNNNNN ............................. ATATAGGAGTAGAGACCATAAAAACCTTCCCCTACTA 933971 29 100.0 41 NNNNNNNNNN G............................ GCGACGAATTATGGAGCCACGCCCGAGCGGGTGAGCATTCC 934041 29 100.0 46 NNNNNNNNNN G............................ CTCTTTGGGAACTTTTAGAACAGGCAAAAGAGTTACTTAGGGAGCT 934116 29 100.0 58 NNNNNNNNNN G............................ TTTGTTATTATAGGTCAGCGAATGGGGTGGTTATGGCGGACGAGGAGTGGCAGAGTAG 934203 29 100.0 37 NNNNNNNNNN G............................ AAAATGCTAGGGAAATCCAAGAGATTGGAGAGTTTCC 934269 29 100.0 38 NNNNNNNNNN G...........C.A.............. CTCAATTGCCTTGTCTAGTATAAATCTACCCAGCCATG 934336 29 100.0 40 NNNNNNNNNN G............................ GGTCTGCAGGGCATGTGGATCACCTTTCTATTATTCACAT 934405 29 100.0 47 NNNNNNNNNN G...........C.A.............. CCTTGCAGAAGAATGGCTGGAGACTGCAGGAAAGTTGGTAGTGTTTT 934481 29 100.0 42 NNNNNNNNNN G...........C.A.............. TAGAGGGAAAGTTGTGATATGCAGAGCGGATGAGAACGAGTA 934552 29 100.0 39 NNNNNNNNNN G...........C.A.............. AGAAATTGTTTCAGAAATGTCAATAGTGGACTTGAACAG 934620 29 100.0 42 NNNNNNNNNN G...........C.A.............. AAGGAGCCGTCTCCAGGAGCCCATTCCCACCCTTCCTTGTAC 934691 29 100.0 40 NNNNNNNNNN G...........C.A.............. CTACTAGCAAGGCTGGCAATGTACACAGCAGTAGGGTACA 934760 29 100.0 40 NNNNNNNNNN G..........CC.A.............. TAGTTGTATATTGGGCATTGGTTGATGACCTTACTCTCCC 934829 29 100.0 36 NNNNNNNNNN G...........C.A.............. CCACAATACGGAGCCAGCAACAGCTCTTGTTTTGTA 934894 29 100.0 38 NNNNNNNNNN G............................ ATAATATAAAATAGGAATAAGAGAGGGAACGGAAAGTG 934961 29 100.0 37 NNNNNNNNNN ............................. TTTTGTTGGGGGTGGTGAAGGATGAGGGTAGTAATTG 935027 29 100.0 49 NNNNNNNNNN ............................. TTGACAATCGGGAATTCTCCGGTGAGGGGTAGTCTGGGCAACTCTTCAA 935105 29 100.0 38 NNNNNNNNNN ............................. GCCAAGAAGCCTGAAAAGTCGGAGTGGGAAAAGATAAT 935172 29 100.0 42 NNNNNNNNNN ............................. CGTAGATCCCTCCTATGAGGTGTATGTGCTTGCCAGAAAGTT 935243 29 100.0 41 NNNNNNNNNN ............................. ACGGAGCTCGGGATTAGTCCTGGGACTGTTAGGAAGGAGTT 935313 29 100.0 36 NNNNNNNNNN ............................. AAGTACGTTATTACCTCACTCGTAAACTCTTCCCGT 935378 29 100.0 48 NNNNNNNNNN ............................. ACGGGGTTGATGATTACATTAAAGTTCCTTACAGTTCTTCTTTAAACT 935455 29 100.0 40 NNNNNNNNNN ............................. AGAGAAGTTTTACCTTCCGAGCTCGTGAAGTATATACAAT 935524 29 100.0 36 NNNNNNNNNN ............................. TGAAAAGGGTTATAAGTTCTGGCGGTTAAGATTACT 935589 29 100.0 36 NNNNNNNNNN ............................. CTGGTTCGGTGGAGTGCTTGTGGCTTGGTTCTACTT 935654 29 100.0 36 NNNNNNNNNN ............................. AAGCTGTCGCCCTTCCTCACCACGGCAATTAAAGTA 935719 29 100.0 39 NNNNNNNNNN ............................. ATTAGCGAACGGCATGGTTAAGGAGGTCGGCATAAAGTC 935787 29 100.0 38 NNNNNNNNNN ............................. CTACTTCATTCCGTCTCCCTCTTTCTCTTATCACCGCC 935854 29 100.0 45 NNNNNNNNNN ............................. TAGGACTTCGCCGAGCCTTGCACCAGTCCAGCAGGCGTCTTTCCA 935928 29 100.0 47 NNNNNNNNNN ............................. CTTGACGAGAGAATAGTCCAGAAATTAAGAGGAATGGGATACACGAT 936004 29 100.0 36 NNNNNNNNNN ............................. GTGTTACCGTAGCACAGAAGGGTAGCTTCCGTGTCT 936069 29 100.0 41 NNNNNNNNNN ............................. GCTGCATTCAATGCCGAACCTGCAACTATGCTTTATCTCCT 936139 29 100.0 40 NNNNNNNNNN ............................. CCTATCGGCCTCAAAGACGCAAAGGCATTCTACGATTACT 936208 29 100.0 43 NNNNNNNNNN ............................. TGGAACACCTCTACAAATAATGTTGGATAATAAACGTTTCCGT 936280 29 100.0 36 NNNNNNNNNN ............................. ATGTTACATTGACACTATCAGGAGCAAGCCACATAA 936345 29 100.0 36 NNNNNNNNNN ............................. CTCTAGCTACTTCTGCCGGCTCTTCTAGGGATAATA 936410 29 100.0 37 NNNNNNNNNN ............................. ACGTGACTAAGTACAGGGTTATCGCAAAGGTTGCCTT 936476 29 100.0 37 NNNNNNNNNN ............................. AAGGAGGAGGTGAAGGGGATGAAGATTGTTCTAAAAA 936542 29 100.0 38 NNNNNNNNNN ............................. AAGCTGGGGCTTGATACTGCGGACAGGATGGATAGTGC 936609 29 100.0 37 NNNNNNNNNN ............................. CTCATTGATGGGGAGGATGGGGAAGCTCCTTGCAAAA 936675 29 100.0 38 NNNNNNNNNN ............................. AAGAAATACATTGACAGGAAAGTCATCTATTGGGAGTT 936742 29 100.0 36 NNNNNNNNNN ............................. ATAGTAAAAGAGGAGCAGTACATCAGCGATGACGAG 936807 29 100.0 37 NNNNNNNNNN ............................. AGAGAATCATAGAGGAGGAGGGTGTGGAGACTGCTTA 936873 29 100.0 40 NNNNNNNNNN ............................. CGGACACTGTGCAGAAGCTCAGGCAAGCCAAGAGTAGTTC 936942 29 100.0 41 NNNNNNNNNN ............................. CTTGGGAACTGGGTACGGCTGGGGAACTGGATAAGGCTTTT 937012 29 100.0 40 NNNNNNNNNN ............................. ATATTATCCAGCGTCCTACCGTCTTTCGGCACCAGGAAGA 937081 29 100.0 36 NNNNNNNNNN ............................. CTCAAAGACATCTAATAGGCAAATAGGCATAGCTTT 937146 29 100.0 37 NNNNNNNNNN ............................. CCAGCCTCCTCCCTTGCCTGCTCTGGGAGGAGTTCCC 937212 29 100.0 37 NNNNNNNNNN ............................. GAAGGGGTGATGGCTTATACATTGTAAGGCCTGGGGA 937278 29 100.0 37 NNNNNNNNNN ............................. ACGTTTGGGTAATCCCAGTAAGGGATGAGGCAACCGG 937344 29 100.0 37 NNNNNNNNNN ............................. AAAATGCTTCGATGGCGTGGAGTACCTTAACAGTCTT 937410 29 100.0 41 NNNNNNNNNN ............................. ACTGTTATGTTGACGCGCTAACACACTCACACGCCCAGTAT 937480 29 100.0 38 NNNNNNNNNN ............................. CGGATAGGGTCACTAAGTAACATTGGCCCCCCTTATGA 937547 29 100.0 38 NNNNNNNNNN ............................. CGAAGTGATAGAATGGTCAGAGTACTGGAAATTACCAG 937614 29 100.0 38 NNNNNNNNNN ............................. CCAGAAAGGGGAACCTACAGGGCTGTAGTAATCAGAAT 937681 29 100.0 37 NNNNNNNNNN ............................. GCGATTTCCGCAACTACCTTGCCTCCTGGGGGAATTG 937747 29 100.0 36 NNNNNNNNNN ............................. AAGACATTGTTCCTGATGATGATAAGTTGGAAAGAA 937812 29 100.0 37 NNNNNNNNNN ............................. AACAACTCCATTTTTATCACCTCGTCTGGACGTTAAA 937878 29 100.0 39 NNNNNNNNNN ............................. GCTGTAAAAGGACAGGGGAAACTTGTTGTGGAGGTTTAC 937946 29 100.0 39 NNNNNNNNNN ............................. TTGTAGACAGTGTTTTTGAAGTCAAGCGTCAGTATCAAC 938014 29 100.0 39 NNNNNNNNNN ............................. GTATTTCGAGTCGGATTTCATCTGGTATGCAAGAAACCG 938082 29 100.0 37 NNNNNNNNNN ............................. CGTTGCTTTCTTAGACGTTGAGGGAGCCGACACGACG 938148 29 100.0 37 NNNNNNNNNN ............................. AAATTAAGTTTCTGCTCCATGCAATTCCACCTCCTTT 938214 29 100.0 39 NNNNNNNNNN ............................. CCCAGGACTGCCCTTCTCAGCAATCCCCAGGAGCCTGTA 938282 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 39 CTTTCCACACTATTTAGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [58,526] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3121862 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3121938 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3122013 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3122086 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3122158 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3122230 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3122303 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3122375 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3122436 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3122513 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3122585 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3122661 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3122738 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3122811 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3122882 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3122955 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3123029 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3123102 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3123173 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3123248 36 100.0 34 NNNNNNNNNN .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3123318 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3123390 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3123467 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3123541 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3121938 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3122013 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3122086 36 100.0 36 CACGCTCCAA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3122158 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3122230 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3122303 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3122375 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3122440 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3122517 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3122589 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3122665 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3122742 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3122815 36 100.0 35 ACGCTGCCCG .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3122886 36 100.0 37 GATTCCGAGT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3122959 36 100.0 38 GGTTTCACGC .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3123033 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3123106 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3123177 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3123252 36 100.0 34 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3123322 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3123394 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3123471 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3123545 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 23 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3948364 36 100.0 54 NNNNNNNNNN TGC..........AA....T........G....... CACCTGCGGACAAGTCGTCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCAG 3948454 36 100.0 48 NNNNNNNNNN ........................G...GTG..... CACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3948538 36 100.0 36 NNNNNNNNNN ...A................................ CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3948610 36 100.0 36 NNNNNNNNNN .................................... CAAAGGCGGCCTAAACACCGACGGACTCAGCAGCGC 3948682 36 100.0 33 NNNNNNNNNN ..C.A............................... CAAAGGCGGCACCGGCGGGGCCGGCGACGACTC 3948751 36 100.0 54 NNNNNNNNNN .GC......G...........A.....GG....... CAACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGG 3948841 36 100.0 42 NNNNNNNNNN ..T......TGA.......CAA.....T.A...... CCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTT 3948919 36 100.0 36 NNNNNNNNNN TGC......GG.........AA.....GG....... TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG 3948991 36 100.0 36 NNNNNNNNNN .GC......GG.......ACAA......G....G.. TGCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGG 3949063 36 100.0 48 NNNNNNNNNN ..C............G...GTG...........G.. CGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAGGCGG 3949147 36 100.0 36 NNNNNNNNNN ..C..........................G...... GGCCGGCGGTAGCGGCGGGGCCAACTTCAACGGCGG 3949219 36 100.0 72 NNNNNNNNNN ..C................................. CAAAGGCGGCATGGGCGGCATCGCTGGCGACGGCGGGCCCGGCGGTGACGGCGGCAACGCCGGGGTCGGAGG 3949327 36 100.0 54 NNNNNNNNNN A..A.........AA.....A........G...... GACCGGCGGCACAGGCGGGGCCGGCGGCAACGCCGGCGCCGGCGGCCTAGCCAA 3949417 36 100.0 87 NNNNNNNNNN ..C...........CA....A..CG....T...... TGACGGCGGCCAAGGCGGTAACGGCGGCCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCGGCGGCCCCGGCGG 3949540 36 100.0 69 NNNNNNNNNN ...A.....GG.........A..C............ CACCAACGGCTCCGGCGCCGGCGGGGCCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAG 3949645 36 100.0 57 NNNNNNNNNN .......A...A.....................G.. CGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3949738 36 100.0 36 NNNNNNNNNN ...A................................ CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3949810 36 100.0 27 NNNNNNNNNN .................................... CACCGGCGGCAAAGGCGGCATGGGCGG 3949873 36 100.0 27 NNNNNNNNNN ..T..CT...GA......GC.......TGA...... CAACGCCGGGGTCGGAGGAAAAGGCGG 3949936 36 100.0 45 NNNNNNNNNN ..C.AA.....A........G......G........ CACAGGCGGGCCCGGCGGCAGCGGCGGCGCGCCCACCGGCAGCGG 3950017 36 100.0 27 NNNNNNNNNN ..C........AA......G.......TGA...... CGATGGCGCCGACGGAGGGGCAGCCAC 3950080 36 100.0 1 NNNNNNNNNN .GG..T....GA.......GA...T..T.A...T.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 45 CAACGGCGGCACCGGCGGCACCGGCGGCACCGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.10,-14.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [29-50] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [16.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2617,710] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_001880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 437 30 100.0 35 TGTCAATAAG .............................. TCAATAGCTTCTACTCCTTCAGGCACAGCTTCTTT 502 30 100.0 37 CAGCTTCTTT .............................. AAAGAAGTCCTTTATCTTAGAAACCTTCTTTTTGGAC 569 30 96.7 36 CTTTTTGGAC .............................G GGAGTTCTAAAGAAGAGGTAATCGGGTATCTTTTCG 635 30 100.0 TATCTTTTCG .............................. CGTTAATACC ========== ====== ====== ====== ========== ============================== 4 30 36 CTTTCTATCCCATATATGGGAACTAAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [438,477] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_002655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3665521 30 100.0 31 NNNNNNNNNN ................AT............ GCGGCACGCTGGATTGAACAAATCCCTGGGC 3665582 30 100.0 31 NNNNNNNNNN .............................. AACCGAAACACACGATCAATCCGAATATGAG 3665643 30 100.0 31 NNNNNNNNNN .............................T TTGGTGACAGTTTTTGTCACTGTTTTGGTGA 3665704 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,97] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_002663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1322127 36 100.0 30 TATTATGTCA .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 1322193 36 100.0 30 TTTCTCGTAC .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 1322259 36 100.0 30 AGCGTGGCAA .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 1322325 36 100.0 30 AAGCTTTCCT .................................... TAAACCACTAACCGATAGCCAATTATTAGC 1322391 36 100.0 30 AATTATTAGC .................................... CACTTTTAACACTCACATCAGTGACAAGGT 1322457 36 100.0 GTGACAAGGT .................................... CTCGTGTCCCT ========== ====== ====== ====== ========== ==================================== 6 36 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 94% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [325,235] Score: 0/0.18 # # Final direction: F [0.77,0 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 339740 32 100.0 36 GATTTTCGCT ................................ TCACTGAAGACTCCACATCCAATGAGTGCGACGATT 339808 32 100.0 34 TGCGACGATT ................................ CTTACATCAAATTCCACGCACTCAGGCACACATC 339874 32 100.0 36 GGCACACATC ................................ GAAGGAAATGAAGTTTTGATAAACTCCGTCTATACC 339942 32 100.0 35 CGTCTATACC ................................ CTAAAATCATCCGCCCAGCTCTGTAAGTTAGCCTT 340009 32 100.0 35 AGTTAGCCTT ................................ GGATTTTACGAGACATGGAGCGATATATAAACGCG 340076 32 100.0 36 TATAAACGCG ................................ TTAAGGGAGATGAATAACGATGACTAAAATCTTCAT 340144 32 100.0 34 AAATCTTCAT ................................ CCCTTTTTGTCTTTGTCGAAATATGCCGCCTTTC 340210 32 100.0 35 GCCGCCTTTC ................................ ACTAACTAGGGGGATATGATCATGTTTAACCTGAG 340277 32 100.0 34 TTAACCTGAG ................................ AAGAATACGCGCGCAACAAAAAAACTTTTAAAAA 340343 32 100.0 36 CTTTTAAAAA ................................ TATTTGTTGATCCCAAGTATCAATACCCCGACTCTT 340411 32 100.0 34 CCCGACTCTT ................................ TCTCAACGTTGCCCTCAGGGCGTACTCTTTTACT 340477 32 100.0 33 CTCTTTTACT ................................ TTGCGTGTAAATCATCACGACGCCCTGTCTTTG 340542 32 100.0 35 CCTGTCTTTG ................................ TTGATTTGTTATTGCCCTATCTAATTTTTGATCAA 340609 32 100.0 33 TTTTGATCAA ................................ TTCGAAGAGAATCAAGATCTGATACTGCTTCCA 340674 32 93.8 36 ACTGCTTCCA ..........T....G................ TTCAAAAATTACAACCTCATGAGGTGTTAAATTCAC 340742 32 96.9 TTAAATTCAC ...........T.................... ATGCCTCTC ========== ====== ====== ====== ========== ================================ 16 32 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [404,293] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_002695 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3598223 30 100.0 31 NNNNNNNNNN ................AT............ GCGGCACGCTGGATTGAACAAATCCCTGGGC 3598284 30 100.0 31 NNNNNNNNNN .............................. AACCGAAACACACGATCAATCCGAATATGAG 3598345 30 100.0 31 NNNNNNNNNN .............................T TTGGTGACAGTTTTTGTCACTGTTTTGGTGA 3598406 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,97] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 345991 32 100.0 35 ACTGGGCGCT ................................ CATCGGTCTTAAATTCAAGACCTGTAGGATCTCCT 346058 32 100.0 35 AGGATCTCCT ................................ TTTAAATTTGGTTTACTCCACCTAATGTAGTTATT 346125 32 100.0 34 TGTAGTTATT ................................ ACAACCACGCATCGTAAACGATCAGCACAACCAC 346191 32 100.0 35 GCACAACCAC ................................ AATCTGATAAGCTTCCTCAAACCAAGCCCAACAAA 346258 32 100.0 33 GCCCAACAAA ................................ CATCCAGACAACCACAGCAACGAGGAGTTGATC 346323 32 100.0 34 GGAGTTGATC ................................ CAGCCCATTATATACTTAATTCCATTAGCTTTAT 346389 32 100.0 36 TTAGCTTTAT ................................ ACCGGGCTCCAGCATGGCCTGTGGGCGGCACTGGGC 346457 32 100.0 34 GGCACTGGGC ................................ ATCAAAAAAGAACAGTGAAGAGGCCTTAAAAAAA 346523 32 100.0 34 CTTAAAAAAA ................................ CCCGATACGCTCCACAAGATCGACAATCCGTGAC 346589 32 100.0 36 AATCCGTGAC ................................ CAAATGTATCTTTTTCCTGTGTTTCTGCATCAAAAA 346657 32 100.0 36 GCATCAAAAA ................................ CTGCTCGCCGTGACACACCGCATTTGTGTGCATGTA 346725 32 100.0 34 TGTGCATGTA ................................ TCTTAAATCTTTTATCAATTGCTCTCTTGTAACA 346791 32 100.0 TCTTGTAACA ................................ CAAATGTTGTT ========== ====== ====== ====== ========== ================================ 13 32 34 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.80,-3.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [293,662] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_002663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2080625 28 100.0 32 NNNNNNNNNN ............................ TTTTATTAATGATGACGGCATATGGGGTATTC 2080685 28 100.0 32 NNNNNNNNNN ............................ CAAGGGGTTTCTCACCGGAAAAAGCAAAAGCG 2080745 28 100.0 33 NNNNNNNNNN ............................ AGTTGATTTGCAAGAATTTATTAAAAAATATAA 2080806 28 100.0 32 NNNNNNNNNN ............................ GATAATCTCATCTCGCACACAGAAGACAGCAC 2080866 28 100.0 32 NNNNNNNNNN ............................ AAAAGATTTTTTAGCACGTTTTAGCGACTGGC 2080926 28 100.0 32 NNNNNNNNNN ............................ GACGGAAGACCAAAGTTCTTTTGAATAAGAAA 2080986 28 100.0 32 NNNNNNNNNN ............................ ACATATGCAGTAATTGACATGTAAAACCCCTT 2081046 28 100.0 32 NNNNNNNNNN ............................ ATTACTTCACCTCTTGCTCAAATGGGGTAATG 2081106 28 100.0 32 NNNNNNNNNN ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 2081166 28 100.0 32 NNNNNNNNNN ............................ AAGATAGCCGAGCAGGGCGCAAAAGCTATTCT 2081226 28 100.0 32 NNNNNNNNNN ............................ GCTTATGTATCGCGTTTTTTAATTCGACGTAT 2081286 28 100.0 32 NNNNNNNNNN ............................ AGAACCAGAACCTACATTTGTTCCACCTTGAT 2081346 28 100.0 32 NNNNNNNNNN ............................ GAATTTATTAACACTCAAAAGCTCTTGCCCAC 2081406 28 100.0 32 NNNNNNNNNN A........................... ATTATCCAATGAATACATGAATTAAATGATAT 2081466 28 100.0 32 NNNNNNNNNN ............................ ATAAAACCATTTTGTAAACGTTCGATATGCAT 2081526 28 100.0 33 NNNNNNNNNN ............................ ATTCAACAACACACCCCTTACCAGTTCCAGCTG 2081587 28 100.0 32 NNNNNNNNNN ............................ ATTTTTCCCTACAGTTTCGACTTCATATCCCT 2081647 28 100.0 32 NNNNNNNNNN ............................ GTTGGTTGTGGCGGAGCAGTGGATAACGATGT 2081707 28 100.0 32 NNNNNNNNNN ............................ TTATACTTTTTTACACTCAACCGCAGCGATTT 2081767 28 100.0 32 NNNNNNNNNN ............................ AGTCATTCTTTCGCAGATAAAGGGAAAAAAGA 2081827 28 100.0 32 NNNNNNNNNN ............................ TACTCTATCGAACCCCATCCAAAACGGCTGGG 2081887 28 100.0 32 NNNNNNNNNN ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 2081947 28 100.0 32 NNNNNNNNNN ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 2082007 28 100.0 32 NNNNNNNNNN ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 2082067 28 100.0 32 NNNNNNNNNN ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 2082127 28 100.0 32 NNNNNNNNNN ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 2082187 28 100.0 32 NNNNNNNNNN ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 2082247 28 100.0 32 NNNNNNNNNN ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 2082307 28 100.0 32 NNNNNNNNNN ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 2082367 28 100.0 32 NNNNNNNNNN ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 2082427 28 100.0 32 NNNNNNNNNN ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 2082487 28 100.0 32 NNNNNNNNNN ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 2082547 28 100.0 32 NNNNNNNNNN ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 2082607 28 100.0 32 NNNNNNNNNN ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 2082667 28 100.0 32 NNNNNNNNNN ............................ TATCTTCCACATTCCACGTTATATCGATTACA 2082727 28 100.0 1 NNNNNNNNNN ............G............... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 36 28 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [149,265] Score: 0/0.18 # # Final direction: F [1.28,0 Confidence: HIGH] >NC_002737 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 860825 36 100.0 30 NNNNNNNNNN .................................... TGCGCTGGTTGATTTCTTCTTGCGCTTTTT 860891 36 100.0 30 NNNNNNNNNN .................................... TTATATGAACATAACTCAATTTGTAAAAAA 860957 36 100.0 30 NNNNNNNNNN .................................... AGGAATATCCGCAATAATTAATTGCGCTCT 861023 36 100.0 30 NNNNNNNNNN .................................... AGTGCCGAGGAAAAATTAGGTGCGCTTGGC 861089 36 100.0 30 NNNNNNNNNN .................................... TAAATTTGTTTAGCAGGTAAACCGTGCTTT 861155 36 100.0 30 NNNNNNNNNN .................................... TTCAGCACACTGAGACTTGTTGAGTTCCAT 861221 36 100.0 1 NNNNNNNNNN .............................T.C.TT. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [104,645] Score: 0.18/0.18 # # Final direction: F [1.55,0.18 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1254483 25 92.0 38 TATTGCGTAA -..............A......... TTGAAGATAGAGTTAAATGAACTTTTGATGACACAAAA 1254546 25 96.0 41 TGACACAAAA ...............A......... GTCTACACCTCTTGCGTCTATTATGATATCATATTTGTCAA 1254612 25 96.0 39 TATTTGTCAA ...............A......... AAATACGTTTTCTCCATTGTCATATTGCGCATAAGTTGA 1254676 25 96.0 37 CATAAGTTGA ...............A......... ACCAAGTGAAACTTGGAATATATAACCAAAAAGATAT 1254738 25 96.0 38 AAAAAGATAT ...............A......... GATTCTTCAATAAAGCTGGTAATATACTTTGACAGAAT 1254801 25 96.0 40 TTGACAGAAT ...............A......... AGTAATAGAAACTCATTCAGAGTCTCTTCCAACCCGTACA 1254866 25 96.0 35 AACCCGTACA ...............A......... CGTGGTAGTGGTGGTAGTTGTTGTTGTTGTAGGCG 1254926 25 96.0 39 GTTGTAGGCG ...............A......... TAGTATAGTGTTACAGTTAAACGCTGTACCGAATAATGG 1254990 25 96.0 39 CGAATAATGG ...............A......... TAGTATAGTGTTACAGTTAAACGCTGTACCGAATAATGG 1255054 25 96.0 41 CGAATAATGG ...............A......... AAAATGTTTAATATTGGTGGAGTAGTTGATTTCGATAATAT 1255120 25 96.0 39 TCGATAATAT ...............A......... AAGGGTAATAGAAAGCATGCCCATATCAGCAAGTTCTAA 1255184 25 96.0 39 CAAGTTCTAA ...............A......... GTAAAATCCCCAACGCCACATACGTTATAAGGGAAGATA 1255248 25 96.0 37 AGGGAAGATA ...............A......... CTAGTGTTAAAATATATTTCAAGCCTTACGATGAGAA 1255310 25 96.0 37 ACGATGAGAA ...............A......... CATGCATCAGTTCATCGTAGTTGAACTCAGCATGGAT 1255372 25 96.0 40 CAGCATGGAT ...............A......... CAAATCCATTCGAGGAAGTGTTAGAAGAGGTGTATGGTGA 1255437 25 96.0 38 TGTATGGTGA ...............A......... CAGAGGGAAAAAGTTTGCAGGAGATTTCAAGTATTACA 1255500 25 96.0 40 AAGTATTACA ...............A......... CAATATTAAATATTAGTGATTTGGTAATAACGAAAATAAA 1255565 25 96.0 39 CGAAAATAAA ...............A......... GAGTGAGACCATGATCATTAACACTGATATTACGGTAAG 1255629 25 96.0 37 TTACGGTAAG ...............A......... AACAAAACTTCACCAGTGATGGAACATTTGAATGTAA 1255691 25 96.0 40 TTGAATGTAA ...............A......... AAACCGCAAGCAATAATGTACTTACGATAAGGGTGATACT 1255756 25 96.0 42 GGGTGATACT ...............A......... ATATGATTATGAGCGATAAGAATGATGCAATATTAGATATAT 1255823 25 96.0 38 TTAGATATAT ...............A......... GAATATACAGAGAATAGAGAATAGAGAACAGAGAACGG 1255886 25 96.0 36 CAGAGAACGG ...............A......... CCGTGATCAGATACAGTAACAGTCATGTTTTTATCT 1255947 25 96.0 37 GTTTTTATCT ...............A......... CATGGAAACGGGAGGAGGGTGAGACAATGAAGGTTAC 1256009 25 96.0 38 TGAAGGTTAC ...............A......... CACATCTTTAGAGGCGAACTACAGGGGGTACAGCAACT 1256072 25 96.0 40 TACAGCAACT ...............A......... GTAGTGTGAGTAGTGTAGTAGTAGTGGCCTGAATAAGTAG 1256137 25 96.0 35 GAATAAGTAG ...............A......... AAATTCTGCAAAGGTAACACAATTGACGAGGTAAA 1256197 25 96.0 40 ACGAGGTAAA ...............A......... CGGTTACGGGGACGTTTGGACATTTAGCAGCGCATCCCAA 1256262 25 96.0 40 CGCATCCCAA ...............A......... TCCCTTCCTCTCTTTCCGCTTTTGCTCGCTTCGTTTAACT 1256327 25 96.0 41 TCGTTTAACT ...............A......... GGCATAACCGCTGCTTTCGGCTGCTGCTGCTAATTGGTCTC 1256393 25 96.0 39 AATTGGTCTC ...............A......... CCTTCAGCAAGTTGAAGATCTTAAGCGTTTCTTCATCTT 1256457 25 96.0 38 TCTTCATCTT ...............A......... ACGCTGAACGACGTAAACAAGCTCGCACAGAAGAAAAT 1256520 25 96.0 40 AGAAGAAAAT ...............A......... AAGTCACTGAATTGTTGGACGAACTAACTGAAAAAATTAG 1256585 25 96.0 38 AAAAAATTAG ...............A......... GGCATTAGAATATGGGTAAAAACTTATAGCGACGAAGA 1256648 25 96.0 36 GCGACGAAGA ...............A......... TGAAGTACTTGTTAATGTTTCACCTCTAAAGAAGAT 1256709 25 96.0 37 TAAAGAAGAT ...............A......... TTTACCACCGCTCAGACTTCTTGAGATGTTTAAAACC 1256771 25 96.0 44 GTTTAAAACC ...............A......... GAATTCTATCAAGTATTGCGGAAGTAAATACTTCATATTTATCA 1256840 25 96.0 38 ATATTTATCA ...............A......... TCCACTTGGCATATCTTTGGCTGAAGTTCCTTGGTGTG 1256903 25 96.0 36 CCTTGGTGTG ...............A......... CTTCAAGTTGATGAAGTTATAAAAATGTTTGAAGCT 1256964 25 96.0 36 GTTTGAAGCT ...............A......... CACATTAGCAAGAATCGTGCTAGCTACAGTTGGATT 1257025 25 96.0 39 CAGTTGGATT ...............A......... AACTTGGAAGAGTTTAGTGATAAAATCATGGAAATGTTC 1257089 25 96.0 41 GGAAATGTTC ...............A......... TGTTAATATTGCCGGTTCGGCTAGTGATATAGTGTGGTTCT 1257155 25 96.0 34 GTGTGGTTCT ...............A......... GGTAATGGTCTGTATATTGTCTTTAAGTATTTAT 1257214 25 96.0 39 AAGTATTTAT ...............A......... AGCACTAATTGCGAGATTTGAGGATGCCATCAGAAGTAA 1257278 25 96.0 40 TCAGAAGTAA ...............A......... CAAGCTAAGATTGCGAGTACAAGCGATCACTTACACAAAG 1257343 25 96.0 40 TTACACAAAG ...............A......... ACGCCGTTTCTCTATAGTTATTGAACCATGCAATATCATT 1257408 25 96.0 38 CAATATCATT ...............A......... ATTAGCTAAACCATTTCAAAGGCTAACATCTTCTATGT 1257471 25 100.0 40 TCTTCTATGT ......................... ATAAATCCACAAAGTGGCCGTTCAAAGCAAAGAGTTTATT 1257536 25 100.0 39 AGAGTTTATT ......................... TGATATTTATTTTCTCGTGAAAAGTGGAGGGCCTAGAAC 1257600 25 100.0 36 GGCCTAGAAC ......................... ATTATATCATGGAGACCCAGGTGCTGTGACTATCAA 1257661 25 100.0 43 TGACTATCAA ......................... AATTAGCCAGCGTGCCATCTGGGTAAACGTGTATTTTGGTTAA 1257729 25 100.0 39 TTTTGGTTAA ......................... ATAATATATTTCGTTCCAACTACACCTAATGGATTCGGG 1257793 25 100.0 36 TGGATTCGGG ......................... TAATTGTCTGCCCTTGAGTTCCACTGAGAGAAACGC 1257854 25 100.0 39 AGAGAAACGC ......................... AAAAGACGTACAAATATACATCGCACCGAACGGACACAT 1257918 25 100.0 37 ACGGACACAT ......................... GGGTGCGTGCCCCACAGGTCGCGGGTCTACCCCTTGC 1257980 25 100.0 37 TACCCCTTGC ......................... TTATGTCGTTATCTTCTTCGTTTTTGCTGCGTTGTTT 1258042 25 100.0 34 TGCGTTGTTT ......................... GATAAAATATTAAATTCTCAAATTCCATTTAGAG 1258101 25 100.0 35 CCATTTAGAG ......................... AAAATTTGAAACAATATCGCATCTTGAATAATTAT 1258161 25 100.0 37 GAATAATTAT ......................... ACCCCAGAATCCTTGTAAGTAATTTAGTAGCAATGTA 1258223 25 100.0 40 TAGCAATGTA ......................... AGAACAAGGTAAATAGGAGTGTAGTCATAAGGAGAGCAAT 1258288 25 100.0 38 GGAGAGCAAT ......................... CTCATTTATTCGCATCATCTCCCACCTTATCTAAGCCG 1258351 25 100.0 36 ATCTAAGCCG ......................... CCCAAGTAAGCGATATTTTAATGGGCTTACTTTTTA 1258412 25 100.0 38 TTACTTTTTA ......................... GAAAAATTGGTAGAGGACAATATGAAGAATATATTATT 1258475 25 100.0 39 ATATATTATT ......................... GAAAAAAAGAAGGTGATGAGAGAAGATGAGTGAGAAAGA 1258539 25 100.0 36 GTGAGAAAGA ......................... GATCTATTCGCAGAGTTTGCGTCAACACATAAATAT 1258600 25 100.0 36 ACATAAATAT ......................... ACTTTCATCTTCAATTGGGACGATTAAACTATTTAG 1258661 25 100.0 40 AACTATTTAG ......................... CAAAAATCTCAACGACAACACCAACCACAGCATTAACAAG 1258726 25 100.0 37 CATTAACAAG ......................... CTGACCTTAGTAATGAGTAATAGATTCCCTGCGATGA 1258788 25 100.0 35 CCTGCGATGA ......................... GGCATTTACAAGTGGTCACCAGAAATGGGCGTGTA 1258848 25 100.0 37 TGGGCGTGTA ......................... TGCCCCATGTCTTCGGTTTGCAAATCATAAGGTATCC 1258910 25 100.0 37 TAAGGTATCC ......................... CCATTTAAGATCTACTTCACACCACCTTCGCAGGAGA 1258972 25 100.0 43 TCGCAGGAGA ......................... ATTTATCTGTTTCATCCGTGGCTTTGCCACTCATTTCGTCTTC 1259040 25 100.0 38 TTTCGTCTTC ......................... TACAAAAACTAAAAAATAAAAACTAAAAATTAAAAAAA 1259103 25 100.0 36 ATTAAAAAAA ......................... TGATAGATTGGGAGAAATACTACCTGAAATTGAAAT 1259164 25 100.0 41 AAATTGAAAT ......................... TATGTTGTAGAACTTAAACCTACATACCATTCCGCAATTAT 1259230 25 100.0 39 CCGCAATTAT ......................... CACTAGAATTGAATGTCGACAAACATACGACATGGTTCT 1259294 25 100.0 39 ACATGGTTCT ......................... AATGGAGGCAATGAATGAATTAGAAAGTGAAGAGAGAGA 1259358 25 100.0 36 AAGAGAGAGA ......................... TCCAGAATGGAGGGCATATAATGTTGAGCAGTATGA 1259419 25 100.0 39 AGCAGTATGA ......................... AAATACAAAGCCGATGAACCGCAATCTGCCCCTACAATT 1259483 25 100.0 39 CCCTACAATT ......................... TGAAGAGATTGACGGTATAAAATTTGAAGATATAATTAA 1259547 25 100.0 39 ATATAATTAA ......................... ATGGTATCTTGAGGCAGTGTACGGGTGATGCTAAGTTAT 1259611 25 100.0 37 GCTAAGTTAT ......................... AAGTGCCTCCAGCATTTAGTGCAAGTTGGTTTGATAG 1259673 25 100.0 38 GGTTTGATAG ......................... TTCTGTTAAGCGCTCTTGCAACCTTCATGCCATAGCCC 1259736 25 100.0 38 GCCATAGCCC ......................... CTTACTTGTTGGCTAGGATTTTACCAAATGCAATTGAT 1259799 25 100.0 37 TGCAATTGAT ......................... GGTTCTAGCTTACGTTATCTAATTTCGACGTGTGCGG 1259861 25 100.0 37 ACGTGTGCGG ......................... CATATAGTTCACCAGCACCCAGCGGTGTGAAGGATAT 1259923 25 100.0 37 TGAAGGATAT ......................... ATTTGAAAATGTTTAACATAACTGGAGTAATTCCATT 1259985 25 100.0 38 TAATTCCATT ......................... TTCATCTAGAAGATATGAACAAGCTGTTGATGTGCAAT 1260048 25 100.0 38 GATGTGCAAT ......................... GACATTAGCCCTGGGGGTATCTAAACCATCAGTTGAGT 1260111 25 100.0 37 TCAGTTGAGT ......................... ATATGACAACGTAGACATTTTCATTATGGATTGTGAA 1260173 25 100.0 36 GGATTGTGAA ......................... ATCAAAACGGCACAGAACATCTTAGGGCAATTAGCT 1260234 25 100.0 38 GCAATTAGCT ......................... TAATATGATTTTATTAAATCTAGTAGTAAAGCCATTAA 1260297 25 100.0 43 AAGCCATTAA ......................... AACATCTTAATGCCTTTATACCGCCAGTTACACATTATATCAA 1260365 25 100.0 39 ATTATATCAA ......................... AATTTACGATATTATACCGGTTGAGCCTGCAAAAAATGT 1260429 25 100.0 CAAAAAATGT ......................... TGTTGTGTT ========== ====== ====== ====== ========== ========================= 95 25 38 CTTTCAATTCCTTTTGGGATTAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-4.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [59,1596] Score: 0.18/0.18 # # Final direction: R [0.37,5.59 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1297153 24 100.0 43 TAATCCTACC ........................ TGAGGATATACTTTAATCGGATTGTGTTAGGTGGAGAGATGTT 1297220 24 100.0 41 GAGAGATGTT ........................ CCATCTACCACACCGCGGACACTGGTATAAACATGCACCGG 1297285 24 100.0 38 CATGCACCGG ........................ TCAGTCTTATTGTCGAGGAGTAGTGGTAGGAGTGATAC 1297347 24 100.0 39 GGAGTGATAC ........................ GGAAGAGACAAGACTCTACAGTACAATATGCCCCAGATG 1297410 24 100.0 42 GCCCCAGATG ........................ AACCGGAAGTACGAACTATGTTGCTGAGATTGTGGTCTATGT 1297476 24 100.0 40 TGGTCTATGT ........................ TTTGTGGTACTTGTAGTTGTGATGCTGACGTTCCACTACT 1297540 24 100.0 41 TTCCACTACT ........................ TCAAATCAACAAGTTACAGTAACCAACGGTACTTCAAACCC 1297605 24 100.0 40 CTTCAAACCC ........................ TATGTTGTTGTTTGTTGAGTTGTGGTCTGCTGTGTAGTTG 1297669 24 100.0 38 TGTGTAGTTG ........................ ATCCAGACGAAGTGGGGGCAATCATGCAGCCCCCCTCA 1297731 24 100.0 40 GCCCCCCTCA ........................ AAAGATAATGGATAATAACTTAACATTACAGAATTTAATG 1297795 24 100.0 41 GAATTTAATG ........................ TAAACTCATGTAGCGTTAGTTGGAGCGGATCTGCACAAGTA 1297860 24 100.0 38 TGCACAAGTA ........................ CCAGTGTTTTACTTAACATCAGTACAAGGATCAAAACC 1297922 24 100.0 37 GATCAAAACC ........................ AAGAGTTCGATCGGATTAAAGAGGAGATTGAGCAAAA 1297983 24 100.0 42 TTGAGCAAAA ........................ AGTGACTCAATACCGGTCACAATATCTTCAGGTGCTCCCATT 1298049 24 100.0 39 TGCTCCCATT ........................ CGTCCCCATCGAATACGTAAGAGTCTGGAGGGGAATTTA 1298112 24 100.0 40 GGGGAATTTA ........................ TAAAGGTTACGTTAGAACTAGAAAAGAATGGAAATCTGAA 1298176 24 100.0 37 GAAATCTGAA ........................ TGGAGTTTTCAGATATTTTGTAAAGTACGTTCAGTTT 1298237 24 100.0 39 CGTTCAGTTT ........................ AATAGGCTATGGTGTGTGGATGGACCTGTATCGTAAATA 1298300 24 100.0 39 ATCGTAAATA ........................ CACGCAAAAGGATAAACAATATGGTGCGATTCGAATGGA 1298363 24 100.0 40 TTCGAATGGA ........................ ACAAACAGTGTGTGTTACATTATCCTTCGATTACAACGAA 1298427 24 100.0 40 TTACAACGAA ........................ CTTCTGTTCTGAAATTATAAAGGACATGCTGATAAAATTT 1298491 24 100.0 38 GATAAAATTT ........................ CTAACTGAAGAAGACCCAATTTATATTGCAGGATTTGT 1298553 24 100.0 37 CAGGATTTGT ........................ TGCAGAACCATTAGCTGGTACAGTAACTGTTTGCCAA 1298614 24 100.0 42 TGTTTGCCAA ........................ ACCATAGTCCCTGATTTCGGTATTCTTTACCCTGTAACCCCT 1298680 24 100.0 40 TGTAACCCCT ........................ GCTTATCTCTCTCATGCGCCATTTCTTCTTTCCTTCTTTC 1298744 24 100.0 40 TCCTTCTTTC ........................ TATATCCCAAAAAATCTCAGACATTAGAGAGCATTTTTGT 1298808 24 100.0 41 GCATTTTTGT ........................ AATAGATCCAGAAAATGAATATGTCAAATTAGCTGACATTT 1298873 24 100.0 40 GCTGACATTT ........................ TTTATTTTCTTGCGATATTTCATTACCGAGACTTTTGCCT 1298937 24 100.0 39 ACTTTTGCCT ........................ CAACCACAAGAAGAAACCACTACCCAAGAAATGCAGGGA 1299000 24 100.0 38 AATGCAGGGA ........................ TTTGACTCCTGGGCTTAACGCACCTTCTCTGGCCTCGA 1299062 24 100.0 39 CTGGCCTCGA ........................ TTAGCCCAGATGAAGCAACACAAGAGGCTAGTAAGGTTG 1299125 24 100.0 AGTAAGGTTG ........................ TGAGGGTTTA ========== ====== ====== ====== ========== ======================== 32 24 39 CTTTCAATTCTATAAGAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: R [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [513,302] Score: 0/0.18 # # Final direction: R [0,5.27 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1233466 25 100.0 38 AAACACAACA ......................... GAACTAGCTTATAGTTTAGAAGAAAACAAACAAATAAT 1233529 25 100.0 38 AACAAATAAT ......................... ATTTTCAGCTGAAAATTTGAAATCTGTAGATTTGGATG 1233592 25 100.0 39 GATTTGGATG ......................... TTCCAAAATTGATCTTCTATTGCGTCTTTTATTGCTTTT 1233656 25 100.0 37 TATTGCTTTT ......................... ATTGTAGTCTTTATCAATCCACGTTTCTCTAATCTTG 1233718 25 100.0 38 TCTAATCTTG ......................... AATTTTATACCGTCAATCTCTTCATTGTCGCCATAATC 1233781 25 100.0 37 CGCCATAATC ......................... GTGCTTCGCACATCACTCATCTTCTCTCATCACCTTC 1233843 25 100.0 36 CATCACCTTC ......................... AATGTATAAAGGTAACCAGGAGTTGTCCCACTTTCA 1233904 25 100.0 37 CCCACTTTCA ......................... ATATTTACCTTACTCTTTTGGAGAAAGGTTATACGAC 1233966 25 100.0 37 GTTATACGAC ......................... TTTAGGATTGACGATAAAGAAGATGTTATCGTTGGTG 1234028 25 100.0 40 ATCGTTGGTG ......................... CGAACGTAGTTTGAACCTGGCGGTATGTAGACATTAGCTT 1234093 25 100.0 38 ACATTAGCTT ......................... AGACTTGATGTCGTCCTGTTGCCAATTAGCGAGGGCTT 1234156 25 100.0 42 GCGAGGGCTT ......................... CTAATAAAGACGTTAGGATGTTTGCAGTTGCCTGATGACCAA 1234223 25 100.0 40 TGATGACCAA ......................... CTGGACAGTATTCAATTTTAACTGCAATTAAACCTCTCTT 1234288 25 100.0 41 AACCTCTCTT ......................... CAAAATATATACCGGTCTAAAGGTTTCCTGTATCGCAGACC 1234354 25 100.0 38 ATCGCAGACC ......................... TGCGACTTGCAGTATCGCAGATGCAACCATTTTTGCAT 1234417 25 100.0 39 ATTTTTGCAT ......................... TTAACTCCACTAGGTGAACAAGTCGTCAAATCTCAAATT 1234481 25 100.0 43 ATCTCAAATT ......................... TTCAGAATAGCTTAATGCCTCAAATGGTAGATTTGGAATACCA 1234549 25 100.0 40 TGGAATACCA ......................... AAATCTATATCAAGTTGTAATTGGTGTCGACAATCAGCTA 1234614 25 100.0 39 CAATCAGCTA ......................... TTACAACTTGTTGTCCAAACTCCGTGAGTAAACGTATTT 1234678 25 100.0 38 AAACGTATTT ......................... AAATTTGGGACATTAAAAAAAGCTAAACAACTTTTGAA 1234741 25 100.0 36 AACTTTTGAA ......................... AATTCAAACCCCGGATCAAGAGTTAAACCAAGATGA 1234802 25 100.0 39 ACCAAGATGA ......................... ACAATTATTAACGCTTAATTTGCAAGGTATAATTTCTTC 1234866 25 100.0 36 TAATTTCTTC ......................... TTCAATATATCATCAGGATTCATTTTTACAATTTTA 1234927 25 100.0 40 TACAATTTTA ......................... ACTTCTACATTTATGTTGACTCCCATCTTGCTCATATCTT 1234992 25 100.0 39 CTCATATCTT ......................... ACTGCTATTTTTAGTTTACGATTTAAGACTGGAGTTTTA 1235056 25 100.0 38 TGGAGTTTTA ......................... TTATCATTCTGAGGTTTAGCTTTTTCTATTTTTTCTAT 1235119 25 100.0 41 TTTTTTCTAT ......................... ATAACTAATTGACTTAACTTCTTTTTGTTTTCCTCGATTAG 1235185 25 100.0 38 CCTCGATTAG ......................... CTCGCTAACGTTCAAATCTTTCAATAATTTTTGCACGT 1235248 25 100.0 39 TTTTGCACGT ......................... ATCTTTATTTTCATTTTCATATTCCCACACTAGGATGAT 1235312 25 100.0 38 CTAGGATGAT ......................... ATCAAATTTGCGGAAGAGCAGGAAGACCGGGATATGAC 1235375 25 100.0 34 GGGATATGAC ......................... GGTTTTCTGCCAACGACTGCAATAAAACCAAAAA 1235434 25 100.0 38 AAACCAAAAA ......................... GTATTTTCTAGAAAACCTCTCAGCTTTTTCTTGGACAT 1235497 25 100.0 38 TCTTGGACAT ......................... TCCCCTCCCTCTTCCTGAGTTTCTTCTGGCGATTGTCC 1235560 25 100.0 40 GCGATTGTCC ......................... TTTATATAATCCTCAACTGTAAATCTTGGGATTTTTTCAT 1235625 25 100.0 38 ATTTTTTCAT ......................... ATATTGTGCAGTAGAATAAATTATAATTGCGATTGCAA 1235688 25 100.0 37 GCGATTGCAA ......................... ATACAATAGACACTACATGCCTAGATGAAGAGAATAA 1235750 25 100.0 38 AAGAGAATAA ......................... ACAGAAAAATGAAACCCCGCAACAATATTTCAATTCTT 1235813 25 100.0 40 TTCAATTCTT ......................... CATCTTTTTCCGTCGCTTTATATCACCTATGGACTCTTCA 1235878 25 100.0 38 GGACTCTTCA ......................... ACCATACCCAACTTCTAACAACGTCGTTCTTAACAACG 1235941 25 100.0 39 CTTAACAACG ......................... AGTAAATCAAAAAGCAAATAAGTCAGGGGTGGAGAATTC 1236005 25 100.0 34 TGGAGAATTC ......................... TAACGTTTTTAGTTATGTCGTTATCTTCTTCGTT 1236064 25 100.0 43 CTTCTTCGTT ......................... TTGTAGTTTGAATGCGAAACCATTTGCTAAGATATTGATAATG 1236132 25 100.0 38 ATTGATAATG ......................... CGTTATCACAGTTATATTTCTTCTTTAAAATATCATAT 1236195 25 100.0 38 AATATCATAT ......................... TTATCCAGACATTAAGCATGTTGTCGTAGAGGTAGCTG 1236258 25 100.0 37 GAGGTAGCTG ......................... TACTTTTCCATCTTGAGGTATTGCGTTTAGTTGCACT 1236320 25 100.0 36 TAGTTGCACT ......................... TAATATTTTCCAGATTGTCTAAAATTCATCAAATTA 1236381 25 100.0 39 CATCAAATTA ......................... TCTGTCAGTAGCACAAATAATTTTGTTCTCATAAATAGT 1236445 25 100.0 41 CATAAATAGT ......................... CGCCCATAGGACGGGATTTAGATTTCTTGTAGGATTTGTTT 1236511 25 100.0 41 GGATTTGTTT ......................... GTAAGGGGGCTATCCATCCCCGCCCGTGAGGCTTTCCGCCC 1236577 25 100.0 38 CTTTCCGCCC ......................... TGAATCGTTATGGGCTTAGTTAATTCCGTAGTTAAACC 1236640 25 100.0 39 TAGTTAAACC ......................... AACTTAAAGTTGTTATACGTCATTGGAATAACATTCATT 1236704 25 100.0 40 AACATTCATT ......................... TTTACGATATTCACGTCGACAGATACCCTTACTGCTGATC 1236769 25 100.0 38 ACTGCTGATC ......................... ATAGAATTGCATCAGACAGCTTTCATACCTCCGCATCT 1236832 25 100.0 37 CTCCGCATCT ......................... TGAATAGCAACATCGTGTAACCTCATCCTCAGCCTTC 1236894 25 100.0 35 CTCAGCCTTC ......................... TCTTTCGCTCCTTGCACTAGTTTTTCATTTTGCTC 1236954 25 100.0 40 CATTTTGCTC ......................... ATATCCAACGCTTGAAGTAATATTTGAATGTCAATACTTT 1237019 25 100.0 39 TCAATACTTT ......................... ATGCATTCCACCTCTGTTTCTTCCTCTTTACGCATTTCT 1237083 25 100.0 36 ACGCATTTCT ......................... CTCTATATTCTACTATCCTCCCTCTCTGCTCTGGCG 1237144 25 100.0 39 TGCTCTGGCG ......................... ATCTCTGATTTCTCAGTTCTCTAATTCCGAATACTACAT 1237208 25 100.0 41 AATACTACAT ......................... TAAAACTGCTCAAAAATGCTAGAATTATAATTATGGCTATG 1237274 25 100.0 41 TATGGCTATG ......................... ATTTTGAATGTTACGACTCTCGTCATTTTTCCACCTCTTCT 1237340 25 100.0 36 CACCTCTTCT ......................... GGAGTAATCTTTCCAGTCAAAAGACTTTCAGCCCTC 1237401 25 100.0 36 TTCAGCCCTC ......................... TTTATAAGCTTCAATAGAGCTTTATCTTGAGCAATC 1237462 25 100.0 39 TTGAGCAATC ......................... ATAAATGGTACGTCTTCAGGCGGAAAGCCTTCCATTTGT 1237526 25 100.0 34 TTCCATTTGT ......................... ATATTACCTTGCTGGATAAAGTTAATGATTTCAT 1237585 25 100.0 38 ATGATTTCAT ......................... ATCTTTAATAAATCCTCCTTTATTCTCATGTAATGCAT 1237648 25 100.0 40 TGTAATGCAT ......................... TTATATTACGATAAAAGTGCCAGATATGGTTGTTGGCATT 1237713 25 100.0 40 TGTTGGCATT ......................... CCCACCAGAAAAAAAGAAGGGTGGGGGGCAAGGGCCCCGG 1237778 25 100.0 40 AGGGCCCCGG ......................... GCATATATTATTGGCTGAGGTAAGGTCGGCATATCTGTCG 1237843 25 100.0 39 ATATCTGTCG ......................... CCATCCAAGCCTTGATTTGATATTCCTTTTAATGTCTGC 1237907 25 100.0 40 TAATGTCTGC ......................... TTCATTATCCTCAATTTTTTCTATACCCTTGTTGTTCATT 1237972 25 100.0 39 GTTGTTCATT ......................... CCCCACTGGAATGCACCATTTCTTGCAAGTAATACATTT 1238036 25 100.0 40 TAATACATTT ......................... ATGCAGTTTGGCCTAAAGGAATATATACGTTAATGTCTGC 1238101 25 100.0 38 TAATGTCTGC ......................... CCATTATTCGGCACTGCATTTAATTGAAGCACTATACT 1238164 25 100.0 39 GCACTATACT ......................... AATATTTTGAATATTTGTACACCCATATGAAAAACGCAG 1238228 25 100.0 37 AAAAACGCAG ......................... TATCTCTTATTCGTAAGGGTTAAAACAAAATTATCTT 1238290 25 100.0 40 AAATTATCTT ......................... TATATTGATGAGTCGAAGAATCTGATGAAGAACTTCCTTG 1238355 25 100.0 35 AACTTCCTTG ......................... TTTTTATTTAAGAACACTGATGGAAAGATCTATAG 1238415 25 100.0 37 AGATCTATAG ......................... ACCCATATTGAAGAGTTTGAGCATAAAAATGATTCTA 1238477 25 100.0 39 AATGATTCTA ......................... TTCTCAATTGCCTTTCCCACGATAACCTCAATCCAGTAG 1238541 25 100.0 39 AATCCAGTAG ......................... GAACGAACATGGTAAGCCCTGAGGACCTTGAAAACGATG 1238605 25 100.0 40 GAAAACGATG ......................... CTCAGCAGATTTAAACTAACGATATTAATTGTACACACTG 1238670 25 100.0 39 GTACACACTG ......................... TTAAGTTGTTTTGCTCTATTTAAAACAAAAATAATCCAA 1238734 25 100.0 39 AATAATCCAA ......................... CAAGTGCAATAGCAAACTACTACTAAATATAACATATAT 1238798 25 100.0 38 TAACATATAT ......................... CTATATGGGGTCAGGGTGGAACTAAAATCGTGGCTTTA 1238861 25 100.0 39 CGTGGCTTTA ......................... CTTACTTAAGCCTAATATCTCCGCAACTTCATCAATAGT 1238925 25 100.0 41 CATCAATAGT ......................... GAACTCTCTATTGCTGACGAACTAAGAGAAAATTGTTTCAA 1238991 25 100.0 38 ATTGTTTCAA ......................... TCTAACAATGAATCTGTCATAAAGTGCCCGCAACTCTT 1239054 25 100.0 36 CGCAACTCTT ......................... AGATTATCAATCAAGTGATAGAGATATTGCAATTTT 1239115 25 100.0 39 TTGCAATTTT ......................... TGTTAGATACGGCAAGGCAAAGATTACAAACAAGGATGT 1239179 25 100.0 39 ACAAGGATGT ......................... AAAATGGTGCTTATCGCTATTAGGTAGTCGGCGTTGTTT 1239243 25 100.0 36 GGCGTTGTTT ......................... ACTACTCTTACTTTTTGCATTCCTTTTGGAGTAGGC 1239304 25 100.0 39 TGGAGTAGGC ......................... TATTTACGTGCATAAAGAACATACCTCCAGCGCCTCCTC 1239368 25 100.0 37 GCGCCTCCTC ......................... TCGTAAACTTGAAACTGACCCGTATATCCGAATTTAC 1239430 25 100.0 39 CCGAATTTAC ......................... GTATTATTCTCATAATAGGAACCGCCCTAGTGTATGCTA 1239494 25 100.0 37 GTGTATGCTA ......................... CGTGATTACATGGAACATTACTTTTCCACCGAATATT 1239556 25 100.0 39 ACCGAATATT ......................... TTTATGTTTTCGAGTTCTTCTGGTCTTAACATCACTCTA 1239620 25 100.0 36 CATCACTCTA ......................... GTCAGTTATACGCTACATATGAAAAGATAAATGAAG 1239681 25 100.0 38 ATAAATGAAG ......................... ATCTCTCTTAGTTTTGTCAAAGCTTCTGACCCGCTCCT 1239744 25 100.0 40 ACCCGCTCCT ......................... TCTATCTTTATTGTTACAACTTTTGCATACGACATAATTT 1239809 25 100.0 39 GACATAATTT ......................... TCCTCTATCATCTCCTTTAAGCACTGTGTAATCTCACTT 1239873 25 100.0 37 AATCTCACTT ......................... TAATACTGCAGTAACGGTACAAGTCATTGACAGCGCT 1239935 25 100.0 TGACAGCGCT ......................... ATATGGTATT ========== ====== ====== ====== ========== ========================= 103 25 38 GATTAATCCCAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [572,500] Score: 0/0.18 # # Final direction: F [5,0.37 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1305634 24 100.0 37 TAAACCCTCA ........................ TTTGCCATTGCAGAATTATCGCCCAGAACAAATTTCT 1305695 24 100.0 40 ACAAATTTCT ........................ ATCATATATCTTGTATTCCGCATATTTAAATCTTTCTATC 1305759 24 100.0 39 TCTTTCTATC ........................ GCGGTTGAAGAAAAGTGCAGGATCACGGGGTCAGGACTG 1305822 24 100.0 39 GTCAGGACTG ........................ TAGACTATGCGTTATACTATGTCCGCAATGGCATTAGCG 1305885 24 100.0 39 GGCATTAGCG ........................ TTGTATTTGTCGGTGGGTGAACTAACAAATATACGCCTT 1305948 24 100.0 39 TATACGCCTT ........................ TCAATTTGTGAAACTTGTCCCGGCTCATTGGATTTGTTG 1306011 24 100.0 39 GGATTTGTTG ........................ ATCAAGGGCAAATCGGGAGTCCAGGAGATTCTCGAAGCA 1306074 24 100.0 39 TCTCGAAGCA ........................ CTTGAAATTACAGAAAAAATAACATTCATTTACCCTGTG 1306137 24 100.0 39 TTACCCTGTG ........................ ATTCCAACGGCACTTCTTATTCTTTCACAGTTACGGGCT 1306200 24 100.0 39 GTTACGGGCT ........................ CAGAATTAGCACGGTTAGTCGAGCAGTTAGAAATTTACT 1306263 24 100.0 39 GAAATTTACT ........................ CTTTGAAGTACTCTTCTCTATGATACGACACCAATTCTC 1306326 24 100.0 40 ACCAATTCTC ........................ AAATTCTCGCAGAATTCTATCTACCGGACGATGTAGCATT 1306390 24 100.0 42 ATGTAGCATT ........................ AAACCCGAACTTTTGCTATATATAGCATTTCGAACTTTTACG 1306456 24 100.0 39 AACTTTTACG ........................ CGACACCAGTCGGTATTATCTCTTCTTCCTTCAAACCAA 1306519 24 100.0 41 TTCAAACCAA ........................ GAAAAGTTTGGCAGAAAAAGAGTCTGGCTTTGCCAGAAAGG 1306584 24 100.0 40 GCCAGAAAGG ........................ AAGATTGTGGCTATTGCCGCACCGGCGTAAGCGTATTCTT 1306648 24 100.0 40 GCGTATTCTT ........................ CCAAATGCCCGTGAAACATAAACATAATCTCCAGTAGACC 1306712 24 100.0 40 CCAGTAGACC ........................ GCTAATTCCAATGCTAAGTTATCTAGGGCAACAAACAATT 1306776 24 100.0 38 ACAAACAATT ........................ TCACGTTTGCCGTACTCCACCAAAGATATGTATTGAAA 1306838 24 100.0 37 TGTATTGAAA ........................ GACTCGAAAGCCAAAGAGAACGAGAAATGGGACCGTA 1306899 24 100.0 38 TGGGACCGTA ........................ AGCATAAGACCAAGCGCAATTGCGAGGTAATCAAAAAG 1306961 24 100.0 38 AATCAAAAAG ........................ ACAACTCGTTCCTGGGTATCCCTGTTTTGTCTTCTAAC 1307023 24 100.0 39 GTCTTCTAAC ........................ TTTTGTCTCCAAATCGTTTGTCCAATCAAACTTAATTAA 1307086 24 100.0 38 ACTTAATTAA ........................ CCTTCAAACATAAGTTTGACAAATACGGTAGCCCCGCA 1307148 24 100.0 39 TAGCCCCGCA ........................ TTTTATCCATTTGATCCCTTCCTTATAATACAGACCTAT 1307211 24 100.0 38 ACAGACCTAT ........................ CAGATAGATTCCATAACTCACCTCGCCCAAGAAGACTG 1307273 24 100.0 42 AAGAAGACTG ........................ ATAAAATAATCGTTCAATATTTCAATGAAACTGGTGTTATGG 1307339 24 100.0 39 GGTGTTATGG ........................ AAAAGCCAATCCCAAGATACATCATCGCAGAAATATTCA 1307402 24 100.0 40 GAAATATTCA ........................ TTTTGATAACTAGATGTGGAACCGAAGTTTACTACTAGTT 1307466 24 100.0 37 ACTACTAGTT ........................ ACAGTACCATCAAAATTAGGATAGCCGCCACAAACCA 1307527 24 100.0 39 CCACAAACCA ........................ AAAGAAGCGATCAAAAAGCTGGATAAGGAGTTGAAGCAG 1307590 24 100.0 38 GTTGAAGCAG ........................ GGTTTCTCTCTTGTCGCCTCTGCCAGTGCATCATCTAG 1307652 24 100.0 38 CATCATCTAG ........................ TCTTGTGTGGTGTTAACGATCTCGAATCCTGGGGGTAG 1307714 24 100.0 39 CTGGGGGTAG ........................ ATAAAACATATGTATTGGTGCCTATAATTAATAGCCATC 1307777 24 100.0 39 AATAGCCATC ........................ TCCAGTTTCCTTTGCAACATTATCTATAAACGTGTCCTT 1307840 24 100.0 37 ACGTGTCCTT ........................ CTCACTATGTTTGCTGTCGAGAAGTTGAATAAGCAGT 1307901 24 100.0 38 AATAAGCAGT ........................ TCTCCTTTTCTTCTAAGCTAAGATAAGCCTGTTTAATA 1307963 24 100.0 39 CTGTTTAATA ........................ TTACCTCTACAACTCCCAGCTTCCTCTGTTGAATGCGGA 1308026 24 100.0 40 TGAATGCGGA ........................ TTCAATTTATGTGTTACTTTTAATAATTGTTTCACTGCCT 1308090 24 100.0 40 TTCACTGCCT ........................ TCGGATATGTCAGTCTTGACGAATTCGTATGCGTCTCCTT 1308154 24 100.0 38 GCGTCTCCTT ........................ AAATATAAACCATAAATCGTCAACAATTAGACTAACAT 1308216 24 100.0 40 AGACTAACAT ........................ CATGGTGGGGGGGCGTCAAAAATTCAGAAATATTTTGCAT 1308280 24 100.0 38 TATTTTGCAT ........................ AACTCCTTTGCAATCCTATATCTAGTGTAGCCGTCTAA 1308342 24 100.0 37 AGCCGTCTAA ........................ CTGCTCCATCAAACGGCCCCGTGAGGGATACTATGAA 1308403 24 100.0 40 ATACTATGAA ........................ AATTTGAACATAATTCGGCCTCGTCAGTTTTCCACAGATA 1308467 24 100.0 39 TCCACAGATA ........................ TCCCTAACTTAGGTTGGGGTAAAGAAATAGAACATAGAT 1308530 24 100.0 38 GAACATAGAT ........................ TTTACTGACAACGCCATCATACTTACTAGCCCAACTAA 1308592 24 100.0 40 GCCCAACTAA ........................ GTCCATTCTCCATTTATCTCAACCTTATCACAAATTTGGA 1308656 24 100.0 41 CAAATTTGGA ........................ TCAGTTCTAGAAAGAATTATTAGCATTAGATCTTCTAGACT 1308721 24 100.0 37 CTTCTAGACT ........................ CTCTCTATCCCAGATGGAATTCCAAAGGATCAAGCAG 1308782 24 100.0 39 GATCAAGCAG ........................ ATCTGAATTTCCTCAGCTTCCATTGCATAATTTATTCTA 1308845 24 100.0 40 ATTTATTCTA ........................ TATTTACCTTAATATTATGTATAATAGATAAGAGCTCCCT 1308909 24 100.0 38 AGAGCTCCCT ........................ ACTATGGACCTACTACAGGGCCTATCTGACTTTCTGTC 1308971 24 100.0 38 ACTTTCTGTC ........................ TTATTGTCAGAAAAAGAAATTATACTCCGATTAATAGC 1309033 24 100.0 40 GATTAATAGC ........................ GTCAAAATTGCCCAACCGAACGTTAGCAAAAATGCAGCAC 1309097 24 100.0 41 AATGCAGCAC ........................ TCCCTTTCAGATTTGCAATATGTTAGAGCGAGCTTCGCAAA 1309162 24 100.0 39 GCTTCGCAAA ........................ GCTGAATTGTAAAATTACGTTTATTACTTTCAGTCAACC 1309225 24 100.0 39 TCAGTCAACC ........................ GTTTTATTTATAAACGGCGGGTCTAGATAAAATACAGTT 1309288 24 100.0 40 AAATACAGTT ........................ TCACTCTTTCAGTCATCATTCTCTTTGCTGAGATTGCTCT 1309352 24 100.0 35 AGATTGCTCT ........................ GCGAAAACAATAGCAGGCGAAATAGAAGATAAAAT 1309411 24 100.0 39 AAGATAAAAT ........................ GCAATAGACAATATAAGGAAGAGCTTACCACCTAGAGGC 1309474 24 100.0 39 ACCTAGAGGC ........................ GCTTCTTGTCCCTGAACTCCTTCTTGAAATGGATTTATT 1309537 24 100.0 37 TGGATTTATT ........................ TTTCGTATAAGGACCAGAACGGCAATACCCAAACTGT 1309598 24 100.0 37 CCCAAACTGT ........................ CTACTACATCATCCTCTACCACGCCAAGCCAACAACC 1309659 24 100.0 38 GCCAACAACC ........................ ATCTAGCGTTGTCTCTGCCGTTATATATTTGAAAGTGT 1309721 24 100.0 41 TTGAAAGTGT ........................ ATCGCTGATCCAGAACCACGTGGCGAATACAGGAAGAACTA 1309786 24 100.0 39 GGAAGAACTA ........................ ATCAAAAGTCCGCTATGGTCTAACGGTGTAAATAATTCT 1309849 24 100.0 37 AAATAATTCT ........................ AATTGGATCCCTACGGTTGACGGATCACCGAAAGTGT 1309910 24 100.0 39 CCGAAAGTGT ........................ ATCATATTTTGAATTCTCTTATACAGAAATCTTTGATAT 1309973 24 100.0 41 TCTTTGATAT ........................ ATAGCTATATATGGAAATGTTCCAGACGCGGAATATGTTGC 1310038 24 100.0 39 AATATGTTGC ........................ AAGCCTACACAGGATAGGATACTCAAATTATATGAAAAT 1310101 24 100.0 42 ATATGAAAAT ........................ TTTGCGCATTTACTTTTGTATGAGCTAGGCTATTTACATCAT 1310167 24 100.0 37 TTTACATCAT ........................ CTGAAATATCCTTCAAATTGATTTGCCAATAAATTAA 1310228 24 100.0 37 AATAAATTAA ........................ TGTTCTGTCGTTACTGTCGTAAAGCACGTCCTATTAT 1310289 24 100.0 38 GTCCTATTAT ........................ ACAGTGCAGAAGTCTAATCCAAATTATTCTACTTTAGC 1310351 24 100.0 39 CTACTTTAGC ........................ TCCTTGGAGATGTTGATGTTTTATACGGTATTATGTGAA 1310414 24 100.0 38 ATTATGTGAA ........................ GCACAATTCGCCAACGATTTCGGTTCGCTTTATACCTT 1310476 24 100.0 41 TTTATACCTT ........................ CAAATTTCGGCGAAAATTGTACCGAATTTCGGCATTGCTGG 1310541 24 100.0 40 GCATTGCTGG ........................ AAGATCATGGTATTGATATTCAAAAACATTATTCAGAGTG 1310605 24 100.0 42 ATTCAGAGTG ........................ ATTAGAAAAGTTTAAGATTACGCATGCAAATATGTTTTTGAT 1310671 24 100.0 39 TGTTTTTGAT ........................ TTCTGTTTCGAAGAAAACCCGCCTCAGATTCATTATGGG 1310734 24 100.0 39 TCATTATGGG ........................ AAATCAAACGGAAACTCCCCGGATATTATCATGTCTAAA 1310797 24 100.0 37 CATGTCTAAA ........................ CCTCATCGTAAACATGCAATCTTGCATATTCAGTGTA 1310858 24 100.0 39 ATTCAGTGTA ........................ GCGATATATGTTATAAGAGGAGAAGGGACTTTACCCCCT 1310921 24 100.0 41 TTTACCCCCT ........................ ATATACATCGCCGGTTTTATAGCAACTGCACAGCAACAAAT 1310986 24 100.0 38 AGCAACAAAT ........................ GAAGTTGCAAAAATTGCCAATGTTTTTTTCAAACGCGT 1311048 24 100.0 39 TCAAACGCGT ........................ ATTTATGATGAAAATAGGAAATTTTTCAGAAGAATTATA 1311111 24 100.0 37 AAGAATTATA ........................ AAAAGTTTAAATACCCGAAGCCACAAAGGTAAAAATA 1311172 24 100.0 40 GGTAAAAATA ........................ CGTTCTAGAGCTAAACGATGCATACGCGGTGGTACAACTA 1311236 24 100.0 41 GGTACAACTA ........................ ATTCGGGGAAAACTTATGCATTATAAGAAGAAGAGATATTT 1311301 24 100.0 40 AGAGATATTT ........................ TCAAATAAGGAACAACTCTGGGTAAGCCCACAATACGCAA 1311365 24 100.0 38 CAATACGCAA ........................ CTTAGCGTCTCAACCTGAACCAAACTTCCTAGATCAAC 1311427 24 100.0 38 CTAGATCAAC ........................ TAAACTAGATCCTTATATTTCACGTAAATGTAAAGGGG 1311489 24 100.0 38 TGTAAAGGGG ........................ TAAGGAGTAAGCTAGCACTAGCAATAGCGGTTGCAATA 1311551 24 100.0 39 GGTTGCAATA ........................ GTTCATCAGTTCTACCTTTTGGTCCAAAGGCTGATCCAA 1311614 24 95.8 GCTGATCCAA ..G..................... ATCTTGATGA ========== ====== ====== ====== ========== ======================== 96 24 38 GATAATCTCTTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [393,491] Score: 0/0.18 # # Final direction: F [5.68,0 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 355361 32 100.0 34 ACTGGGCGCT ................................ TTGACGAGATATACACGAAGAATGTACCTGAAGG 355427 32 100.0 35 TACCTGAAGG ................................ CCTTTGACGGAGAGGGGAACAGGAAATTAGAGAAG 355494 32 100.0 34 ATTAGAGAAG ................................ GTTGCGCACCGCTCCTTGCGGCGACGTGTCGGGC 355560 32 100.0 36 CGTGTCGGGC ................................ CCTACCGCGCGCCACGTCGTTAAATCCTCTAGCGTC 355628 32 100.0 33 CTCTAGCGTC ................................ TAGTATGTCGCGCAGCCTTGTCGTTACTCCTTC 355693 32 100.0 36 TTACTCCTTC ................................ CAAGGCGTCGCGTCCGTAACCTCCTCGTACAGACAA 355761 32 100.0 37 GTACAGACAA ................................ AGATTTTAGGATACGGTAGATTTCCTCGAACACACGC 355830 32 100.0 35 GAACACACGC ................................ CCTTATGAATGGATGGATAGGAACGGAAGAATGTC 355897 32 100.0 36 GAAGAATGTC ................................ GTGCGGTAGATGATCCAGACTTTGATCGCCGTAATT 355965 32 100.0 36 CGCCGTAATT ................................ GAAGTATGACAAGTTTGTAGGGCTTGAAAATTCATG 356033 32 100.0 35 AAAATTCATG ................................ TATCTGTTCGACCACTTCTACATGGTCGTGGTATT 356100 32 100.0 34 TCGTGGTATT ................................ CATTCAAACAGAACAAGGGATTTTCGAACCAGAA 356166 32 100.0 34 CGAACCAGAA ................................ GCCATGAATTTAGCCGTAAGAGACTTCAAACTGA 356232 32 100.0 TTCAAACTGA ................................ CCTTATCGTC ========== ====== ====== ====== ========== ================================ 14 32 35 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [235,137] Score: 0/0.18 # # Final direction: F [4.87,0.64 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 378211 32 100.0 35 CCTGGGCGCT ................................ AAGAGAGGAGGTTACGCTTTGACTGGCGATACGTT 378278 32 100.0 35 GCGATACGTT ................................ TATCAAATTGCCAGTAGATGTTGAGATAGTCGACG 378345 32 100.0 34 ATAGTCGACG ................................ TCCGATCGACGGTCTTGTGAATCTTGTAAAAGAA 378411 32 100.0 36 TGTAAAAGAA ................................ CGTCTAATTTTAAAGTGAACTTTTCAAGTAATTCAT 378479 32 96.9 33 AGTAATTCAT ............G................... ACCAGTTGTCATTGGTCTATCTCACCTCCCCTC 378544 32 100.0 36 ACCTCCCCTC ................................ AAGATTACCGAAAATCGTCGTAAACTTGTCGCGTAC 378612 32 100.0 34 TGTCGCGTAC ................................ CTTACTTGGAAAGGGATTGCTATGACATACGAAA 378678 32 100.0 37 ACATACGAAA ................................ AGCAGCTCACCGGCCAAGTGCAAGACACTACAGCCGT 378747 32 100.0 35 CTACAGCCGT ................................ GCTTGCGTCATGTCGCGGAAATAGACGAGGTTTAG 378814 32 100.0 36 CGAGGTTTAG ................................ TCTAAATGATTTTAATTGCACAAAAAAGACCGAGTT 378882 32 100.0 AGACCGAGTT ................................ CTTATGTTTT ========== ====== ====== ====== ========== ================================ 11 32 35 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [277,183] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 366106 32 100.0 35 GATTTTCGCT ................................ ATTGAGGTAGGTATTGATTCGTTGGACATGATCAT 366173 32 100.0 34 ACATGATCAT ................................ GCGACATCATCCGACCCGCCAAAGACAATGTTTA 366239 32 100.0 35 ACAATGTTTA ................................ ATCAACATCTATGTGGCTGGAATTTGGCTGAAATC 366306 32 100.0 33 GGCTGAAATC ................................ CTCTGCTACCATCAAGTTTTTCTTGTACTTCAC 366371 32 100.0 35 TGTACTTCAC ................................ ATTCCTCCTACATTTTTTTACGTGGTATAGTCCAC 366438 32 100.0 35 TATAGTCCAC ................................ AAGGTTGGCTGTCATTTCGTTAACAGAAATTTCCG 366505 32 100.0 34 GAAATTTCCG ................................ TCGAAAGTTTCGAGGAGTCTAACGGAGCGGAAGA 366571 32 100.0 35 GAGCGGAAGA ................................ CGCCCACTTACGAATAACAGCAAGAACGTGCATAA 366638 32 100.0 35 ACGTGCATAA ................................ AAGAACTCCGTCAGTAACAGCACGAGCTAGGTTAA 366705 32 100.0 34 GCTAGGTTAA ................................ AATGCGTTGCACCCATCCGCCAGATACGAGACGG 366771 32 100.0 34 TACGAGACGG ................................ TTCTTTTGTCCATCGTTGGTGTTTTTCCATACAC 366837 32 100.0 34 TTCCATACAC ................................ TTTTGATGAACACCTATTGACATTAGGAACGAAA 366903 32 100.0 35 AGGAACGAAA ................................ GGCCACTCTCGAAATCAATCAACCATGTGCTAGAG 366970 32 100.0 34 TGTGCTAGAG ................................ GCTTTCGACCTGATACGCTTCTTCGAACCACGCC 367036 32 100.0 34 GAACCACGCC ................................ ATTATCGTTAGGGTAGGGGTTACTATGAGATGAC 367102 32 100.0 34 ATGAGATGAC ................................ CTAACTGCAACGTTATATACGCGGGCTGTCTTGA 367168 32 100.0 33 GCTGTCTTGA ................................ TGGTGTGGAGTATGGTCGTACTGTTCATCAGAC 367233 32 100.0 36 TTCATCAGAC ................................ CCTTTGCGTTGATGTGCTCCCTTACACTGTGATTCG 367301 32 100.0 35 CTGTGATTCG ................................ CGATCTCTTGATTAAGGTAATCAAGTTGCCTCTGT 367368 32 100.0 33 TTGCCTCTGT ................................ GTCTAGCGTCTAATTAGACGCTACCACTGTAGT 367433 32 100.0 35 CCACTGTAGT ................................ ACACTGACCGCCTCCTATTTTTCAAAAGGGAAGTT 367500 32 100.0 34 AAGGGAAGTT ................................ AAATCCGAAATCCATTCCCGCTCGAAAAATAGGT 367566 32 100.0 35 AAAAATAGGT ................................ CATTCTTCACGCTGTCTTTTCCATCTGTAGCATGT 367633 32 100.0 34 TGTAGCATGT ................................ ACGAGAAGAACAAGAAACTACGTTGGTTTTTGAC 367699 32 100.0 34 GGTTTTTGAC ................................ TGATCGTTAAACTCCTCTAGCACTTTATCAGGTG 367765 32 100.0 35 TTATCAGGTG ................................ TCGTCCGCCACTTCCGCCTGTAATTTCGGAATCTC 367832 32 100.0 36 TCGGAATCTC ................................ CAAAGTGATCGGATCATTCGTTTAATCCCTCCCCTT 367900 32 100.0 33 CCCTCCCCTT ................................ ATCTCCCTTAAGAATTGTGATAGCTTGCTTTAA 367965 32 100.0 33 CTTGCTTTAA ................................ ACTTTAGAATTACACAAGCGTGCAACAGGAGGA 368030 32 100.0 35 AACAGGAGGA ................................ GCTCCTTCCAGTCCGTAGGCTGATCACGGGGAGTG 368097 32 100.0 33 ACGGGGAGTG ................................ TAATCGTGTGTATAAATTTAAATCTGCTTCTCG 368162 32 100.0 33 CTGCTTCTCG ................................ TGACCACATGCCTACCTTCTCTTGTTGAGCTTG 368227 32 100.0 36 GTTGAGCTTG ................................ TAGGTATGAGGTTTTGTATTCCTCATCCGTCTTCAT 368295 32 96.9 35 CCGTCTTCAT ....................A........... AATTCTTATTCCCGCAATCTCGGCCATACGCAAGC 368362 32 100.0 33 ATACGCAAGC ................................ GGAAATCTCTATTGGTGAGAAAAAGGGGAAAGG 368427 32 96.9 AGGGGAAAGG ...............A................ AAGTCCTCCG ========== ====== ====== ====== ========== ================================ 36 32 34 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [184,424] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_002578 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 846049 29 100.0 37 NNNNNNNNNN ............................. AGTTCGTTCAGGCTGAGGGATAAGACCGAAAAAAATG 846115 29 100.0 38 NNNNNNNNNN ............................. ACGAGTGCCGATGCAATCAAGAACGAAGAGGACTATAA 846182 29 100.0 36 NNNNNNNNNN ............................. TCTCACAAGCTTCTACGACCGAGACTGCATCGCCTT 846247 29 100.0 36 NNNNNNNNNN ............................. TTCTCTGCAGTCATGGTCAGATTCAGTCATAGCAGA 846312 29 100.0 36 NNNNNNNNNN ............................. TTGGAAAGATCCGTAAGGTCTTTCTGCTGCAAATAA 846377 29 100.0 36 NNNNNNNNNN ............................. AGCGACACCTGCTGGGTCGGGTTGTACAAGACAACG 846442 29 100.0 36 NNNNNNNNNN ............................. TTCCTCCTCGCCATCATCTTCGACTACCGTTCGCTC 846507 29 100.0 36 NNNNNNNNNN ............................. GTTTACGGCGATCGAAACTGAAGCAGTCTCACCCTG 846572 29 100.0 36 NNNNNNNNNN ............................. AGAAGAGATATATCCGGAACAACTACGGGGCTACTA 846637 29 100.0 36 NNNNNNNNNN ............................. ATATATATGAACGAAGTGATATATACCGGAAACCGG 846702 29 100.0 35 NNNNNNNNNN ............................. CACGTTGACGGTGAAGTTCTGGACGTCAGTATAAC 846766 29 100.0 37 NNNNNNNNNN ............................. TCGGAAATAAAGCGTATGCTTGATGAGGGATGGGTCT 846832 29 100.0 37 NNNNNNNNNN ............................. AATGGGGATAACGGCAATTTAGAAGTGGGTTCAACGT 846898 29 100.0 37 NNNNNNNNNN ............................. TAGCCACCTTTCCCATCTTTATGGCCAGGAATGAAGA 846964 29 100.0 39 NNNNNNNNNN ............................. AAGTACATCGCATTCTCAACTATGGCGAAACCCATGCCG 847032 29 100.0 36 NNNNNNNNNN ............................. AGTAGAGAAACTCTTGAGAAACTGCGTTCCGCGAAG 847097 29 100.0 39 NNNNNNNNNN ............................. ACGATATCCTCATCGCAGAACCCGACCGATGTGGGCAAG 847165 29 100.0 38 NNNNNNNNNN ............................. ATCTGACCAACTCAAACACCACAGGCACACCCTTCAAC 847232 29 100.0 35 NNNNNNNNNN ............................. GTACTTCCCCGGTGGCGAGCAATACAGCGGAAACA 847296 29 100.0 37 NNNNNNNNNN ............................. AGACGTGGCACCGCTTATCGCCGACCCGCTTCCAGAC 847362 29 100.0 36 NNNNNNNNNN ............................. AAAGTCACGCTGTCACCGACGTCCGTTGGGTTCTGG 847427 29 100.0 38 NNNNNNNNNN ............................. AATCACCAAAGGAATAGAAGAAACCGCCTCCATTACGG 847494 29 100.0 36 NNNNNNNNNN ............................. TAATTGTACGGAGAGGTGCCTCCTGATACCGAAGCA 847559 29 100.0 37 NNNNNNNNNN ............................. GATATATTCGGCTGCAACCTTCCTGAACATATCTTTG 847625 29 100.0 37 NNNNNNNNNN ............................. AAAATATGGGGTACAAGACCGAAAGAAGGATAAGGGA 847691 29 100.0 37 NNNNNNNNNN ............................. AGTTGGTAAAGTTTTTGAAATGGAATACCAGACTAGC 847757 29 100.0 38 NNNNNNNNNN ............................. TTTTTGTAGATGTTCTAGATTTGGAGGACTGGATTTAA 847824 29 100.0 39 NNNNNNNNNN ............................. ATTTTGATCTGGGCGGATGCTCCGCTGTATGATGATGTT 847892 29 100.0 37 NNNNNNNNNN ............................. ATTTATACGGACACGGACAGTTTCTTCGTGGTAAACA 847958 29 100.0 37 NNNNNNNNNN ............................. AATGTGCGGAATGCTGACGCCGGCGCTGATATTCCCC 848024 29 100.0 37 NNNNNNNNNN ............................. GTTAAGCTAAACTTAAAGACCGATGAACTGGAAATTG 848090 29 100.0 35 NNNNNNNNNN ............................. ATGAGTGGCAAATATATCATGAAATCGATGAGTTT 848154 29 100.0 39 NNNNNNNNNN ............................. ATTGGAATCACGGTGTCGATCTTAATAACAGATTTGGCG 848222 29 100.0 38 NNNNNNNNNN ............................. CCACAAGTGAGATCGGCATAGCCCCTGCATAATAGCTA 848289 29 100.0 35 NNNNNNNNNN ............................. CCAGAGCTTCGGCTTCTCAACCTCCGGATACGGGA 848353 29 100.0 37 NNNNNNNNNN ............................. GCGAGAATTCAAAGCCATATATATTATCGGAAAGTCT 848419 29 100.0 39 NNNNNNNNNN ............................. TTTATGGCTGAAATAACGGGGAATGACCCCAAATATCGT 848487 29 100.0 37 NNNNNNNNNN ............................. TACACATTCGGCTCTTCCTTAAGCTCCGCAACGCTGT 848553 29 100.0 37 NNNNNNNNNN ............................. AGTCTTCATTGCTTTACCCCCATAAATCAGATCCTCC 848619 29 100.0 38 NNNNNNNNNN ............................. CTGGAACGTGATCGACTGCGAATAGCCATATTGATCCG 848686 29 100.0 37 NNNNNNNNNN ............................. TTTGTTCAGTTCCTTCTTTGAGATCTCGAAAACTATT 848752 29 100.0 40 NNNNNNNNNN ............................. TTCCGCAAGCACTGGGGGATCCTGAATAACAGAAGAGGCG 848821 29 100.0 35 NNNNNNNNNN ............................. TGCACGCCTGCCCTGAGATGAATCCTCTTCTTCCT 848885 29 100.0 36 NNNNNNNNNN ............................. ACACCTGATCCGACCGAACACCCCTAAAATGAATTA 848950 29 100.0 36 NNNNNNNNNN ............................. GTATGATGCCTGGACAGTCTGCCCCTGGTCAAATGT 849015 29 100.0 34 NNNNNNNNNN ............................. AGGTTCTGGAGTGGCTGGCTTATCGCGACTGAAT 849078 29 100.0 1 NNNNNNNNNN ...........A............A.G.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 47 29 36 GTAAAATAGAACCTTAATAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.20,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [700,215] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_002663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 362647 28 100.0 32 AATTCATTTA ............................ AAAACGAAGCCGAAAGATAAAAATATTAAAGA 362707 28 100.0 32 ATATTAAAGA ............................ ATGAAAAACATTGATGTGCACTGTCAGATTTT 362767 28 100.0 32 GTCAGATTTT ............................ GCCTTATTCTAAAAATTGGCGCATATCAGGTG 362827 28 100.0 32 ATATCAGGTG ............................ GTAAAAAACCTTTGTGCACTTAGTGAAAGCGG 362887 28 100.0 32 GTGAAAGCGG ............................ ATATAAAAACTCTGAAAATACACTGTGCCTTG 362947 28 100.0 32 CTGTGCCTTG ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 363007 28 100.0 32 TGCCGGCACA ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 363067 28 100.0 32 ACCGCATGAA ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 363127 28 100.0 32 AATCTTTCTG ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 363187 28 100.0 32 ACTCGTCGAT ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 363247 28 100.0 32 CTACTACTAA ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 363307 28 100.0 32 CGCACGTTTA ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 363367 28 100.0 32 CCTGCTTGGA ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 363427 28 100.0 32 TATTGCTCCG ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 363487 28 100.0 32 TCTGTCATTT ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 363547 28 100.0 32 CTGATTTATT ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 363607 28 100.0 32 CTTGGTAAAT ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 363667 28 100.0 32 CTACGCCTAC ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 363727 28 100.0 32 CGGAATGGTT ............................ TTAATCCCAAAGTTTTAATGAATCTTTTTTGA 363787 28 100.0 32 TCTTTTTTGA ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 363847 28 100.0 32 ATTGACCGAG ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 363907 28 100.0 32 TCCCCAGTTA ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 363967 28 100.0 32 ACGGTTTAAC ............................ GTTTGAGAAAAAGGTGCTTTGCTCGACTTGTT 364027 28 100.0 32 TCGACTTGTT ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 364087 28 100.0 32 GGAAGCGAAT ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 364147 28 100.0 32 TATCAAAAGA ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 364207 28 100.0 32 TCAACGGCAC ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 364267 28 100.0 32 TCTTTACAAG ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 364327 28 100.0 32 TTCTCACCGA ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 364387 28 100.0 32 TAGACCCAAC ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 364447 28 100.0 32 CCACGGGATT ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 364507 28 100.0 32 TCTTCAGTTG ............................ GCAAGTGGCACTTGTGCGATTGAGCCGTATTT 364567 28 96.4 AGCCGTATTT ........................A... ACTCATAATC ========== ====== ====== ====== ========== ============================ 33 28 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [142,171] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_002689 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 109189 28 96.4 41 TTTCCTATAT -........................... TATTCAGAAAAGAGACGATGTTAGCTGGATCGAAATGAAGG 109258 28 100.0 38 GAAATGAAGG ............................ TCTTACAAATGTGGACACTAGGGGGATAGCTTTATCCA 109324 28 100.0 42 GCTTTATCCA ............................ TCCTTTAATTCAGATCTTTTATAAAGCGGGACTTCGTCAATA 109394 28 100.0 39 TTCGTCAATA ............................ GCTACATCACTGATGTCGATATATTCCGTGCCAAGTCGA 109461 28 100.0 38 GCCAAGTCGA ............................ CGACCGCCGTGGACGGATTTTCGACAACTACGTTCTGG 109527 28 100.0 35 TACGTTCTGG ............................ CTCATCGTTCAAGTGGACGGTGAGAGATATGTCTA 109590 28 100.0 44 GATATGTCTA ............................ GAATAAAAGACTTTGATCAAGACAAGGTTCACTTCTATCGACTT 109662 28 100.0 42 CTATCGACTT ............................ TCTACGTCCTCTATCCCGACGACAACAACGAATATTATGCTT 109732 28 100.0 37 TATTATGCTT ............................ TGGGATTATATCCTGGAGGAAAAAATGGAGACGAAAA 109797 28 100.0 38 GAGACGAAAA ............................ AAGAAGTTTATGATAGCTACGATGCATCACGGGTTTTA 109863 28 100.0 37 ACGGGTTTTA ............................ TCCAAGGATGAGGCAAGATCACGAAGATCGTCTTTTA 109928 28 100.0 37 TCGTCTTTTA ............................ CTAGCGCTGAATACGAGCAAAATATGGAAATTCAAGG 109993 28 100.0 40 AAATTCAAGG ............................ TGATAGGGAAGAGAGACCTCGAATATTGGATCGATAACCT 110061 28 100.0 46 TCGATAACCT ............................ TCAAGGCTTTAAAGCAAAAGGTTTTTAGGTGCTGGAAGATAGAGCA 110135 28 100.0 40 AGATAGAGCA ............................ GATATTTCATGATAGCGATCAGCTAACGTTTGTGAATGTT 110203 28 100.0 39 TGTGAATGTT ............................ AGAAGACGTTCCGGAGGAATACATAAGGGGCATTTTCGA 110270 28 100.0 42 GCATTTTCGA ............................ GGTGTCAGCGTGTCGTTGTCATGCATCTCAATCAGCCTTACG 110340 28 100.0 45 CAGCCTTACG ............................ AAGGTGAGAGAAAATGTGTTTCACACCAGTTGGATTTGTAAGATA 110413 28 100.0 TTGTAAGATA ............................ CCGTATCAAT ========== ====== ====== ====== ========== ============================ 19 28 40 CTTCCATACTAACTAGTACATCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [323,211] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_002689 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 121537 28 96.4 43 GGAGCTATTG ...........G................ TGGACAATCTGCCGAAAGCAGCAAAGACTGTGAGTACAATAAG 121608 28 100.0 40 GTACAATAAG ............................ GAAAAAAATCCTATTCGGCTATTTTCACTCAAATTTATAT 121676 28 100.0 42 AAATTTATAT ............................ GACTCACGCAATGGAGATGCGGATAGTATACTTTTAAACGCT 121746 28 100.0 40 TTTAAACGCT ............................ GCAGAGGCATATCCAAAAAAAGGCAAGGTGTAATTAGACC 121814 28 100.0 42 TAATTAGACC ............................ AAGGTTTTTTATTACTCGCTCTTCAGGAGCGCATGGCAGGGC 121884 28 100.0 42 ATGGCAGGGC ............................ CAGGTACGCACAAAAAAGGAGAGCAGAATATGCAGCGGATGA 121954 28 100.0 44 CAGCGGATGA ............................ GATGTCCAATAGAGTAGAAAAAGGTGTTAGGGAGGCCCTCAGCT 122026 28 100.0 44 GCCCTCAGCT ............................ TAGAAAATACTGTTCATTGATTGCAGACCAATTGAAAGACTCTT 122098 28 100.0 42 AAAGACTCTT ............................ AAGGGAGCAAGAGCTCTGCCTATTAAAGCTGATAAATCACAT 122168 28 100.0 45 TAAATCACAT ............................ CAGGTTCTATGTATCTCCATTGTGATTGGCATGCAAATTCTTATT 122241 28 100.0 42 AATTCTTATT ............................ AACAAGGTGTATGTTCTCAATTCGGCAGCACTGCCGAATGTA 122311 28 100.0 38 GCCGAATGTA ............................ GGATATTACATGGGAAAAGAGAACATACAGAAAATACA 122377 28 100.0 44 AGAAAATACA ............................ ACGAGTATGCTACGAAATTGATTTCAGAAGTATTCGAGGACTAC 122449 28 100.0 42 CGAGGACTAC ............................ TTAGGTATATCATATTAAGGTGAAAAAATGGATAAAAAAGAA 122519 28 100.0 42 TAAAAAAGAA ............................ AAGAGACTGTTAGAAAGCGGATTTATATCGGCTGTGGGGCAT 122589 28 100.0 TGTGGGGCAT ............................ CCGTATCAATA ========== ====== ====== ====== ========== ============================ 16 28 42 CTTCCATACTAACTAGTACATCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1213,1165] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1744007 24 100.0 39 AAAATCCTAA ........................ ATACTGCAAGCGAATTGGCGGAAAATTGGCAGCGACGTG 1744070 24 100.0 42 CAGCGACGTG ........................ TTATCTAATTTTAATAATCAAGGAAATTCATTAACTCAAATA 1744136 24 100.0 39 AACTCAAATA ........................ CCCATTCATCTCTTTCTTTGCAGCTTTGTTCTAACATTA 1744199 24 100.0 41 TCTAACATTA ........................ TGGTAAATAGCTCTGTTAGGCCCAGTTATTCCATATTCTGA 1744264 24 100.0 44 CATATTCTGA ........................ ATTTTCTAATATATCTAATTCACTCTGCGTATCATTATGGATAA 1744332 24 100.0 38 TTATGGATAA ........................ TTAGCCCAACAATTAACTAAAGATCCTGAAGCAGTCAA 1744394 24 100.0 AAGCAGTCAA ........................ AAATTTATCA ========== ====== ====== ====== ========== ======================== 7 24 40 GATAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1320,613] Score: 0.18/0.18 # # Final direction: F [5.45,0 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1809772 24 100.0 40 TCATCTTCTA ........................ AACACATTGCTCATATAACTACACCATTCACTATTGCCTC 1809836 24 100.0 40 CTATTGCCTC ........................ ACAATGTATGACTATGGATATCAATGGAGCGTCGGCTTAA 1809900 24 100.0 40 GTCGGCTTAA ........................ CAAATAATCTAGCATTTTCTTCATAAAGTTCATTACATAC 1809964 24 100.0 41 CATTACATAC ........................ CTTAAAAGTGTTGGAGTTTGTGCAGTTAGTTGAATTTCACT 1810029 24 100.0 40 GAATTTCACT ........................ GTTATTCCTAATTGTTTTCGGAAATTATTTTGAGAATGAA 1810093 24 100.0 41 TGAGAATGAA ........................ GCCGTACTGACTTCTCCCCTGCCAGCGAGGGTTCTCCTCAT 1810158 24 100.0 40 TTCTCCTCAT ........................ TTCCCCACCATTATGTACCACTATTATGCTTCCATTTATT 1810222 24 100.0 40 TCCATTTATT ........................ ATGTTCTTTTTCCAGAACTGTAACTATAATTTTGTTGATA 1810286 24 100.0 41 TTTGTTGATA ........................ TATTTTTGCGTATTTACACGATTTATTTATTTCGCAGAATT 1810351 24 100.0 38 TCGCAGAATT ........................ AGTGATGGTACTACGACCGTGAAAATGAGTTGAAAAAA 1810413 24 100.0 37 GTTGAAAAAA ........................ CATCACGCAGAATAATGGTTCAGGTAACTTTTTAAGG 1810474 24 100.0 41 CTTTTTAAGG ........................ TGATTATATTCAAGGACAATATGTTGAAACGCCGATTTTAT 1810539 24 100.0 46 CCGATTTTAT ........................ AGATGCTATTGGAGGATTTCACCAGGTTGGGTTATAATGTCAAATA 1810609 24 100.0 39 ATGTCAAATA ........................ TCAGAGTTTTTTTATTTTTTCTATTTGAAATTAAGCACG 1810672 24 100.0 43 ATTAAGCACG ........................ TTGGGTGTTTTGTTTAGGTTTGAAAAAGATTATCTTATTTTCT 1810739 24 100.0 41 CTTATTTTCT ........................ CCAACGGCTCTTACGCCCTCCTCGGCATGTACAACGGGACG 1810804 24 100.0 48 CAACGGGACG ........................ AAGATACCACAACACTTGGAGTTAATGCATTATTGAATATGGATACAT 1810876 24 100.0 39 ATGGATACAT ........................ GGAAAGGCTAATGGAGACAAAAAGAAGTCTAAAAAGCAG 1810939 24 100.0 44 TAAAAAGCAG ........................ TTCTTCAGCTTCTTCCCAACGCTATATGTGCTATTAGGTGTAAC 1811007 24 100.0 41 TAGGTGTAAC ........................ CGGCACAGTACTACTATCTGAAAGTGTTGCATCTCCAAATA 1811072 24 100.0 38 TCTCCAAATA ........................ AACACGTCCTTTTTCATTTGTAATATCTGAACCTGGAA 1811134 24 100.0 GAACCTGGAA ........................ CCTAATATCC ========== ====== ====== ====== ========== ======================== 22 24 40 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [139,4425] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1811328 24 100.0 43 GAAGTGCGGG ........................ ATATTTAAAGTTTTTGCTCAACCAGTTAGGTAACAAGTATTCT 1811395 24 100.0 40 CAAGTATTCT ........................ AAAGCGGTTGTTTTCCAGTTCCAGAAACTGGAATTCTTAT 1811459 24 100.0 38 GAATTCTTAT ........................ GGATTTTTAAATGGAGTGAATTGATAAAATGATAAAGC 1811521 24 100.0 40 ATGATAAAGC ........................ TTGGTGGGGCGATGAACGGCAACGATATGTTGGACGTCAT 1811585 24 100.0 42 TGGACGTCAT ........................ CTGGAAAACAAATTGAAGAAAGTAAAAAAATTGAAATTTTAA 1811651 24 100.0 41 GAAATTTTAA ........................ GATAGAGAAAAGTTTATAAAGGAGAGTGAAGATATGTATAT 1811716 24 100.0 39 ATATGTATAT ........................ TCTAACACTTTATGATTTCAAGAACTTTGCAAGAAATAA 1811779 24 100.0 40 CAAGAAATAA ........................ TTAGCATGCGAAACAAATGAAGAATTCAGAAGAGAGTTAG 1811843 24 100.0 42 AGAGAGTTAG ........................ AAAGAATGAGGAAAGAGGCATTGGAAGGCATTGAAGAAGGTA 1811909 24 100.0 41 GAAGAAGGTA ........................ TGGAGATTTAATTAGATATCATCACTTCGTTCCTTTCTCTC 1811974 24 100.0 40 CCTTTCTCTC ........................ CTGTTACGCCGGTGCTGGAGGGTAAGTTAGTTGGAGAGCT 1812038 24 100.0 39 TTGGAGAGCT ........................ TTTCCCAGACTTAGTAAAGGACATTTGGAAGGTTCTAAT 1812101 24 100.0 40 AGGTTCTAAT ........................ ATGAAACAGAAAAAGTTAACATTTTAGACCACCAATTAAA 1812165 24 100.0 40 ACCAATTAAA ........................ AAGACCCCGACTTTTTAAGGTTTACAGATCCCGCAGAAAA 1812229 24 100.0 39 CCGCAGAAAA ........................ ATGAGGTTCGTCGTGTAGGGATTAATCCCGTGTCTAAAG 1812292 24 100.0 40 GTGTCTAAAG ........................ TAATTATCAATGGCAAACCGCATATAATTGGATGAGATTA 1812356 24 100.0 42 GATGAGATTA ........................ TTTACTACACATGTAATAAGTATGTTGATTATGGAATAGAAT 1812422 24 100.0 38 GGAATAGAAT ........................ TTGAACACGTGATATAGAACCAGTTGTTCTAATACGTT 1812484 24 100.0 39 CTAATACGTT ........................ AACAATAGCAATAGCTTTGCTTATAGTCGGTGTAATAAT 1812547 24 100.0 41 GTGTAATAAT ........................ TTGTAAAGACTAGGTAAAACTTTGTTATCATAATAGCAGTA 1812612 24 100.0 43 AATAGCAGTA ........................ AGGAGGGGCTATACGTACGATCACGAATGTAACATTATCGTGA 1812679 24 100.0 38 ATTATCGTGA ........................ AGTATCTGGCTTTTCGACACAAAACTTCCTTTACCAAC 1812741 24 100.0 41 CTTTACCAAC ........................ ACGACGATGCTATGTGTTGCACTGTATTTGATCACGGTTAT 1812806 24 100.0 38 TCACGGTTAT ........................ TACGGTTAAAAGTTGGCAAAAAGCTTAAATTTTTGCAT 1812868 24 100.0 37 ATTTTTGCAT ........................ CTTATGAGCCTCTTTGAGATGTGTCTCTGACTTCTGA 1812929 24 100.0 41 TGACTTCTGA ........................ ATAAATAAACTAGGTTTGTATTTATCACCTCCAACAATTCA 1812994 24 100.0 42 CAACAATTCA ........................ AAACGATAAATTAGCACTATATTATAACTATGATTCTACACA 1813060 24 100.0 46 ATTCTACACA ........................ AACTGTAACTGGTAGCCTTGGTCAGGTGTTACTGACAGTGTCGATG 1813130 24 100.0 40 AGTGTCGATG ........................ CAAAATGATATACATATAGTACCATCACCTAGCGCAAGAC 1813194 24 100.0 43 AGCGCAAGAC ........................ GGATATCCAGCAATTGCAACAGGTGGGTCGGGGATATCATTGC 1813261 24 100.0 40 ATATCATTGC ........................ TTTAACTATGACTTTTCAGAATACAACAATTTCGCCAATT 1813325 24 100.0 44 TTCGCCAATT ........................ ATGTATACAATAGATCATATGTTATATATAGAGAATGTACCAAT 1813393 24 100.0 43 ATGTACCAAT ........................ TCTTGTACAAACTCTCATACACGTTCATTGCAAAACAGTTCAT 1813460 24 100.0 37 AACAGTTCAT ........................ TACACTGTTGCTTTCCTAACGCTCTACATCGCGTTGT 1813521 24 100.0 39 ATCGCGTTGT ........................ TGCAGGAGGGCGAGGAAGAATGATAAAGATGGAGGAAAA 1813584 24 100.0 40 TGGAGGAAAA ........................ TTGTCCCTTCCATGGGCATTTGTCACTTTCACAAAACCTA 1813648 24 100.0 40 ACAAAACCTA ........................ ATAAAAAAAGAATTATAACTTATTCATCATTCTTTTAATA 1813712 24 100.0 42 TCTTTTAATA ........................ TTATAATCCCCGTGACACAGAAAGAATTTTAAATATCATAAT 1813778 24 100.0 39 ATATCATAAT ........................ TAAACTAACAAGTAAAATTATAACTCCTAACGGAATTGC 1813841 24 100.0 42 ACGGAATTGC ........................ TGACGATTATAACACTGAACATGAGTATGCAGTAAGTGAAGT 1813907 24 100.0 44 TAAGTGAAGT ........................ AGAATAATCAGTGATGAACAGTGTGAGAAACTTGTCCAAGTTTT 1813975 24 100.0 40 TCCAAGTTTT ........................ ATGATGTTGAAAATGGACTAAAACTTTTAGATGAAAAACT 1814039 24 100.0 41 ATGAAAAACT ........................ TGAACGGAACATCTATTTTTACTCCTAACATCATTCAATCA 1814104 24 100.0 42 CATTCAATCA ........................ AAATAATGATAAATAAGGATGAGGTGATAGTACAATGAAATT 1814170 24 100.0 45 CAATGAAATT ........................ AGCCCTCCAAAATCGTAAAACCTTGAATATATGAAGTTAAATTTA 1814239 24 100.0 39 GTTAAATTTA ........................ GTGCTGTAGGCTGTAGGACTGTCGAGGTAGCGTTTGAAG 1814302 24 100.0 40 GCGTTTGAAG ........................ AGAGTTAATAAACATTTCGAATCCCCACGCTAACGAAAAG 1814366 24 100.0 39 TAACGAAAAG ........................ ACAAATAACGAAACGAATAAATATAATAAATTATGAATA 1814429 24 100.0 43 ATTATGAATA ........................ TTGGTGAACCGGTGATAATATTCGTTACGGCGTCCAATACTGT 1814496 24 100.0 39 CCAATACTGT ........................ CCTTACCCTTCAGGAAGCTGCAGAAGATGGTGGAGTACA 1814559 24 100.0 44 GTGGAGTACA ........................ CATCCGTTACGCTGAGCATACTAAGATCTGTCCTATTTGCCATA 1814627 24 100.0 39 ATTTGCCATA ........................ TATGGGGGTCAGTGACACTTATTCCACCGTTCAGTATTT 1814690 24 100.0 41 TTCAGTATTT ........................ TGGAATTTTGAATTTTTTGCACCGCTCCAATTATTATTTGG 1814755 24 100.0 41 TATTATTTGG ........................ TTGTCTGTCGGTGAAGCAGTAGTATTTCTAAGAGGCCGTCC 1814820 24 100.0 37 GAGGCCGTCC ........................ TCTACTTCTGTCTTCTTAGCCATTCAGCTCACCTTTG 1814881 24 100.0 44 CTCACCTTTG ........................ GTAAGAATAATTTTACAAAATCTTAGTAATTATATAGTTTATAT 1814949 24 100.0 40 TAGTTTATAT ........................ CCTCGCTTTAACCGAGGTGTCTCGGTGACGCTTGCTCCGT 1815013 24 100.0 40 CTTGCTCCGT ........................ AGATTGGTGTATAGTAACAGAAAAGCAGACAACGAAAGGA 1815077 24 100.0 43 AACGAAAGGA ........................ ATGTTAGTTATCGGCGTTATAATGGGTATCGGAATCGGTGTAG 1815144 24 100.0 43 ATCGGTGTAG ........................ CTATTTTTGTCAATAATTTTTTTATTTTTGCATTTTTCGAAAT 1815211 24 100.0 41 TTTTCGAAAT ........................ GTAATCTTATTTCTGCGGTAAATTGAGATTATAGATGGTAC 1815276 24 100.0 39 TAGATGGTAC ........................ ATCATTTATGCACATTTCAACTCCATTTCCAATATGAAT 1815339 24 100.0 39 CAATATGAAT ........................ CCACGTTTTTTGTCTTAACTTTAATTGATTTATTAGAAT 1815402 24 100.0 41 TTATTAGAAT ........................ AAGGTCAATCCATTCTGGGGGCGTTAAACCCGCATCCCTGT 1815467 24 100.0 43 GCATCCCTGT ........................ GGCAGTGTTAGAATACTAACGGGCGAAGAAGAATGGGTTTATT 1815534 24 100.0 TGGGTTTATT ........................ AAGAAGAGAA ========== ====== ====== ====== ========== ======================== 66 24 40 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1695,25] Score: 0.18/0.18 # # Final direction: R [0.45,4.5 Confidence: HIGH] >NC_002755 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3116727 36 100.0 37 GTGAGGTTGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3116800 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3116876 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3116953 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3117025 36 100.0 37 GCGCAATCCA .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3117098 36 100.0 37 TTGTTGCCGG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3117171 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3117243 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3117308 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3117385 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3117457 36 100.0 34 GGTCGACGAA .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3117527 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3117599 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3117676 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3117750 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 15 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_002755 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3113903 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3113977 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3114053 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3114129 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3114202 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3114274 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3114345 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3114419 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3114495 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3114566 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3114639 36 100.0 38 NNNNNNNNNN .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3114713 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3114784 36 100.0 37 NNNNNNNNNN .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3114857 36 100.0 37 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3114930 36 100.0 36 NNNNNNNNNN .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3115002 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3115074 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3115148 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3115222 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3115293 36 100.0 1 NNNNNNNNNN .....................GAACC.C.CCGGTGA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [150,28] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_002932 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1052108 32 100.0 34 NNNNNNNNNN ................................ GATGATAGATGATTAAAAGTCTAATAGATAGACG 1052174 32 100.0 37 NNNNNNNNNN ................................ ATTATGTGGTTATGCGAGGCGTTAAACATCGCCCGCC 1052243 32 100.0 34 NNNNNNNNNN ................................ AGGCTCGCTTTGTGAGGGCGGTACTCCAAGAGCT 1052309 32 100.0 33 NNNNNNNNNN ................................ ATGCGTTATGAGGACTTCCGATCAGCCTATTAC 1052374 32 100.0 37 NNNNNNNNNN ................................ ATTATGTGGTTATGCGAGGCGTTAAACATCGCCCGCC 1052443 32 100.0 40 NNNNNNNNNN ................................ TTATGCTTTTGTGTCTTTTGTCCGGCTTTTGCAATGTTTC 1052515 32 100.0 36 NNNNNNNNNN ................................ GCTTTAAGGTCAGCAACTTCACGTTGATGTGCGGTC 1052583 32 100.0 35 NNNNNNNNNN ................................ TTGAATGGGTCGAGCACTCACGTCCTACGACGGGC 1052650 32 100.0 33 NNNNNNNNNN ................................ AATGGTTCACAGCACGGGAGCGCCGCACAGGTT 1052715 32 100.0 36 NNNNNNNNNN ................................ CTGCTTTGCCGTACATCAGTGGCGAAGATGCTCGGA 1052783 32 100.0 33 NNNNNNNNNN ................................ TACTTTGCCAGGCGATCATCGAGAGTATAAAGC 1052848 32 100.0 34 NNNNNNNNNN ................................ GCGGTCCCTTCCAGTATCTCAGCAAGAGTTATGA 1052914 32 100.0 34 NNNNNNNNNN ....................A........... CGAGGAGTATATGAAGTCGCAGCAAGGTCTCTAC 1052980 32 100.0 34 NNNNNNNNNN ................................ TGATGTCTCCCGATCGCCTCGTCCCGGTATGGTC 1053046 32 100.0 33 NNNNNNNNNN ................................ CTTGACGCCCAGCTCTTGCCCCTTGCTCGCGTT 1053111 32 100.0 33 NNNNNNNNNN ................................ ATACCAAGTGGCCAAAGCTGCTCAAGAGATTCA 1053176 32 100.0 37 NNNNNNNNNN ................................ CACCTCGAGCATCTTGCTCAAACAATTTCTGGATTTG 1053245 32 100.0 33 NNNNNNNNNN ................................ GTCGGTATCCTTGAGCCGCTCGATGTCGTCGAT 1053310 32 100.0 34 NNNNNNNNNN ................................ GCCGATCCGGATATAAAGAGCGGGTGGAGAACGA 1053376 32 100.0 34 NNNNNNNNNN ................................ CGGTAGGTCGTAGCAGCTGATCGTCGCCGCCCCA 1053442 32 100.0 34 NNNNNNNNNN ................................ CCGCGGCGCCCTCATGAGTGACGCTGATCTGTTC 1053508 32 100.0 34 NNNNNNNNNN ................................ TAGAGCTGGGCGCTTGTCCCGATTGGGTCATCCG 1053574 32 100.0 33 NNNNNNNNNN ................................ TTGCCAATGTTAGCACAACAATATCAATCACAA 1053639 32 100.0 32 NNNNNNNNNN ................................ ACATATCTAGTGCCACCTCGAGCATCTTGTTC 1053703 32 100.0 37 NNNNNNNNNN ................................ GCCTGTACTGCTATGACGATAGTATCAGACAAACAAA 1053772 32 100.0 33 NNNNNNNNNN ................................ CTAAACGCAATTGCGATCCGCGTAACTTTACAA 1053837 32 100.0 34 NNNNNNNNNN ................................ AGGTTCGATTTGTTAAGGCGGTACTCCAAGAGCT 1053903 32 100.0 35 NNNNNNNNNN ................................ CCGACTACGTTTATCAACGGCGTTCCAAGCGCCGA 1053970 32 100.0 35 NNNNNNNNNN ................................ AAGAGGGCGATCAGCAAGAGACGCCAGCGGCCGAA 1054037 32 100.0 34 NNNNNNNNNN ................................ AGAAATAAATCTCATCCATTAACTTAACTTATCA 1054103 32 100.0 33 NNNNNNNNNN ................................ TCAGGCCGGAGAGCGCGCGGACACGCTGGTCGA 1054168 32 100.0 34 NNNNNNNNNN ................................ ACCGCTCCATGTGTCCCTTGAGCGACGGAGACCA 1054234 32 100.0 36 NNNNNNNNNN ................................ CATTGACAGGGTCGCCCCAACGGTACTTCGGGCCTC 1054302 32 100.0 35 NNNNNNNNNN ................................ ACCTGTACGACGCAACACCGGCATCATAACGCGAT 1054369 32 100.0 35 NNNNNNNNNN ................................ ATGCTCCGCTCCCGTGCTGTGAACCATTTCATGGA 1054436 32 100.0 35 NNNNNNNNNN ................................ GTCATTATTGACAAGCCCTGCGTCGATCATGGCCA 1054503 32 100.0 36 NNNNNNNNNN ................................ CCTTTCGATCGCCCGCAGGGTTGTCTCTGAGATCCC 1054571 32 100.0 34 NNNNNNNNNN ................................ AAGCGACTGAAGACCAAATTGTTGAAGCCATCAA 1054637 32 100.0 33 NNNNNNNNNN ................................ GATTGATCAAATTGACCTATTTCGTACAATACA 1054702 32 100.0 35 NNNNNNNNNN ................................ GGCGCTCCGGATGGGTCATGAGCTACGACCCGAGC 1054769 32 100.0 35 NNNNNNNNNN ................................ TATGCGCAACCGCTGGATATTTGGCACTTGGCGCA 1054836 32 100.0 34 NNNNNNNNNN ................................ ACTTCGCGGAAGGCAAGCGATACCCGGTGCGGCT 1054902 32 100.0 34 NNNNNNNNNN ................................ TCTCGATCGCCCGCAGGGTTGTCTCTGAGATACC 1054968 32 100.0 33 NNNNNNNNNN ................................ CCTAATATGTCTTTACATTTACCAGATTTTCAA 1055033 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 45 32 34 GTTTCAATCCACGCGCCCGCGCGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [126,180] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_002932 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1877373 28 100.0 33 CGCATGGGAC ............................ TTTCTACCCATTACCAACACAAGGGGCGCGCGT 1877434 28 100.0 36 GGGCGCGCGT ............................ CAACAACAACCAAAAAACTCAAAACTTACGGAGTCC 1877498 28 100.0 33 TACGGAGTCC ............................ CATGCGACGCCTTTTGTCTAACTTGACAACGAT 1877559 28 100.0 34 TGACAACGAT ............................ TCACGCGATTGCGGCGTTCGCGCTGATCAAAAAG 1877621 28 100.0 34 GATCAAAAAG ............................ CCATGTTATCATTTCAGAAACAAGAAAAGAATGA 1877683 28 100.0 34 AAAAGAATGA ............................ TGGGATAACCGTATAGGAAGCGTAGCAGTGCAGG 1877745 28 100.0 33 GCAGTGCAGG ............................ CCTTGATTGCCCGCGCCGTTATGGGCGGCGGGC 1877806 28 100.0 33 GGCGGCGGGC ............................ CAAGGAACAATTTGAAATTCTCACGCAAGGAAC 1877867 28 100.0 35 CGCAAGGAAC ............................ CACTACAATATCATAAAGCAAGGCGTCTCCGCATG 1877930 28 100.0 33 TCTCCGCATG ............................ CTCTTGGGGGATCGAGGGCCTTCAATTTGCCGG 1877991 28 100.0 35 AATTTGCCGG ............................ TCACGCGCTGGCGGCAAAGGCGTTAATTGAACGCT 1878054 28 100.0 33 ATTGAACGCT ............................ TAAAAAAGTGCTTGCTTTTTGGAAAAAATGAAT 1878115 28 100.0 33 AAAAATGAAT ............................ TGGTGTATAGCATCTAATCCAGTAATCTTTTTA 1878176 28 100.0 33 AATCTTTTTA ............................ TGTCAGGACATATCACTTAGAGCTTATGAGCGA 1878237 28 100.0 33 TTATGAGCGA ............................ CAAGTATATGGCTCACTTCCCGGATAATTACGG 1878298 28 100.0 34 ATAATTACGG ............................ CAAAAACCGGAGACCAACCATGAAACAGGAACAG 1878360 28 100.0 35 ACAGGAACAG ............................ CGCCTCGGGTCGCCGGGGCGTTGTCTTTGACCCGT 1878423 28 100.0 TTTGACCCGT ............................ CTTGTCCAGC ========== ====== ====== ====== ========== ============================ 18 28 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [72,99] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_002935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2306022 29 100.0 32 NNNNNNNNNN ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 2306083 29 100.0 32 NNNNNNNNNN ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 2306144 29 100.0 32 NNNNNNNNNN ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 2306205 29 100.0 32 NNNNNNNNNN ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 2306266 29 100.0 33 NNNNNNNNNN ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 2306328 29 100.0 33 NNNNNNNNNN ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 2306390 29 100.0 32 NNNNNNNNNN ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 2306451 29 100.0 32 NNNNNNNNNN ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 2306512 29 100.0 32 NNNNNNNNNN ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 2306573 29 100.0 32 NNNNNNNNNN ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 2306634 29 100.0 32 NNNNNNNNNN ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 2306695 29 100.0 32 NNNNNNNNNN ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 2306756 29 100.0 32 NNNNNNNNNN ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 2306817 29 100.0 32 NNNNNNNNNN ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 2306878 29 100.0 32 NNNNNNNNNN ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 2306939 29 100.0 32 NNNNNNNNNN ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 2307000 29 100.0 32 NNNNNNNNNN ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 2307061 29 100.0 32 NNNNNNNNNN ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 2307122 29 100.0 32 NNNNNNNNNN ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 2307183 29 100.0 32 NNNNNNNNNN ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 2307244 29 100.0 32 NNNNNNNNNN ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 2307305 29 100.0 32 NNNNNNNNNN ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 2307366 29 100.0 32 NNNNNNNNNN ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 2307427 29 100.0 32 NNNNNNNNNN ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 2307488 29 100.0 32 NNNNNNNNNN ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 2307549 29 100.0 32 NNNNNNNNNN ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 2307610 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 27 29 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,256] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_002935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 39206 35 100.0 29 CGGCGTCCAC ................................... TGCGCGAGCGGCTTCCACGTACCATAGAA 39270 35 100.0 29 TACCATAGAA ................................... TATCGTCTAACAGTTGCTAAATTTTTTGC 39334 35 100.0 29 AATTTTTTGC ................................... TTCGGCGCGAGCCTCGCTAGGTGCTGCTG 39398 35 100.0 GGTGCTGCTG ................................... CCCGCGCCAGCGGAGATGAGCCGTAGGA ========== ====== ====== ====== ========== =================================== 4 35 29 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [130,1391] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_002939 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 74806 37 100.0 36 GAAAAGAGCC ..................................... AACTTTGCCGGGGATTCTCTTTTCTGTGAATGGGCT 74879 37 100.0 35 TGAATGGGCT ..................................... TTTTATGCCAAATGTACGGACATTGCAAGTTAATC 74951 37 100.0 35 CAAGTTAATC ..................................... TTGATGTCATCGCCCACCTGAAGGTACAGGTCGCC 75023 37 100.0 36 ACAGGTCGCC ..................................... GCAAGGGCTGTGCCGTCCGTAACGTTGTCCGGTTTG 75096 37 100.0 38 GTCCGGTTTG ..................................... GCGATGGTCGGACGCTTGAGGACCAGGTTGTACGCCGC 75171 37 100.0 37 TGTACGCCGC ..................................... GTCTTCAAGCCCGCTGGTGATTTTGAGGGTAAATTCG 75245 37 100.0 38 GGTAAATTCG ..................................... TCGTAGCGCGTTTCCCGCGTCAGGCAGTACCCCATGAA 75320 37 100.0 36 ACCCCATGAA ..................................... CCGGTAACGGCCTTATTAACATCATCTGATGATTCT 75393 37 100.0 36 TGATGATTCT ..................................... CCAAATAGACTGAAGGCTGTTTATAAGTTCTGGATT 75466 37 100.0 37 GTTCTGGATT ..................................... GCGTGCTCAGGGAGGGACAAAGGGTCGAACATGTCAC 75540 37 100.0 35 AACATGTCAC ..................................... TAAACTTTTTGGGGGGCCAGCGGGGGGCTTGCCCC 75612 37 100.0 35 GGCTTGCCCC ..................................... AACCGCTCCAGGCCACCCTCCTGCCGGCACTGGGC 75684 37 100.0 36 GGCACTGGGC ..................................... TTGATCATTGAGAGGGTGATCCGCTCTCCGGAGAGT 75757 37 100.0 37 TCCGGAGAGT ..................................... TTGTATAACGGCTGCCGGATCAACAAGGGGAGTTTCG 75831 37 100.0 36 GGGAGTTTCG ..................................... TTGTCAAGCTCCCCCTTCCTGTCTGGTGGACAATAC 75904 37 100.0 37 TGGACAATAC ..................................... TGAATCTCAGTGAGTGTTTCAGCTCCCAACATCACAA 75978 37 100.0 36 AACATCACAA ..................................... ACGCTTGATCCAGTCCACCAACTGTTCTTCCACCCT 76051 37 100.0 37 CTTCCACCCT ..................................... TCCTTGCGGGCGCGCTCGGCGTTTCGTTCCTGTTCGG 76125 37 100.0 35 TCCTGTTCGG ..................................... CGTCTGACCAGTTCATATTGTTGACGGCCCAGTCC 76197 37 100.0 36 GGCCCAGTCC ..................................... TTGGATATTAATGGCAAAGGCTACAAACGCATCGCC 76270 37 100.0 37 ACGCATCGCC ..................................... GACGTCGACACCTGGCGCGCCGCCGGCATGGTGGCCG 76344 37 100.0 37 ATGGTGGCCG ..................................... CTATTGTAACCGGCGCTTGCGTAATCCAGGTGTATTG 76418 37 100.0 36 AGGTGTATTG ..................................... GTCTCGATAGCCGCCGTGTTTTCGCCGACGGTGGTC 76491 37 100.0 35 GACGGTGGTC ..................................... CTCTCTCAGGGCGCACAGGTAATCCTCCAGCGGCG 76563 37 100.0 37 TCCAGCGGCG ..................................... GTGGTGATGCTGGAAGTCGTGGGCACCTCCCCAGTCG 76637 37 100.0 37 TCCCCAGTCG ..................................... CACGTATACCGTCGCGCCCTTGTGCACGAAGTCGACC 76711 37 100.0 36 GAAGTCGACC ..................................... TTCATGACTTTGCGGTACTTCTCATAGGCTTCGGAT 76784 37 100.0 37 GGCTTCGGAT ..................................... TGCAACCCCTTCTCCTTCTCCTTCTCCTTATATAAAA 76858 37 100.0 36 TTATATAAAA ..................................... ACGGCAGACCGGCCCGAGACACTGACCCAGGAAGAA 76931 37 100.0 36 CCAGGAAGAA ..................................... TACCTCTACCGCGACAAGGAATATCACGGACATCTC 77004 37 100.0 35 CGGACATCTC ..................................... ATGTGTCCGCTGGTGAGCGTGACGCGATCCTCGCT 77076 37 100.0 36 GATCCTCGCT ..................................... GGCATAGTTGTAGGTGACTTGCACCAGAGCGACCGG 77149 37 100.0 37 GAGCGACCGG ..................................... TCGTACATCTGCACCACGGCGGCGTGCCGTTTTTCCT 77223 37 100.0 35 CGTTTTTCCT ..................................... ATCGCTGTGCATGCTGTCGAATTCGGCGTGGGTGA 77295 37 100.0 37 GCGTGGGTGA ..................................... GGGTAACGTCTCGGGCAGGTAGTTGTTTTCCAAGGGT 77369 37 100.0 35 TTCCAAGGGT ..................................... TTGCTCAACGAAGAAATATTCCGCCTCTGCCCGTT 77441 37 100.0 38 TCTGCCCGTT ..................................... GACGAGATGCGCCCATCCAGCAAGCGAGCCCCTCCCCC 77516 37 100.0 CCCCTCCCCC ..................................... TCGGCCGTCGATTTGCCCGAACTGGCATACCCCTCGAA ========== ====== ====== ====== ========== ===================================== 38 37 36 GTATTCCGGGGCCATGATGCCCCGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-15.50,-16.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [207,2] Score: 0.18/0.18 # # Final direction: R [0.45,0.74 Confidence: LOW] >NC_002939 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1521847 29 100.0 32 NNNNNNNNNN ............................. ATCGCCCTGGAGACCACCGCCCGTGACGGCGA 1521908 29 100.0 32 NNNNNNNNNN ............................. AGCCGGCGTTCAAACGCGACACTGGCGGCCGA 1521969 29 100.0 32 NNNNNNNNNN ............................. GCCTGTTCCCCCTCGTCGGCCAGGTTGTTGTG 1522030 29 100.0 32 NNNNNNNNNN ............................. TCGTCGAAGACATGGACCAGGCCGACGCCGTA 1522091 29 100.0 32 NNNNNNNNNN ............................. TGCTCTCCGGGCTCTCCGGTCTGGTGAATTTC 1522152 29 100.0 32 NNNNNNNNNN ............................. GTTTCCGGTCGCAGCATGGAGCCGATGATCGT 1522213 29 100.0 32 NNNNNNNNNN ............................. CTCACCCAATGACCTGGTACTGCCCGGTATAT 1522274 29 100.0 32 NNNNNNNNNN ............................. CTTCTGTCGCTCACGCTCAATGCGGTCCGTAC 1522335 29 100.0 32 NNNNNNNNNN ............................. CAACGGATCGACTACTGGGACTGCACTGTTTA 1522396 29 100.0 32 NNNNNNNNNN ............................. ATTACGCGCATGCCAGCTCCAACCATGCTCGA 1522457 29 100.0 33 NNNNNNNNNN ............................. GGGGTAAAGGGGGGCATGATGCCCCCCTCTGCT 1522519 29 100.0 32 NNNNNNNNNN ............................. GCCGTTACCGGTAACCCCGGTCGTTATGATGG 1522580 29 100.0 32 NNNNNNNNNN ............................. ACAGTAGCAACGATAGCGAGAGAAAGGAAAAT 1522641 29 100.0 32 NNNNNNNNNN ............................. GTGCTCTCGGTTCCGGTAAGACATACTATGCT 1522702 29 100.0 32 NNNNNNNNNN ............................. ATATTTTTGGTAATCAGCAGGGTTTTTAGTCG 1522763 29 100.0 32 NNNNNNNNNN ............................. ACGATACAGCAGACGATACAGGAGCAAGGACA 1522824 29 100.0 32 NNNNNNNNNN ............................. TACCAGGAATGTGTTTAGAACGCTCGAGAGCC 1522885 29 100.0 32 NNNNNNNNNN ............................. TTCAATGGGTTGATTTGATGGATTCCAAGCTT 1522946 29 100.0 32 NNNNNNNNNN ............................. TGCCGGGGGGGTGGCGCCGGCGGTGGTGTCTT 1523007 29 100.0 32 NNNNNNNNNN ............................. GTACCGGGCCGCTCCTCCATGACCAACGCCAA 1523068 29 100.0 32 NNNNNNNNNN ............................. GTCGGCAGCCGGCCCTGGGTGCTCTCCTCGGG 1523129 29 100.0 32 NNNNNNNNNN ............................. TAGACCTCTGCAGCGCCTTTGCCACTGCAGCA 1523190 29 100.0 32 NNNNNNNNNN ............................. TCGGCAGCGGTAAATCCGTCATGCGCCGCAAA 1523251 29 100.0 32 NNNNNNNNNN ............................. CCCCTTGTCGCTGCCGGACTTTTTCTTCAGGT 1523312 29 100.0 32 NNNNNNNNNN ............................. TCAGCCGGGCCGCCGACCCCAGCGCCCGGGAG 1523373 29 100.0 32 NNNNNNNNNN ............................. GCCCGGTCTGGCGGGCCGACCAGATCATCACC 1523434 29 100.0 32 NNNNNNNNNN ............................. AACCAGTCGGTGGCGTCGGTCTGGAAGGGGTT 1523495 29 100.0 32 NNNNNNNNNN ............................. TTCAACCCATATATGGGACTATGCGGCTAGGC 1523556 29 100.0 32 NNNNNNNNNN ............................. GAGGCGTAAGCATGGCAACAGAGACTCAGAAC 1523617 29 100.0 32 NNNNNNNNNN ............................. AGCTAGGCGACATCTCGTCTTTTGTCCGTGCC 1523678 29 100.0 32 NNNNNNNNNN ............................. CACGACTCACCGCCTGGCTGGCGGCCGACGAG 1523739 29 100.0 32 NNNNNNNNNN ............................. TATTCCCAGGTTAGCGGTTGCAGCCACAGCAT 1523800 29 100.0 32 NNNNNNNNNN ............................. CCATCAGCAACGCCGCAGACCGCGCCGGCATC 1523861 29 100.0 32 NNNNNNNNNN ............................. GCTGGTTCATGGGGCGTTCACCTCCGCAGGCC 1523922 29 100.0 32 NNNNNNNNNN ............................. AGGGCCGGGCCATGATCCAGGCCGACCTCGAC 1523983 29 100.0 32 NNNNNNNNNN ............................. GTTTTTCTGGAGGAGGTGCCCCCCTGGCATGC 1524044 29 100.0 32 NNNNNNNNNN ............................. GCTGTGTCTGCTGTGATAATCTTGAGAGTGAT 1524105 29 100.0 32 NNNNNNNNNN ............................. GGCGAGGTTAGGCGGAGGCTGGAGAGCATCGC 1524166 29 100.0 32 NNNNNNNNNN ............................. ACGAGCCACTGAAACTCAGCCCCTGGCCCAGA 1524227 29 100.0 32 NNNNNNNNNN ............................. GACCACGGCTACCTCAAGAGCGTGTTGAAATC 1524288 29 100.0 32 NNNNNNNNNN ............................. CTGCCCGCCTGGGGCTTGATCTCCAGCAGGCC 1524349 29 100.0 32 NNNNNNNNNN ............................. CTGCGGGAACAGCAGGCCGAACGCCTGGGCCA 1524410 29 100.0 32 NNNNNNNNNN ............................. ACCCCGGCAACCTGACGTGCGGCGTTTGGGTC 1524471 29 100.0 32 NNNNNNNNNN ............................. CTCGCCAGGGGGCAATCTTTGCTCCTGCCACG 1524532 29 100.0 32 NNNNNNNNNN ............................. ATGCAGATCCTCGTCGCCTACGATACCGCCGT 1524593 29 100.0 32 NNNNNNNNNN ............................. CTCGCGGTCGGAGCTGCCGGTGAGGCGGCGCC 1524654 29 100.0 32 NNNNNNNNNN ............................. TGCTCTGGCCCGACACGCCTCCTGAGCAGCGC 1524715 29 100.0 32 NNNNNNNNNN ............................. CCCTCCCCATCCCTGGTCGTAACCCGAAGATT 1524776 29 100.0 32 NNNNNNNNNN ............................. CCCAGCGGATCGTCAACGACGAGCGGCACCTC 1524837 29 100.0 32 NNNNNNNNNN ............................. GTGCGCGAGGGTATTTGCGGTCAAGGGCATCG 1524898 29 100.0 32 NNNNNNNNNN ............................. ACCACCGCCCCCATCACCTGGACCGGCGTCAA 1524959 29 100.0 32 NNNNNNNNNN ............................. AAATTAACCACACCGGACCGCTGTTTCTCAAC 1525020 29 100.0 32 NNNNNNNNNN ............................. ATCCTGTCGAGGCCCTGCAACTCCTGGGAGAG 1525081 29 100.0 32 NNNNNNNNNN ............................. GCGAATGCCGTTCGCCCGACCTACGGTCGGAC 1525142 29 100.0 32 NNNNNNNNNN ............................. GGGTCTGGTCCGGTGGATGTCTATCTGTGCAG 1525203 29 100.0 32 NNNNNNNNNN ............................. ATGCATTCGGGGAAAGCCCTTATCGTGACATT 1525264 29 100.0 32 NNNNNNNNNN ............................. CAGATGAAAGGAACCTGAAAATGGCACTCAGA 1525325 29 100.0 32 NNNNNNNNNN ............................. CGACACAGGATCGCGTCGCCAGTCTTGATCTC 1525386 29 100.0 32 NNNNNNNNNN ............................. GGGTATAACCCGCCTATAGACGCCGACTACGC 1525447 29 100.0 32 NNNNNNNNNN ............................. ATACACAAGAATGGCCGGATCGAGATGCCGAA 1525508 29 100.0 32 NNNNNNNNNN ............................. TCAATATTTTAGTTTTGCTGGTCAGGCGTTTC 1525569 29 100.0 32 NNNNNNNNNN ............................. CTCGTCAGCGCCATGCTCAAAGAGGCGGCCGG 1525630 29 100.0 32 NNNNNNNNNN ............................. CTGGATATCACCGAGGGGGGCGCCGTTGTCCT 1525691 29 100.0 32 NNNNNNNNNN ............................. TGTCCACCCCGTAATTTCCGAGACTTTTTTAG 1525752 29 100.0 32 NNNNNNNNNN ............................. AATGCACCGTCCGCAATTACCGCTTTAGCTAT 1525813 29 100.0 32 NNNNNNNNNN ............................. CCTTTGTAATAGTCGAAGCCGAACTCGACGCC 1525874 29 100.0 32 NNNNNNNNNN ............................. GGTGATGTACGCCCCACCATCAATTGAGACCT 1525935 29 100.0 32 NNNNNNNNNN ............................A GCCGAGCACGACGAAGAGAAACTCCGCAAGTG 1525996 29 100.0 32 NNNNNNNNNN ............................. ATATGGGGAACTAAGTGGAACGCCTGTGAGTC 1526057 29 100.0 32 NNNNNNNNNN ............................. CGGTATCAAATGAGGCCTTCCCCTCGTCAGGG 1526118 29 100.0 32 NNNNNNNNNN ............................. TATAATGAAGAAGGGAGAATTGAACAATGGGT 1526179 29 100.0 32 NNNNNNNNNN ............................. AATCGCTTTGAGGTTCGTTGCTGGAACGAGGA 1526240 29 100.0 32 NNNNNNNNNN ............................. ATGAGGGCTGAAAACCCGGCAATCGAACCCTG 1526301 29 100.0 32 NNNNNNNNNN ............................. GTCATTTCTGTTCTCCAGCCGCTATCGCCAGC 1526362 29 100.0 32 NNNNNNNNNN ............................. GCGGCCTGGAGGCGGTCGACTCCTTCACGGCC 1526423 29 100.0 32 NNNNNNNNNN ............................. ATGTGCGGCCCCTTCTCCTTCGGTGACTACTC 1526484 29 100.0 32 NNNNNNNNNN ............................. TTTATCGTTGCGAACCGACAGAGGGTGAAATA 1526545 29 100.0 32 NNNNNNNNNN ............................. GTGAGTATGCAGCAATGAACATTTCTCTCCTT 1526606 29 100.0 32 NNNNNNNNNN ............................C AGATGTGTGCTGAATTCAAGAACCCGCAAGGC 1526667 29 100.0 32 NNNNNNNNNN ............................. GACAAAATCAGCGACATTACCACCGTTGGCGA 1526728 29 100.0 32 NNNNNNNNNN ............................. GTATTCCCTATGGCCGGAAACACCATCATCGT 1526789 29 100.0 32 NNNNNNNNNN ............................. ATCGAGGATCTGCTCGTCGGTGATGGTGCCAT 1526850 29 100.0 32 NNNNNNNNNN ............................. TAACCATGCCCGGATCACTATCGAGTACACCG 1526911 29 100.0 32 NNNNNNNNNN ............................. CGCACGAATGTCCTCGGCCCTCCATGCCGTAC 1526972 29 100.0 32 NNNNNNNNNN ............................. CCGTTACGCCGACCGCCGAGTTTCGGCAAAAT 1527033 29 100.0 32 NNNNNNNNNN ............................. CACGGAAAAGAGCCCGACTCCGTGAACCAGGC 1527094 29 100.0 32 NNNNNNNNNN ............................. CAGGATGGCGTCGAAAAATACTATCGCCGGTC 1527155 29 100.0 32 NNNNNNNNNN ............................. GAGTACGACTGGGTACTCATCGACGAGGCGCA 1527216 29 100.0 32 NNNNNNNNNN ............................. AGCGGGTAGATGTCCTCCCGGTACTGGGATGC 1527277 29 100.0 33 NNNNNNNNNN ............................. GTGCCAAACAAGCCGTCAGTGCTTTTGGCGGGC 1527339 29 100.0 32 NNNNNNNNNN ............................. CTTGAGCGACCGCTTCAGAATCGGGATGAGCC 1527400 29 100.0 32 NNNNNNNNNN ............................. GCGTTGCCATCTGGGTCCTGATGCTCGACCGC 1527461 29 100.0 32 NNNNNNNNNN ............................. GTTTGCCGATACGTGCCGTCCCTGCGCCGACA 1527522 29 100.0 32 NNNNNNNNNN ............................. TACCCTCACTAAAGGGCAACAGCACGATTCAA 1527583 29 100.0 32 NNNNNNNNNN ............................. CGCTGGCTCACCCTGGCGCAGGGTCTCCGACA 1527644 29 100.0 32 NNNNNNNNNN ............................. ATGAGGGATGCTTCCGAAGGTAAGATTGAGGC 1527705 29 100.0 32 NNNNNNNNNN ............................. AGGTTGGGTGTGGCTTCCTACGATTTTGAGCA 1527766 29 100.0 32 NNNNNNNNNN ............................. ACTGTAACGTCTGCCATTGGCTCAGGAGGTTT 1527827 29 100.0 32 NNNNNNNNNN ............................. ATACCAAAACAAAAGACATTATGTCCGACATC 1527888 29 100.0 32 NNNNNNNNNN ............................. ATCAACTACACCTACACCGTGGCCGCCAGCGG 1527949 29 100.0 32 NNNNNNNNNN ............................. CTATCCGGTTCATTTTTTCATTGGTGAGATAG 1528010 29 100.0 32 NNNNNNNNNN ............................. GCTGCGAGGCTGCACAGACGAATCCTGGAAGG 1528071 29 100.0 32 NNNNNNNNNN ............................. GGGATCACCTGATGGACGCAACCCGCTACCTA 1528132 29 100.0 32 NNNNNNNNNN ............................. AGTGGCCCCACCGGCAGTATAGCCGGTTCCGC 1528193 29 100.0 32 NNNNNNNNNN ............................. GTGCTGGGACTCTTCGCGCAGGGCGCCCATAT 1528254 29 100.0 32 NNNNNNNNNN ............................. GAGCTTCGGCGGGTTTTGCGGATGCTGGTTTA 1528315 29 100.0 32 NNNNNNNNNN ............................. AAATTGCGACTATCCTCACCAAGTTGGCAAAG 1528376 29 100.0 32 NNNNNNNNNN ............................. ACGCTACTTTTTATCGCTGGGATCATTGCAAT 1528437 29 100.0 32 NNNNNNNNNN ............................. GTTGTCCAGAGGGTCAGCCATTTGGAGCTTGG 1528498 29 100.0 32 NNNNNNNNNN ............................. GAGTTGCAGCCCCTCACCGGACGGAGTCGCTA 1528559 29 100.0 32 NNNNNNNNNN ............................. GCTTCTTTGAAGCTGGGGACAATATCCCTGCT 1528620 29 100.0 32 NNNNNNNNNN ............................. ACCTCAAACAGAGCATCAACGCGGCCCACTCC 1528681 29 100.0 32 NNNNNNNNNN ............................. CCGGAGCCTGGGAGATCGGCAAGAACTACCTG 1528742 29 100.0 32 NNNNNNNNNN ............................. GGTAAACCCGTCCCCACAGTCACGATGGTGGT 1528803 29 100.0 32 NNNNNNNNNN ............................. GCGACAACTATGCTGGGGTCGTGTACTTGCCA 1528864 29 100.0 32 NNNNNNNNNN ............................. GTGTACTTACTTCCGTGTTGGTTCTCTCTGCG 1528925 29 100.0 32 NNNNNNNNNN ............................. CCGGTCTTGAGGGTCCAGCTTTCCTGCTCGAA 1528986 29 100.0 32 NNNNNNNNNN ............................. CAGTCGATACTCACCGATATCTCGTCAATAAC 1529047 29 100.0 32 NNNNNNNNNN ............................. GGAAACAGCACGATTCAACTGGTGTGTAACAC 1529108 29 100.0 32 NNNNNNNNNN ............................. AAGAAGGCCGGCTGCCATACATTCCGCCATAG 1529169 29 100.0 32 NNNNNNNNNN ............................. CTACGCAATGGCTCACTAATGTGGTCCATACG 1529230 29 100.0 32 NNNNNNNNNN ............................. ATGTTCAAAGCGTTGCGCCAGTGGTTAACGTC 1529291 29 100.0 32 NNNNNNNNNN ............................. CGGATGCCGAAGGGGGCAATTTGCTTACGGGT 1529352 29 100.0 32 NNNNNNNNNN ............................. CCAAAACCGCCAAGGACAACTACGAGGCGCAG 1529413 29 100.0 32 NNNNNNNNNN ............................. GTGGATATCAAGCGCCTGACCCTGGAAACTGC 1529474 29 100.0 32 NNNNNNNNNN ............................. CTGCGCAAACAGTTTGAGGGTCAGGTGGTGGA 1529535 29 100.0 32 NNNNNNNNNN ............................. TTGACGGAAGCGTTTCGGTATCGGAAGGCATT 1529596 29 100.0 32 NNNNNNNNNN ............................. GTGATTCCAGTGGCCCCAGCGGCAGTGCTGCC 1529657 29 100.0 32 NNNNNNNNNN ............CAT.............. GGTTTCTACGGCCAGTACCGGGGCGAAAAGAA 1529718 29 100.0 32 NNNNNNNNNN ............CAT.............. TTGTCACGCTTCGCGGCGCAGAACCGGAAACA 1529779 29 100.0 32 NNNNNNNNNN ............CAT.............. GAGCCAGAACCATGAATATATTAGACGGGGCA 1529840 29 100.0 32 NNNNNNNNNN ............CAT.............. GTGGGCTCCATGCTGCGACCGCGCACTAGAAC 1529901 29 100.0 32 NNNNNNNNNN ............CAT.............. CCTTTACATCGGTTTTCATGGCCTTGATAAAG 1529962 29 100.0 32 NNNNNNNNNN ............CAT.............. CACGTGCACTCGGTTGAGGATGTCGCCATAAG 1530023 29 100.0 32 NNNNNNNNNN ............CAT.............. ACGCCTATGACCACGCGGCGAAGATCATCGGT 1530084 29 100.0 33 NNNNNNNNNN ............CAT.............. CGGTAGACCTACTGGTGGACTCCGGGCTCTCCC 1530146 29 100.0 32 NNNNNNNNNN ............CAT.............. CCGCTCCAGTTCGGCAACGTGGACCAGATCCG 1530207 29 100.0 32 NNNNNNNNNN ............CAT.............. GTAGAATGGCTTTTCGGCGACGCGCTCCGAGA 1530268 29 100.0 32 NNNNNNNNNN ............CAT.............. TGGACGAGCGCAGTCAGGAGAAGTTGCTCGTC 1530329 29 100.0 32 NNNNNNNNNN ............CAT.............. CTCCAACGAATTGCCGCCATCGAGCGCCATCA 1530390 29 100.0 32 NNNNNNNNNN ............CAT.............. ACAATTCCGCCGGTGCGGTAGATGTGTTGGTA 1530451 29 100.0 32 NNNNNNNNNN ............CAT.............. TCCAGCATTGCCTTGCCGTGTCCGGATTTGCG 1530512 29 100.0 1 NNNNNNNNNN ...........C................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 143 29 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,2] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_002945 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3075735 36 100.0 35 AGTCGTCGTA .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3075806 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3075879 36 100.0 38 CGCTCAAAAT .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3075953 36 100.0 43 GCGTTTCCGT .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3076032 36 97.2 41 TGGATTTCGA ....A............................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3076109 36 100.0 38 CCGGATGCAG .................................... TTGACTCAGACCCCAGCGCCAACTTGCCCACCATCCGC 3076183 36 100.0 38 CACCATCCGC .................................... AGGCGCTTCGACGGTGTGGGCGAGGTGACTTCGCAAAG 3076257 36 100.0 37 CTTCGCAAAG .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3076330 36 100.0 38 TCGGTGTCGA .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3076404 36 100.0 35 GAGTGATAAA .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3076475 36 100.0 37 GGCTCCCCGA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3076548 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3076621 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3076693 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3076765 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3076839 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3076913 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 17 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,99] Score: 0/0.18 # # Final direction: R [0.27,1.15 Confidence: MEDIUM] >NC_002945 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3078342 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3078418 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3078493 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3078566 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3078642 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3078719 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3078791 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3078863 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3078936 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3078997 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3079074 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3079146 36 100.0 39 NNNNNNNNNN .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3079221 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079295 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079369 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3079440 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3079515 36 100.0 38 NNNNNNNNNN .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3079589 36 100.0 39 NNNNNNNNNN .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3079664 36 100.0 36 NNNNNNNNNN .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3079736 36 100.0 35 NNNNNNNNNN .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3079807 36 100.0 37 NNNNNNNNNN .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3079880 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3079952 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3080029 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3080103 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 25 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_002976 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2517620 36 100.0 34 NNNNNNNNNN CACTCT.C...................C........ AGAGAATCAAGAAAAAATGTTCACGACCGTACTA 2517690 36 100.0 35 NNNNNNNNNN .................................... ATCGATGTAACGTATGCAAATGACAATTATTACTA 2517761 36 100.0 35 NNNNNNNNNN .................................... CTTTGTACTGATGATTTATATACTTCGGCATACGT 2517832 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 34 GTTCTCGTCCCCTTTTCTTCGGGGTGGGTATCGATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,14] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [77,660] Score: 0.18/0.18 # # Final direction: R [0.27,1.83 Confidence: HIGH] >NC_002945 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3078418 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3078493 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3078566 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3078642 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3078719 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3078791 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3078863 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3078936 36 88.9 29 TTGTTGCCGG ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3079001 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3079078 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3079150 36 100.0 39 GGTCGACGAA .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3079225 36 100.0 38 CTAACGTCGT .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079299 36 100.0 38 CTCTCCTCAG .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079373 36 100.0 35 CTCTCCTCAG .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3079444 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3079519 36 100.0 38 CTGAGGTGTT .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3079593 36 100.0 39 CCGTGTTCAA .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3079668 36 100.0 36 CGTGGGATGT .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3079740 36 100.0 35 TCGTCGAAAT .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3079811 36 100.0 37 CGGCGCACAT .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3079884 36 100.0 36 CGCGCCGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3079956 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3080033 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3080107 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 24 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2068360 37 100.0 34 GGTAATCAAT ..................................... AACGTATTACTAAAGCAGAAAAACAAGCATTTGT 2068431 37 97.3 34 AAGCATTTGT ................A.................... AAAATTAATTGAACTTATAAAATGTTCTTAATCT 2068502 37 100.0 36 TTCTTAATCT ..................................... AATTAGACTCTCCAATTGGATACCAAACTTATCAAA 2068575 37 100.0 34 ACTTATCAAA ..................................... TGCAGGGAGTTGGTTCAGCAAAAACCCCGCTGTC 2068646 37 100.0 38 CCCCGCTGTC ..................................... ATTGAGGAAGAAGGAGTAGAAAAGCCCTATACTCACAA 2068721 37 100.0 37 ATACTCACAA ..................................... TCAAAAATTGTAAAACTTATTAAGTCATGGCGAAACA 2068795 37 100.0 36 TGGCGAAACA ..................................... TCCGATAGAATGGGTACTTTACCTCATGGTCAGTGA 2068868 37 100.0 TGGTCAGTGA ..................................... TACTTGAGCGA ========== ====== ====== ====== ========== ===================================== 8 37 35 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,402] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2102527 30 96.7 36 AATGGATACA -............................. CTTCGATTGGCCCGTAAGGGAATTCGCAGCCAAAGC 2102593 30 100.0 35 CAGCCAAAGC .............................. GATCCGATTCGTCTGCGTCGTCGAGCATAAAGGCG 2102658 30 100.0 35 CATAAAGGCG .............................. AAAAACGACAGCGTGAAGTCGCCGGAGAGGCTGAT 2102723 30 100.0 35 AGAGGCTGAT .............................. AATAAAGCAGATTGGGAAAATCCTATATGTACTTT 2102788 30 100.0 37 TATGTACTTT .............................. TAGGTTAGTAAAATAGAGGTGTTCGCCGTAATATACT 2102855 30 100.0 37 GTAATATACT .............................. CTGCAAACTCGTACCTATCCACTGCAGGCTTGGCTTC 2102922 30 100.0 37 GCTTGGCTTC .............................. AGCTATAACCCTCGATGAGTACTACGAGGGAAATGGC 2102989 30 100.0 36 GGGAAATGGC .............................. GAAGTAGTTCTCGCTCGCTACCGAGAACGCTTCTTC 2103055 30 100.0 34 ACGCTTCTTC .............................. TTTTCAGTCGGTAGCGAAAACTACTTTTTATTTC 2103119 30 100.0 35 TTTTTATTTC .............................. AACGCATTTTATGTGCGCCAAGATAATTGGGGCAT 2103184 30 100.0 37 ATTGGGGCAT .............................. TTACGGCAAAAGGGTTTAGATACCTAATGGAAAAATC 2103251 30 100.0 35 TGGAAAAATC .............................. CATTTTTACAATGGATGCCGAAACCGACAGTCTAA 2103316 30 100.0 36 GACAGTCTAA .............................. AAGAAAGAAGAAAGAATAAGTAGAAATAAAGATGAT 2103382 30 100.0 37 TAAAGATGAT .............................. TAATGTTACACAATGGTATACTGATGATGGTAAACTT 2103449 30 100.0 37 TGGTAAACTT .............................. TTACGAATATCTAACGATGATACTATAGTGCAGTTTT 2103516 30 100.0 37 GTGCAGTTTT .............................. TAAATCAATCAGACAGTATCAAATGAAGTGCGGATAC 2103583 30 100.0 35 GTGCGGATAC .............................. CTATAAAAGAAATTCCAAGAGAGCATGATTCTGAG 2103648 30 100.0 35 TGATTCTGAG .............................. TTAGCAGACGAAGACGATTTTTTCAATGTAGTAAA 2103713 30 100.0 36 ATGTAGTAAA .............................. ACAAGATGGTAAAATGTTTGCTAATCTTAAAACTTT 2103779 30 100.0 36 TTAAAACTTT .............................. GATTCTCTATATGTTCAGTTCAATACAATGCTGAAA 2103845 30 100.0 36 AATGCTGAAA .............................. AGCGTATTTCGGTCTATCTCGTAGCGTTCGAAAAGC 2103911 30 100.0 35 TTCGAAAAGC .............................. ATGATAGAGGAGATAGGACTCGCGCTCACCGATAC 2103976 30 100.0 35 TCACCGATAC .............................. CTCCCGGGTTGGGCAGCACGGCTTTGAGGAATTGG 2104041 30 100.0 GAGGAATTGG .............................. CCGTTACAAA ========== ====== ====== ====== ========== ============================== 24 30 35 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1516,247] Score: 0.18/0.18 # # Final direction: F [4.68,0.41 Confidence: HIGH] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1243692 36 100.0 30 CGGAATAATA .................................... TCCTGCTCCTGAGGATGTGGAAGAAAAGGT 1243758 36 100.0 30 AAGAAAAGGT .................................... GCAATCACAAAAACTTATAACGATGCGTTT 1243824 36 100.0 30 CGATGCGTTT .................................... GACAACGCTACCGTTCAGGCTTGGGACAAC 1243890 36 100.0 30 TTGGGACAAC .................................... GCAATCACAAAAACTTATAACGATGCGTTT 1243956 36 100.0 30 CGATGCGTTT .................................... GACAACGCTACCGTTCAGGCTTGGGACAAC 1244022 36 100.0 30 TTGGGACAAC .................................... ATTACTAAAGAAATTACTAAAGATGTTGTA 1244088 36 100.0 30 AGATGTTGTA .................................... ATTTGTATCAGATTTGGCTCAAAAATGGGA 1244154 36 100.0 AAAAATGGGA .................................... CGACCCTTTAT ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [222,9] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_002976 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2517690 37 97.3 34 GACCGTACTA ....................................A TCGATGTAACGTATGCAAATGACAATTATTACTA 2517761 37 100.0 34 ATTATTACTA ..................................... TTTGTACTGATGATTTATATACTTCGGCATACGT 2517832 37 100.0 CGGCATACGT ..................................... GATACTTTAA ========== ====== ====== ====== ========== ===================================== 3 37 34 GTTCTCGTCCCCTTTTCTTCGGGGTGGGTATCGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,14] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [147,659] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 376221 36 100.0 30 CTTACCTCCA .................................... TATAAAGGTTTGTTCAAGGAATGTGCTACC 376287 36 100.0 30 ATGTGCTACC .................................... GATGCGGACAACGTCCCTGTACTCCGTCTT 376353 36 100.0 30 ACTCCGTCTT .................................... AGTCGATTAGCTCGTCCGCCGACACGTCTT 376419 36 100.0 GACACGTCTT .................................... ATGATTCTTG ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [475,818] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_002951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1182189 19 100.0 37 NNNNNNNNNN ................... GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG 1182245 19 100.0 37 NNNNNNNNNN ..GT...........C... AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT 1182301 19 100.0 37 NNNNNNNNNN ..................T GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT 1182357 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 37 GGCGGGGCCCCAACATAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [157,216] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_002951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2325056 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2325112 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2325171 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2325227 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [61,143] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_002951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 964023 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 964079 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 964137 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 964193 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 964276 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_002967 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 367153 36 100.0 30 NNNNNNNNNN .................................... TATAGGAGGTTTCAAAATGGAAAAATCGAA 367219 36 100.0 30 NNNNNNNNNN .................................... TATCAAGTTGAGCCTTCTTTAAAGCTCCGC 367285 36 100.0 30 NNNNNNNNNN .................................... TATAGGAGTTCCAGACCCAGCACCATCACC 367351 36 100.0 30 NNNNNNNNNN .................................... AAAATCGAATGTATCGCAAGATTCAAACCA 367417 36 100.0 30 NNNNNNNNNN .................................... TACAAAATCGAAGCAGAAGAAAGGAACTTC 367483 36 100.0 30 NNNNNNNNNN .................................... GGTTCCAATCTTTTTGGAATGATTAACAAT 367549 36 100.0 30 NNNNNNNNNN .................................... GATTCTGTATTTCAACGCGATGTTGCTAAT 367615 36 100.0 30 NNNNNNNNNN .................................... CTAACAAAAGGTGGAATTTTACCGAACAAT 367681 36 100.0 29 NNNNNNNNNN .................................... AATTAGTTGTCATTGAAGGTGAAGCCGGA 367746 36 100.0 30 NNNNNNNNNN .................................... GCGGAAAAACTATATCGTAATCTTCATAGA 367812 36 100.0 30 NNNNNNNNNN .................................... GCTGGAACGCCTATAGCGACGCAAGCTCCT 367878 36 100.0 30 NNNNNNNNNN .................................... CGCTGGAACGCCTATAGCGACGCAAGCTCC 367944 36 100.0 30 NNNNNNNNNN .................................... GGTTCCAATCTTTTTGGAATGATTAACAAT 368010 36 100.0 30 NNNNNNNNNN .................................... CATCTAGAATCCTATAAGGCACGAAGTAAT 368076 36 100.0 30 NNNNNNNNNN .................................... CCTTTTTTGTAACTCCTATTTGCAGCTATG 368142 36 100.0 30 NNNNNNNNNN .................................... ATTACTTTTCGAAAAAAAGCCGTATTATAG 368208 36 100.0 30 NNNNNNNNNN .................................... TCTTTGTATTATAAAGTTAGCAGAGGAAAA 368274 36 100.0 30 NNNNNNNNNN .................................... GAATCTACCACCCTCAATACTCCGCCTATT 368340 36 100.0 30 NNNNNNNNNN .................................... GTCAACATCACCGCGATCACTACAAACAGC 368406 36 100.0 30 NNNNNNNNNN .................................... GAATGAAAAGGACAAGGAAAAAGCTGCCCT 368472 36 100.0 30 NNNNNNNNNN .................................... TGATTATTTGGAAGGCATGAGTAAATGCTG 368538 36 100.0 30 NNNNNNNNNN .................................... GCAGTAACTCACAAGCCACTTTGAGAGTTG 368604 36 100.0 30 NNNNNNNNNN .................................... TTCGACGCTTGTCGAAAAGGCAATCAAGGC 368670 36 100.0 30 NNNNNNNNNN .................................... CGAGAAGTTATTATTCTGAACTTCACATCG 368736 36 100.0 30 NNNNNNNNNN .................................... CTTTGGTATCAATTAGGATTTCCTAAAGTC 368802 36 100.0 30 NNNNNNNNNN .................................... TACAATGATTGCTTGTTGTTCTGATGGAAC 368868 36 100.0 30 NNNNNNNNNN .................................... TAGCCTCACCATTATAAAGCAATTCGCATG 368934 36 100.0 30 NNNNNNNNNN .................................... TGTTACGTCAAAAAATCCAATAAGTTGAAG 369000 36 100.0 30 NNNNNNNNNN .................................... CCTGATAAGGAAGATTGGCGAAAGAAGGTA 369066 36 100.0 30 NNNNNNNNNN .................................... TGCTACATCAAATAACCCTACAAGTTGAAG 369132 36 100.0 30 NNNNNNNNNN .................................... CCAAAAGTTCACAGTCATCCGAGTAGACGT 369198 36 100.0 30 NNNNNNNNNN .................................... CTATCTACTTTTGGGAACCCTAATTGGTAC 369264 36 100.0 30 NNNNNNNNNN .................................... TTTCTTCTGTTTGTCCATGTCCAAACCTCC 369330 36 100.0 30 NNNNNNNNNN .................................... AACAATGTGTGATTTTTCGGACTTAGTCCC 369396 36 100.0 30 NNNNNNNNNN .................................... AAGGGAATAACCTTACCATTCTGTCTTATG 369462 36 100.0 30 NNNNNNNNNN .................................... TTCCCAAAAGTTGATGCTGATACGATTGGT 369528 36 100.0 30 NNNNNNNNNN .................................... AACAATCAGCCGTGAGGGAATACGCCGCGT 369594 36 100.0 30 NNNNNNNNNN .................................... AGGTTAATGATGAAAAAAATAATAACTACT 369660 36 100.0 30 NNNNNNNNNN .................................... GGGCATATTATGCAGATATGCAACGAAACG 369726 36 100.0 30 NNNNNNNNNN .................................... CTTGGAAAAGAATTTATAAAATGCGAAGTT 369792 36 100.0 30 NNNNNNNNNN .................................... GAACATATGCTCGCTCTTTCTCGAGTACTC 369858 36 100.0 30 NNNNNNNNNN .................................... AAACTTTGAGGTACTAAATAAAACAAGTCA 369924 36 100.0 30 NNNNNNNNNN ...........................G........ ACCTTTCAATAGTAGCATCGGGCAAACCAG 369990 36 100.0 30 NNNNNNNNNN ...........................G........ GTCTCTAGTTACTTTACGTATAAACTCTAT 370056 36 100.0 30 NNNNNNNNNN ...........A...............G........ GGGCATATTATGCAGATATGCAACGAAACG 370122 36 100.0 30 NNNNNNNNNN .................................... CTTGGAAAAGAATTTATAAAATGCGAAGTT 370188 36 100.0 30 NNNNNNNNNN .................................... ATGCGATATATCTATGACTTTACCTATTCT 370254 36 100.0 30 NNNNNNNNNN .................................... AAACTTTGAGGTACTAAATAAAACAAGTCA 370320 36 100.0 30 NNNNNNNNNN .................................... ATATCTTTTGTCGTTAAAGTTAGTAAAAAA 370386 36 100.0 30 NNNNNNNNNN .................................... TTTGAAATTCCCCAAATGTCAATTGTTTTC 370452 36 100.0 30 NNNNNNNNNN .................................... GAAAATGCAGGCGGTTCCACTGGAGAGGTT 370518 36 100.0 30 NNNNNNNNNN .................................... TAATTCAAAAAAAGGTCTTGGTTTGAAAGG 370584 36 100.0 30 NNNNNNNNNN .................................... AGCCCGCCCTGCGGAATTGCACGGCCCGTT 370650 36 100.0 30 NNNNNNNNNN .................................... ATTGAGCGTCAAGCACCCGGTAAGCCCACC 370716 36 100.0 30 NNNNNNNNNN .................................... TTGGTTATTCGACTTTTGATTTGAGCTATC 370782 36 100.0 30 NNNNNNNNNN .................................... CTCGCTCGAGCACAACAGGTGGCTGTCCAC 370848 36 100.0 30 NNNNNNNNNN .................................... TTTCCAGCTAGAGCATCAAAGTTTATAGGG 370914 36 100.0 1 NNNNNNNNNN ..........................ACAAC...G. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 58 36 29 GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [96,132] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_002977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 679953 37 100.0 34 NNNNNNNNNN T.CAACCCAG.G......................... CGTGAGGCCAAGCTGCATGGGTGAGCCGACCGAT 680024 37 100.0 37 NNNNNNNNNN ..................................... CGCAATGTCGTCCAACCATGGTTTAGCATGACCGTGT 680098 37 100.0 35 NNNNNNNNNN ..................................... ATGGCGGCGGTCATGCCTGGCGCGCCGCCGGCCTG 680170 37 100.0 34 NNNNNNNNNN ..................................... CAGATTAATTCCGCAAAAATAGCCAAAGCTAATA 680241 37 100.0 36 NNNNNNNNNN ..................................... AAGTTTTTTGCTAATAGTTTCAATTATGATCATCAT 680314 37 100.0 35 NNNNNNNNNN ..................................... GATCTGCGCGGCGCCAATCTTATCCATGCCAATTT 680386 37 100.0 36 NNNNNNNNNN ..................................... CACTAGCACGGTGTCATTTTGACCACCGATGGAGAC 680459 37 100.0 34 NNNNNNNNNN ..................................... AGAATACGATTCCAATGGTAATTTAATTTATTAT 680530 37 100.0 34 NNNNNNNNNN ..................................... CCTGAGACGGGCGCGCGAAGGCGGAACCTGCTGG 680601 37 100.0 37 NNNNNNNNNN ..................................... CCTTCATGGGCACGGGCATCCCGGTGTTCTGGTCGAT 680675 37 100.0 36 NNNNNNNNNN ..................................... CGCGTTGTCCACGGCCACCGCGGGGGATGGCGCATT 680748 37 100.0 34 NNNNNNNNNN ..................................... ACACGCTTTTGCAAAAGCGTACAATGGGTTCCCG 680819 37 100.0 34 NNNNNNNNNN ..................................... CGGGGGAGGTTCGGATCGCTCCGGTTCCAGCAGG 680890 37 100.0 34 NNNNNNNNNN ..................................... GACAGTGCCGCCCCTGCGCCAGCTCCAGATCGAG 680961 37 100.0 34 NNNNNNNNNN ..................................... CCATGGCTTCCGCCACCTTGGTCACTCCGCCGAA 681032 37 100.0 35 NNNNNNNNNN ..................................... AATGCGTGACGCATCATCTCGCCTGCGCCTGCCGG 681104 37 100.0 36 NNNNNNNNNN ..................................... TTGCCCACAATTACAACCATGGTTGACAGCCTCACT 681177 37 100.0 34 NNNNNNNNNN ..................................... CCTAGGCGGCGCCATATCACCCATTGCGGAAGTT 681248 37 100.0 39 NNNNNNNNNN ..................................... GTCCTTCGCGCGTCCGGCCGACACCGCCGCCTACGCCGC 681324 37 100.0 34 NNNNNNNNNN ..................................... ATTCGGCGCTGAAGCCGGTTTTCCTCTGGATCAT 681395 37 100.0 34 NNNNNNNNNN ..................................... GAGTCCAGGCGCTCGGCAATGGGCCGCCGGATGA 681466 37 100.0 34 NNNNNNNNNN ..................................... AGCCGCATTCGGCATCATCTAGCTCTTGTTTCTT 681537 37 100.0 36 NNNNNNNNNN ..................................... GATCCGCATGATCCGCATGCTCCGCGCACGACTCCT 681610 37 100.0 37 NNNNNNNNNN ..................................... GTTCCGCGCCCTGTCGATGTCCTCAGGGCTGACCAGG 681684 37 100.0 35 NNNNNNNNNN ..................................... CCTATCGCGCCTTCTACGGCAAAGCCCCCGACGAG 681756 37 100.0 33 NNNNNNNNNN ..................................... TTCAAGGTGTGGAACATAGTTTACCTCTCTAGT 681826 37 100.0 35 NNNNNNNNNN ..................................... CGTCAACGTGGCATCGGCGCTGCTCACCTTGGCGA 681898 37 100.0 35 NNNNNNNNNN ..................................... GACACGGTGATCCATACGGCACCCACGATGGCGAT 681970 37 100.0 34 NNNNNNNNNN ..................................... CCGCCACGCCTTACAGGGCCTTGCGGATATAGCG 682041 37 100.0 38 NNNNNNNNNN ..................................... GGCGTCACGTTCCGCGGCACAAGGGAGGGCGGCAAGGG 682116 37 100.0 34 NNNNNNNNNN ..................................... TCTTGCCCGCTCCGGATTCGCCGACCACGGCGAG 682187 37 100.0 35 NNNNNNNNNN ..................................... ACCCGCTGCAAAAGCTGCTCGCGAAATTGGAGCCT 682259 37 100.0 36 NNNNNNNNNN ..................................... CCGCCTTGATGGCCTCCTTGATGTCGGCGGAGGACG 682332 37 100.0 34 NNNNNNNNNN ..................................... CTTTTCTATGGGCGTAATCGTGACGGCATTTGCT 682403 37 100.0 36 NNNNNNNNNN ..................................... GGTATCCCCACCACCACCACCACCGCCGGCCCCAAA 682476 37 100.0 36 NNNNNNNNNN ..................................... GGCGATGTAATGGAATCGTTACTGAAAATGTTTGCG 682549 37 100.0 34 NNNNNNNNNN ..................................... ACGCGATGGGCGGTAGATACAGCAGGCCGGCAGC 682620 37 100.0 34 NNNNNNNNNN ..................................... CCATTTTCTTTTCCTCGATTGGTTGATTGATGTG 682691 37 100.0 34 NNNNNNNNNN ..................................... GCGAAAAATCGCCGGTGGGATACATCTACACGGT 682762 37 100.0 35 NNNNNNNNNN ..................................... GCAAAGACCGCGAAGGCTGACAAAATTCGAGAAAT 682834 37 100.0 34 NNNNNNNNNN ..................................... GTTTGGCAAGCCGAGAAAGAAACCATTCTGAAAG 682905 37 100.0 34 NNNNNNNNNN ..................................... TGAGGAGACTTGGACCGGTCGCGGGATTGCCCCT 682976 37 100.0 36 NNNNNNNNNN ..................................... AAACCTGAGCCAAATTGGAACCTGAGGTTTAAATAT 683049 37 100.0 36 NNNNNNNNNN ..................................... GCAAGATTATGATTAACGGCACCTTTGGTAAGACCG 683122 37 100.0 33 NNNNNNNNNN ..................................... GGTATTCACACACAAATCGTGCCCATATTCAGA 683192 37 100.0 33 NNNNNNNNNN ..................................... GGTATTCACACACAAATCGTGCCCATATTCAGA 683262 37 100.0 35 NNNNNNNNNN ..................................... GTGCCGCCGAGCACGACATAAAAGCTCGTGACCGT 683334 37 100.0 35 NNNNNNNNNN ..................................... GTGAGGAAAGGTCCTAACAAAGTTAGGGTAAGCGT 683406 37 100.0 35 NNNNNNNNNN ..................................... ATAGCGTCCATGCTTGAGCATCAAGAGCATGTTGC 683478 37 100.0 34 NNNNNNNNNN ..................................... TCGCGGCAAACGCACTCCAAATGAATGTGAATAT 683549 37 100.0 36 NNNNNNNNNN ..................................... GCGACATGCGTTCTGGACAAGCGTCATGCTAGACCC 683622 37 100.0 36 NNNNNNNNNN ..................................... GTCACGGATTGGCCGGGGCGCTTGGACTAACCCGAG 683695 37 100.0 37 NNNNNNNNNN ..................................... AGCAAGGCTCGCTCAATCTTGCAAGACATCATGTAGA 683769 37 100.0 35 NNNNNNNNNN ..................................... AAGGGCGGCGGTCATCGCGGGCCGCCGCGAATAGC 683841 37 100.0 35 NNNNNNNNNN ..................................... CATCGCAAAGCCCAGTTGATCGCCCATTATCTGAG 683913 37 100.0 35 NNNNNNNNNN ..................................... GTAGCTCTTAGTCCTCATCCGCGCCATCAGCTAGC 683985 37 100.0 34 NNNNNNNNNN ..................................... ATCCGTCCGCGCCATCAAGGCGCGACTGACAAGA 684056 37 100.0 35 NNNNNNNNNN ..................................... GCTACGCAGCCCCATCGTGACGATGATCAGCCCTT 684128 37 100.0 35 NNNNNNNNNN ..................................... AGCCATCCTCGACCATCTGGCAATAATAGCTTGCA 684200 37 100.0 36 NNNNNNNNNN ..................................... GTCGCTACCGTTTCCAGTTTCAGCATAGTGTTGGCA 684273 37 100.0 34 NNNNNNNNNN ..................................... CATCATCATCATTAGCGTCCTCCTCAGGTCAGTC 684344 37 100.0 35 NNNNNNNNNN ..................................... CCAATAATCATCGGGATGTCGTAATGATTGCCATT 684416 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 63 37 34 GTTTCAATCCACTCCCGGCTATTTAGCCGGGAGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-14.90,-15.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1052,182] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 25997 25 100.0 38 AAAAGTTCAG ......................... TGTTAGTCGGTCTATGAATTTCGTGGTAAACGCAAAAT 26060 25 100.0 39 AACGCAAAAT ......................... TATCATATTTCATCATTTTCTTTCACTAACAAATATATT 26124 25 100.0 40 CAAATATATT ......................... GGTGAGGTCAAAGAATTAGAGAGTTGGCAATTATATAGTA 26189 25 100.0 40 TTATATAGTA ......................... CAGCTGACGTAGCCTCTGAGTTAGCTTTCCAGAAATATCT 26254 25 100.0 41 AGAAATATCT ......................... TATAATAAAGCCCTGGGAAAGGACAGACCCGATATTTTTCG 26320 25 100.0 39 ATATTTTTCG ......................... AGGACATTTGAGTATCTATAATATTCCAGAGCCAAGAGT 26384 25 100.0 36 AGCCAAGAGT ......................... TTGCTCAGCCTCATCAAATTTCTTCCTTTTCAATAA 26445 25 100.0 38 TTTTCAATAA ......................... TCAATTGTTTTCTTCAATTGTTTTTCTTCAGACATTTA 26508 25 100.0 37 CAGACATTTA ......................... ACCAATTCGGCTGGAGACATACTGGTGCAGGAGGATT 26570 25 100.0 39 CAGGAGGATT ......................... AATCCCTGATTCAAGAACTATTGAGGAATTACTTCATAG 26634 25 100.0 37 TACTTCATAG ......................... GTAGTTGGTTCTTGAGTATCCTTACATATTCATCTAT 26696 25 100.0 38 ATTCATCTAT ......................... TTGGCGTAACAATATTTGCTACTAACTTAGGTATTAAT 26759 25 100.0 38 AGGTATTAAT ......................... GATTATCAATGACAATTCACAGACTTGCTAATTTCAAA 26822 25 100.0 43 TAATTTCAAA ......................... ATAGTTAATCCTCTTTGTAGCAAAACTACTTTTAAATTCATTT 26890 25 100.0 38 AAATTCATTT ......................... ACAATGGAACTTCTGAAACTCAACTCGTTGGATTAGTA 26953 25 100.0 40 TGGATTAGTA ......................... AAGAACGAAATACGTGAGAACGGTTTTAGTATATATGTAT 27018 25 100.0 38 ATATATGTAT ......................... TATCAAATGTATGCCTATAGACGAATAATGAGATTAGT 27081 25 100.0 36 TGAGATTAGT ......................... TTTGTTTAGGACTTCTTCTAGTTCTGATCCTCCAAA 27142 25 92.0 40 ATCCTCCAAA AA....................... CACAACTTAAATATAAATATGCATTAAATGAAATTTCTAA 27207 25 100.0 40 AAATTTCTAA ......................... AATGCGTCTGCAATAACTACGTTATCCCTCTTCTGTACCT 27272 25 100.0 39 TTCTGTACCT ......................... TCTTTTGAGTTTATTAATTCTTCTTTTAAGTTCTTTAAC 27336 25 100.0 39 GTTCTTTAAC ......................... CCATTGAAATGCAAAAAGGTATGATAAAGACTCAAGCTA 27400 25 100.0 39 ACTCAAGCTA ......................... AACAGTTCCCCAGTTCTCAGGCCCGTTTCAACTAATAAT 27464 25 100.0 38 AACTAATAAT ......................... CAGAGATATTATTTAACATATGTCGCTCCAGATCTTAA 27527 25 100.0 39 CAGATCTTAA ......................... TGCGACCACCAACGCGTTAGCCGTTTACAGACTGCCCTC 27591 25 100.0 40 GACTGCCCTC ......................... ACGACTACAACAAGATACTACAAAAGTTGACAGAGATATT 27656 25 100.0 39 CAGAGATATT ......................... TTGTCTCTATGATTTCATGAATCGCATCTCTTAGTTTTG 27720 25 100.0 39 CTTAGTTTTG ......................... ATAAATGGTTTTCAGTTCCCTTAACGTTCATTTTTTGTA 27784 25 100.0 43 ATTTTTTGTA ......................... CTGCTATTCTTGCTGAGAAACTCGATTTAGCGGATATAGCAAT 27852 25 100.0 38 ATATAGCAAT ......................... GAACCTCCCGAAACACTCAAAGTTAAGAAGACTAAACC 27915 25 100.0 39 AGACTAAACC ......................... TTATAAATGTTGTATTAATAACTAGCTGACCGTTATACC 27979 25 100.0 38 CCGTTATACC ......................... AACACCACAATGTTATGTCGCTATGGGAGAATATAAGG 28042 25 100.0 41 GAATATAAGG ......................... TTTGAGACATTAACACTCTGTACACCAGACAGAGTAACCTT 28108 25 100.0 34 GAGTAACCTT ......................... TGAATTTCTTCACTCCAGAAAAGATAAATACTAC 28167 25 100.0 42 TAAATACTAC ......................... GAGAAAAAATAAATCCTTTAAAACTGACCTCCTCCCTCCTTC 28234 25 100.0 34 TCCCTCCTTC ......................... ATAAGGAGCTTAAGGAGAGGATAGTAAAGGAGTA 28293 25 100.0 39 TAAAGGAGTA ......................... GTGGGCATGAACTTTCTACGCCACGCATTGAGGATATAA 28357 25 100.0 39 GAGGATATAA ......................... TGAAGCTGGTGCTTACGGCTACCTCTGTGAGCATGTAAA 28421 25 100.0 37 AGCATGTAAA ......................... TAGAAGATATAGAGCAAAATGTAAATAAAGAAGATTT 28483 25 100.0 35 AAGAAGATTT ......................... CTTACTCATCTTCCTTCACCTCCATGTCGAATGAT 28543 25 100.0 36 GTCGAATGAT ......................... ATATAACAGGGAAACCGAAGAAATTTGGAGTAGACT 28604 25 100.0 41 GGAGTAGACT ......................... TTCTGTTGATTTTTTCTTCTTCCATTTTGCGATCACCTTTC 28670 25 100.0 39 ATCACCTTTC ......................... AACAGTGGAAGGTTTACCTACAAGCTCTGCTTTACCACG 28734 25 100.0 39 CTTTACCACG ......................... ACCCAGATCCGCTTTACATAGAGGCTGTCGAAATAAACG 28798 25 100.0 40 GAAATAAACG ......................... ATTCTACTAATGGTGCAGGGAATATTGTGGAATTTGTATA 28863 25 100.0 41 AATTTGTATA ......................... ATCATTATGCCCACCTCAGTGGTGCAGTACTGCTAACGCGA 28929 25 100.0 38 GCTAACGCGA ......................... ATAGTACAAATTTTTAGAAGAACAAAAACCATAATTAG 28992 25 100.0 40 CCATAATTAG ......................... AGAGCATCTCTGGTATGTCCGGTGAGGTGATAGTGTTATG 29057 25 100.0 40 TAGTGTTATG ......................... AAGCGTCTACTTTTTAGTAGATTCTTATAAACTCATAAAA 29122 25 100.0 40 ACTCATAAAA ......................... ATGACATTGCGTCTGCGATGACTGAAGAGGAGTACAAAAA 29187 25 100.0 36 AGTACAAAAA ......................... GCGATGATGACGGATGGACAGGCTGACTTAAGATGA 29248 25 100.0 38 CTTAAGATGA ......................... ACGATTTTTGGCAATTAGTGGAAGAAAAGAAGCTAACA 29311 25 100.0 38 GAAGCTAACA ......................... GACTCCAGTTACATAAATTGCAAATAACATAATAATCC 29374 25 100.0 41 ATAATAATCC ......................... GTACACCTAATGGAAAATGTAATCATCATGGACTGAGGGCG 29440 25 100.0 33 ACTGAGGGCG ......................... CTGGACTACAGTCAGTCAAAATCTCTAATTCAA 29498 25 100.0 39 TCTAATTCAA ......................... GAAGTTGTTTCTTGATATTTTCAAATTCTACAATTGTAT 29562 25 100.0 39 ACAATTGTAT ......................... TGTGCCGATAATAAACCCTGCGTATCGAAGGGCTGTATC 29626 25 100.0 39 GGGCTGTATC ......................... GTTAACTTCTCAACTTGAGAAACTCTAAACTTTATAATC 29690 25 100.0 38 CTTTATAATC ......................... TATCTTAAGAGACTTTATGGAAATAAAGCCTTCAATAA 29753 25 100.0 44 CCTTCAATAA ......................... GAGGATTTTGTAAGAATAGATGAAATCAAAGCGGAATATAAAAT 29822 25 100.0 39 AATATAAAAT ......................... AGAAATTGAAAGTTTAGAAAGAAAAACATATATATCACT 29886 25 100.0 39 ATATATCACT ......................... CTCCAGTGGTTCTCATTTTGTGTGACGGTACTGAGTATA 29950 25 100.0 35 ACTGAGTATA ......................... TTTATTGAAGACTATGATGAAGTTATTGTAGATAA 30010 25 100.0 40 TTGTAGATAA ......................... GTGGTCCATATCCGCCTTCATAAGGTTTAGGTAAAGTTAT 30075 25 100.0 37 GTAAAGTTAT ......................... ATAATTGCGGGGCAATTGCACCGTACCATGATGAAGC 30137 25 100.0 40 ATGATGAAGC ......................... ACGGGAAAATAATACATAACGTGAAAGATGTTAATAAAAT 30202 25 100.0 39 TTAATAAAAT ......................... GAAGTAGAAATAACAGAAAACCTCCCGTATCCTATTAAT 30266 25 100.0 40 TCCTATTAAT ......................... GGAATACCATCAACAAGCAACTTCTTGCCCTCATATTTTT 30331 25 100.0 39 TCATATTTTT ......................... TTATTTGAAGGAATACAGTGTTTCTGACATGTCCTACAC 30395 25 100.0 39 TGTCCTACAC ......................... AAAGTAGAACACCCGGGCAGAGTAAGAAAATATTTAGAA 30459 25 100.0 37 ATATTTAGAA ......................... TTAAAATCGGGTCGGCAAATCCAGAAAGGAAACTGAA 30521 25 100.0 39 GGAAACTGAA ......................... AGAAGAAGAGGATAATACTTATACACCACATTATCTCAT 30585 25 100.0 ATTATCTCAT ......................... CGTTTTGTTT ========== ====== ====== ====== ========== ========================= 73 25 38 CTTTCAATTCCTTTTGGGATTCATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-4.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [867,541] Score: 0/0.18 # # Final direction: R [0.37,5.68 Confidence: HIGH] >NC_002977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 971790 28 92.9 33 CCGCCGGGGT --.......................... CCGGTGAGGCGGAAGCCGCAGACGGTCCAGCCG 971851 28 100.0 33 GGTCCAGCCG ............................ GCGATCTGCTCAGCCATCGGGAAATCCGCGGCC 971912 28 100.0 33 ATCCGCGGCC ............................ AAAAATTCCTTACGCTTCAATCGCTTATCTCAC 971973 28 100.0 33 CTTATCTCAC ............................ GCAACTGCCGCATGAGCTGCGCGATGGTATCCG 972034 28 100.0 33 ATGGTATCCG ............................ AAGTTGCGGCCGGCCGATCGCATGCCATGACGA 972095 28 100.0 33 GCCATGACGA ............................ GCTCACCGAACGTCAACGGACTTTCTGCCAACA 972156 28 100.0 33 TCTGCCAACA ............................ GCTCGCGCCGAATATGAGCGTGCGCCAGGGCAG 972217 28 100.0 GCCAGGGCAG ............................ TCTATAGGCT ========== ====== ====== ====== ========== ============================ 8 28 33 GGTCTATCCCCGCGTGTGCGGGGGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [109,60] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2664299 24 100.0 40 ATGTTTAATT ........................ TCTCTTTCAAATCACTTCAGTGGGGCTAGGATATACTTAG 2664363 24 100.0 43 ATATACTTAG ........................ AAAATGAGCTTGAAAAAATCGAAAACGAACTCAGGTTAATGAG 2664430 24 100.0 40 GGTTAATGAG ........................ CCGAATTTACCTAGTGTTGTTAGCATAAGAAGAAGTAGGA 2664494 24 100.0 42 AGAAGTAGGA ........................ CCAAAGATAGGGACATGGGAGGCGCTAGCGAAGTATAAAGTT 2664560 24 100.0 41 GTATAAAGTT ........................ TGGACCAGATCGATAGCCGGGATTATAATAGATTTAATAAT 2664625 24 100.0 40 ATTTAATAAT ........................ TTTATTATCATAATAATACCAGACTTTTCGTACTCTTTCC 2664689 24 100.0 40 TACTCTTTCC ........................ ATTCAATATTTTGTATGGAGTTACAGCCCATACAACGTTT 2664753 24 100.0 41 TACAACGTTT ........................ AGAACTTCGCGGTAAGGCAAACATCAATTGCAGTTTCTAGT 2664818 24 100.0 42 AGTTTCTAGT ........................ GGGGTAGCAATGCTAATTTTGGGTACTGATGATTCGGGTAAA 2664884 24 100.0 43 TTCGGGTAAA ........................ CAAATGTTTTGGGTAATGATATACCACAGCTTGTAGCCTATTT 2664951 24 100.0 43 TAGCCTATTT ........................ AGGGTGTCGATATACCTAACATTCGTTCATTAGTGTTAGCGTC 2665018 24 100.0 43 TGTTAGCGTC ........................ ATTAATTACTATGGAATCCGTGATATCCGGATAAGGCAATCCG 2665085 24 100.0 40 AGGCAATCCG ........................ TTCGTTTCACGTCTTTCATAGTTAAAAATCAGTGTGAGAG 2665149 24 100.0 42 AGTGTGAGAG ........................ GTAAATGAATTGCCTGGTCTTCTCCACTCTGACAGTTGTAGT 2665215 24 100.0 41 CAGTTGTAGT ........................ ATAAGCATCCCGTTATTAGGACCTAACACTACTACAGTCGT 2665280 24 58.3 29 CTACAGTCGT ..............---------- TATTAATTTACCGTATCCGCTTTTGCAAA 2665333 24 100.0 38 CTTTTGCAAA ........................ CCAAAGCTGATGACTGTTAAACTCGAGTCTTCAGATCA 2665395 24 100.0 45 CTTCAGATCA ........................ AGGGCGGATTAGCAGTAAACGAAAGCGATTCAGTAGAATACGATA 2665464 24 100.0 41 GAATACGATA ........................ CTTTACAATAAGAAAATTTAACAAAGACCTGAGACAGTTTG 2665529 24 100.0 40 AGACAGTTTG ........................ AAAAATTAGAGAAGCTCGCAGAGGATGATGCTGAGACAAA 2665593 24 100.0 CTGAGACAAA ........................ ATGAGGTAGT ========== ====== ====== ====== ========== ======================== 21 24 40 CTTTCAATTCCATTAAGGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [474,741] Score: 0/0.18 # # Final direction: R [0.68,4.87 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2665648 24 100.0 42 GCTAATTTGT ........................ CAAGATGAAGTCGCATTAATTATAAGTTATCATGATAATGAC 2665714 24 100.0 40 TGATAATGAC ........................ AACTCATTAACTGAAAAGCCAATTGATCATCTATAACAGA 2665778 24 100.0 37 CTATAACAGA ........................ TAATATTAACAGTAATTTTTGAGTTATTAATGATATT 2665839 24 100.0 47 TAATGATATT ........................ AAAAATTCAATCGCTTGTTGGTCAGCTGAACCGTCATAATATTCCAA 2665910 24 100.0 43 AATATTCCAA ........................ CTACAAAACCATTACTTTGTAATGAGTGAGATAGAGCTCCAAA 2665977 24 100.0 40 GAGCTCCAAA ........................ CTACATGGATTGGAGCGCTAGATGCCGGCACACTAAAAGT 2666041 24 100.0 41 CACTAAAAGT ........................ ATGATTGGTGGTAAAGCTGGGGATATTTTGGCTGGTGCTGG 2666106 24 100.0 41 CTGGTGCTGG ........................ GTATTCGAAACTTAATTTGAATATCTTCCCCTTAGGGGTAG 2666171 24 100.0 42 TTAGGGGTAG ........................ TTTACACTAGTAAACTTAGTTACGTTAGTCTGGAAGTTCTGT 2666237 24 100.0 43 GAAGTTCTGT ........................ ATTTGCCCACTCTTCCAAATATGATATAGATATCTGTTTTAAT 2666304 24 100.0 38 CTGTTTTAAT ........................ CAGTTATATAGTAAAAGTTACGTCGAGTATGGAAAAAG 2666366 24 100.0 42 ATGGAAAAAG ........................ TCTTTATTGTGCATGACAGCCTAAATAAATATGCTCTGACTA 2666432 24 100.0 41 GCTCTGACTA ........................ CACAGCTAGAAAAGAACAGAGTTCAAGTAAAAATGAACAAA 2666497 24 100.0 44 AATGAACAAA ........................ AACTCAGAGTAATTACAGTTAAACTGGATGAAGAACTAGTCCAA 2666565 24 100.0 40 ACTAGTCCAA ........................ CTGAACTTGGTGTACCGTTAGACGTCATAGACTTTATCCA 2666629 24 100.0 39 ACTTTATCCA ........................ TTAAAATATTGCTTAAGCTCTTCCTCATCGTCAATAAAT 2666692 24 100.0 43 GTCAATAAAT ........................ CTACCCCTAGGGTGTCTTAAGTCAATTCTTTTCCTATTTTTTT 2666759 24 100.0 46 CTATTTTTTT ........................ TTCTAAGAGCTTAACCACAAACAAATTTGACATAAAATAAGATAAT 2666829 24 100.0 39 ATAAGATAAT ........................ TGGACTACAGTCAGTCAAAATCTCTAATTCAACATTTAA 2666892 24 100.0 39 CAACATTTAA ........................ TTCTGACCAGTCGACATGGAATTTTATAGTGAATAACAT 2666955 24 100.0 46 TGAATAACAT ........................ ATAGGAACTAAAGATCCCTGTTGATATTTTACTCCAGTAGTAGCAT 2667025 24 100.0 41 GTAGTAGCAT ........................ CTGCTTAACAAGTTAAGCAGCAATTGTAGAGTGTTATTCTT 2667090 24 100.0 39 TGTTATTCTT ........................ TTCTGCTTTGTCTCCTAATTTTTGTTTTATTGGCAATTC 2667153 24 100.0 TTGGCAATTC ........................ TGATTGTTTT ========== ====== ====== ====== ========== ======================== 24 24 41 CTTTCAATTCCATTAAGGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1823,230] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_003116 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 608413 36 94.4 30 GCAACGGCTG ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 608479 36 100.0 30 CGGAAATTAA .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 608545 36 100.0 30 CGCTTTCTTT .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 608611 36 100.0 30 CGACCCGAAT .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 608677 36 100.0 30 AATCCAGTTA .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 608743 36 100.0 30 TGCAAATGCG .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 608809 36 100.0 30 GTTTGAACGA .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 608875 36 100.0 30 ACGCAGTAGT .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 608941 36 100.0 30 ACTGGTACAG .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 609007 36 100.0 30 ACTGGTACAG .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 609073 36 100.0 30 CAAGGTGCTT .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 609139 36 100.0 30 ACTCGAGCAT .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 609205 36 100.0 30 GCACCCGCTT .................................... CCAAATAGAAATACATACGCCGAGTAATTA 609271 36 100.0 30 CGAGTAATTA .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 609337 36 100.0 30 GCCTTTTTTA .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 609403 36 100.0 30 GCCACAAAAC .................................... TTAAAATAATAACCCAATACACGATGTTAA 609469 36 100.0 ACGATGTTAA .................................... ACTTCGACGG ========== ====== ====== ====== ========== ==================================== 17 36 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1771,65] Score: 0.18/0.18 # # Final direction: R [0.68,1.05 Confidence: LOW] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2671319 24 100.0 40 ATGTTGTTTC ........................ TTACAGTAAAAGAGAAGTACTAACGTTGATGAGGAAACAT 2671383 24 100.0 41 GAGGAAACAT ........................ ACTTGTGATTGAATCTCGTATAATTTAAGCTTGGCATCATA 2671448 24 100.0 42 TGGCATCATA ........................ CTAGACTGAGTTAAATTGTACATGCCTAAAATATAATTAATA 2671514 24 100.0 39 ATAATTAATA ........................ CTCGATTTCATTAACAACTTTCCTGAGGAGGACGAGTTT 2671577 24 100.0 41 GGACGAGTTT ........................ AAAGTGCTTACGATTTATCTGGAACCCCTCTCGTCGGGTGT 2671642 24 100.0 43 CGTCGGGTGT ........................ AAAGCTGCAGAGAATAGCTAGGTTAGTCCAGGGTAAGCAAACA 2671709 24 100.0 42 TAAGCAAACA ........................ GTTACAACTATTACAATTTTTGGAATTTTCTTCTACAATTAA 2671775 24 100.0 43 CTACAATTAA ........................ TGGGTCGTGGAAGTAATCAGAGAGACTTACTGCGAATACTGTG 2671842 24 100.0 39 GAATACTGTG ........................ TAACTCATTTGTGTTTGTTAATAAGTTTTGACGTAGTCT 2671905 24 100.0 40 GACGTAGTCT ........................ GTACACTATCGTAGATTTTCCGTACTCATAATCAATTTCA 2671969 24 100.0 42 ATCAATTTCA ........................ ACGCAAGTGCCCACGATACCTGGGGCGATGGCGTTGATGCAA 2672035 24 100.0 41 GTTGATGCAA ........................ CATCTTGCATGCTGCATACGTTTCATAAAAATGAGGATCAA 2672100 24 100.0 41 TGAGGATCAA ........................ CCAGAGATTGAATTAGCTGAATTATATTCTTTTACATGTAC 2672165 24 100.0 45 TTACATGTAC ........................ CGTAGACGGGTGAACCGTAGTAAGAAGGACTATTAGTAGGTGCCC 2672234 24 100.0 43 GTAGGTGCCC ........................ TCTACGTTACGAATCAGAATTCACAATATGTAATGTATGTAAA 2672301 24 100.0 44 TGTATGTAAA ........................ ATAGAAGTTGATGAGACTTATGATGTTAACATTTGGTATCAAAA 2672369 24 100.0 41 GGTATCAAAA ........................ GTGAGAGCTTTTTAATAAGTACTAGCGTATTCTATTTACCC 2672434 24 100.0 36 CTATTTACCC ........................ GCAGGTAGTATTATGCAAGGTCCAATCAGGGTTATA 2672494 24 100.0 47 CAGGGTTATA ........................ TACCACTTGTATTGTTGTACTACTATTTAACCATAAAATTTCCATTA 2672565 24 100.0 38 ATTTCCATTA ........................ CAAACTTCTATTATTATGTTGTTTGGTCTTCAAGTGAC 2672627 24 100.0 42 TTCAAGTGAC ........................ ATTAATTGCTAATGTTAAAGGATCTTTCTCTTTAATTCTAAA 2672693 24 100.0 41 TAATTCTAAA ........................ ATAGAATAAAGATTGTTAGATTTCTAGTTTTCAACAATTGT 2672758 24 100.0 40 CAACAATTGT ........................ ATAAGAATAATAAGTTATTATGACTACTCAGAAGTCGTGA 2672822 24 100.0 42 GAAGTCGTGA ........................ ATTGAATAATTGTAGAATCTTAAAGCTTGTCAGTCTATAGAT 2672888 24 100.0 43 GTCTATAGAT ........................ GGAAGATGTTATCCTTTTTTTAAAAGTTTTAAGATTTAGTAGT 2672955 24 100.0 40 ATTTAGTAGT ........................ AAGAGGAGCGGGCTTAACGGTATTGTAATTGTTATAAAAA 2673019 24 100.0 47 GTTATAAAAA ........................ TAAGATAAAGTCTATTTTTTTATCAGAATTTCCAGATGCTAAATTTG 2673090 24 100.0 41 GCTAAATTTG ........................ ACATTAAGATATATTAATATTGCCAAACTTATGGAAAGTAA 2673155 24 100.0 40 TGGAAAGTAA ........................ ATTCTTCTAATTCTTCTAACATAGATATTAATAAACTCAA 2673219 24 100.0 45 ATAAACTCAA ........................ TCTGCTTATTTTGTAGAAAAACTCTACAGGGAGGGAAGAGCGTTA 2673288 24 100.0 38 AAGAGCGTTA ........................ GCGAATGCTTCTTCTAATTGGTATAGTGTTGTAATAAA 2673350 24 100.0 39 TTGTAATAAA ........................ GGGAGTCAGTAATTTTGCCTAAGCCATTGCACGTATAAG 2673413 24 100.0 38 CACGTATAAG ........................ ACGCTTAGACCAGATAGAAAAGAGACTCAAGAAGAAAA 2673475 24 100.0 39 AAGAAGAAAA ........................ ATATAATGATTGCGTCCAAGAAGTGGCATTAGATGATGT 2673538 24 100.0 40 TAGATGATGT ........................ TTGCAAATAGGGAAGATGCAGTAAAGTATTACATTACATT 2673602 24 100.0 41 ACATTACATT ........................ AAGATTAAAAAGTTTAGAAGTATACCTTAATTATTAGTTTT 2673667 24 100.0 37 TATTAGTTTT ........................ TCATCTGTGGAATTTGTAATTGAGGATAGCTAAAGTT 2673728 24 100.0 41 AGCTAAAGTT ........................ AATGAGTTATGAAGAAGTTTGTTCTTTTATAAAAGAAAAAG 2673793 24 100.0 41 AAAGAAAAAG ........................ TTCCTTTCTCTAGTCCTTGCCCTATCAAACACTGTTATAAC 2673858 24 100.0 41 CTGTTATAAC ........................ AATATGAGGATGAGGTATCTGAGGGTAGCGCTTACAAGGCT 2673923 24 100.0 38 TTACAAGGCT ........................ AATGTTTACGGTAATACTTATGAGTATACCAGTACTAC 2673985 24 100.0 45 CCAGTACTAC ........................ TTAATACTTATTATAGCTACAGTTATTATTGCCCTTATAGTTATA 2674054 24 100.0 41 TATAGTTATA ........................ TCTATTTTTCTAGATGGTGGAAACGGTAAGGCATAATAGAA 2674119 24 100.0 36 CATAATAGAA ........................ TACACTTAACGATATCCCAATTTACAAAATAATAAA 2674179 24 100.0 39 AAATAATAAA ........................ CACCCCTCAGCAGTACTTAGCAGCAGTCAGCTCTCTTAA 2674242 24 100.0 40 GCTCTCTTAA ........................ CTGGTGCACTAACGGGTGCTGTGGTAGGTTCATTTGTTCC 2674306 24 100.0 39 CATTTGTTCC ........................ TTGTTGTGTTCTCTCTCTTTGCGATCTCTTCTAGTTTCT 2674369 24 100.0 38 TCTAGTTTCT ........................ ATAATTATGATCCTTCACTAGACCAAAAGGAAGAAGAC 2674431 24 100.0 39 GGAAGAAGAC ........................ GACACGATAAATCATTCCGATATTAACAAAAAAATAGAT 2674494 24 100.0 41 AAAAATAGAT ........................ TATCGTTTTGAACTTTGCATGGACGGTATGTATAACTCTAA 2674559 24 100.0 43 ATAACTCTAA ........................ ATTTTTAACGTAATTTTGGCTCAGAAAGACGTGACAAAAATGG 2674626 24 100.0 41 ACAAAAATGG ........................ TGACTTATTAGAACAGCTAGTGTATGCTATAAATCCAAACA 2674691 24 100.0 40 AATCCAAACA ........................ ATTATCTCCACATGATATACGCCGTAGCGGGGCATATTGG 2674755 24 100.0 41 GGCATATTGG ........................ TAGAAACTTAGACGAAATAACAGAGAAATACGATATACAAC 2674820 24 100.0 40 GATATACAAC ........................ TGACATGAAAGCGACAAAACGCCAAATAGAATTAATAAAG 2674884 24 100.0 39 ATTAATAAAG ........................ CGATTATTTATATATGCTCTTTGTGCTGTCGGCAGTGAG 2674947 24 100.0 40 CGGCAGTGAG ........................ TCTGCCAGCTTACTCATCTTAGCCCACCTCCAACAACTTA 2675011 24 100.0 43 CAACAACTTA ........................ CTTCTGATTACGATAGACCTTTCCAGTTTATGTGTGTTACAAT 2675078 24 100.0 40 GTGTTACAAT ........................ ATAGTCAAGTGAGCCTCTGTTCCTTAAAGAAAATACAATG 2675142 24 100.0 42 AAATACAATG ........................ ACTTTATACGTATCCCCGCTTGTCGGCACCTTAACTGATTCT 2675208 24 100.0 41 AACTGATTCT ........................ AAAATAGCACCAGGAAGGAGACTATACCACCGGGTTATGAT 2675273 24 100.0 46 GGGTTATGAT ........................ GACCTCAGTTTAATGATATGACCTAGTTTTTACTTCCCAGTTAACT 2675343 24 100.0 43 CCAGTTAACT ........................ CTACTACTGATGATGGGAAAGCGTCAGAAGGATCTAAATTAAC 2675410 24 100.0 40 CTAAATTAAC ........................ AACTGCCCTGAGCGTGATGTTAAACTCCCCAGTTTAATAG 2675474 24 100.0 41 AGTTTAATAG ........................ CTGGTGAGGTTAGAATGCATGATGTAATACGTTTAGGAGAA 2675539 24 100.0 43 TTTAGGAGAA ........................ GAGACTGATTACTAGAAGAATTAAATAATTTTTGCATATCTTG 2675606 24 100.0 44 GCATATCTTG ........................ ATCTCATGTTGATATTCTTCTTTAGCCTTCTCTAGAGCCATTTC 2675674 24 100.0 36 GAGCCATTTC ........................ TTGCTCTGGTACTAGTACAACTCTCTTTTGCCATCT 2675734 24 100.0 41 TTTGCCATCT ........................ TACATATTTCTGCTGTAGCTGCCATTTATATCATCTTACTT 2675799 24 100.0 CATCTTACTT ........................ ACTATTACTC ========== ====== ====== ====== ========== ======================== 70 24 40 CTTTCAATTCCATTATGGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [582,3062] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2675862 24 100.0 43 TTACAATCAA ........................ ATCGCGGGCTGCTGGGTCAAGTTCAGACATGTGATGAGCGTAA 2675929 24 100.0 40 ATGAGCGTAA ........................ TCTATTATAGAGAAGAGATAGTACTTTTGCTTCTGGAGTT 2675993 24 100.0 43 TTCTGGAGTT ........................ TAAAAATTTTCCAATTTGAGGATTTCTATCATACTAAATATAT 2676060 24 100.0 42 CTAAATATAT ........................ TTGGAGAACCACCCTGAGCTTTCCGAAATCGTTAACAATACG 2676126 24 100.0 38 TAACAATACG ........................ TTCTGCACTAGAAGAACCATGCTCTTTATCAGAATTGT 2676188 24 100.0 40 TCAGAATTGT ........................ AGCCAGCGAAGGATATGCAGTGATCGTTCATCATACTGAT 2676252 24 100.0 44 TCATACTGAT ........................ CCCTCGCTTAAACAGAAACTGTTAGAGCAAGGCATAATTACAGA 2676320 24 100.0 43 TAATTACAGA ........................ TTAAAGGCGGTGCACCGCTACCCCCGTTTGCGGTAATGTAAAA 2676387 24 100.0 41 TAATGTAAAA ........................ TGTTCATATTTCATATTTGCAATCTTCAAAATTTCCATAAA 2676452 24 100.0 42 TTTCCATAAA ........................ AGCACCGAGTATAGCACCTTCATTAGCTTCCTGAAGGACCTG 2676518 24 100.0 41 GAAGGACCTG ........................ ATAAACCAAAGAAGTGACATTTACGAATACTACTTTGAGTT 2676583 24 100.0 39 ACTTTGAGTT ........................ CCAAAACTAATGAGTATCATAATCGAGTCACCAGATCAT 2676646 24 100.0 39 ACCAGATCAT ........................ CACAGGTATCGCGAGGTCAGGGTTTGCTTTAACGAAATA 2676709 24 100.0 41 TAACGAAATA ........................ TCTGCATTGTGTTATGATAAATACGGTCAGCTTGCACGAGT 2676774 24 100.0 43 TTGCACGAGT ........................ AAAGTTGAAGTAAAGGTTGTTAAATCATTAGAAAAATTGCCTA 2676841 24 100.0 41 AAATTGCCTA ........................ CTCTATCCGGAAGAGTTTGCTAAGATTGACGAATTTTGTAG 2676906 24 100.0 40 AATTTTGTAG ........................ TGTTCAAGGAGAAAGCAATAATCAAGGTAAGACAAACTGT 2676970 24 100.0 46 GACAAACTGT ........................ TACAGTCCTGTCGACGTAACATTTCGCTTTGCGTAAGCAATACTGT 2677040 24 100.0 39 GCAATACTGT ........................ ATCGGTAACTCATCATAATAAGTAGCATAAACTACTCCA 2677103 24 95.8 41 AACTACTCCA .......................T ATAGTCGTTATCTATAGCGTCCTGAATCCTCTCTAAAGCGT 2677168 24 100.0 39 TCTAAAGCGT ........................ GAAATCCAAAGGAGAAAGGAGAAAAAAGCGGAAATTTTA 2677231 24 100.0 40 GGAAATTTTA ........................ AACCAGTTTGAGGAGTTCCTTAACAAGTTCATCTTCAGAG 2677295 24 100.0 43 ATCTTCAGAG ........................ CGTTCATTTTATTAGGGCAGTTGGGTATACACAAGAATTATCA 2677362 24 100.0 40 AGAATTATCA ........................ ACGGGGTATATTGTGATCTGGTTCTGACAAAGACGTTGAA 2677426 24 100.0 AGACGTTGAA ........................ ACAAGGAGGA ========== ====== ====== ====== ========== ======================== 25 24 41 CTTTCAATTCCATTATGGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2249,1435] Score: 0/0.18 # # Final direction: R [0.68,4.5 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2677492 24 100.0 45 CATATAGTTA ........................ AGAGCTTGATTTAGAAGGAAAAATATGGTTGTATAATATAAAATG 2677561 24 100.0 42 ATATAAAATG ........................ AGATAGCATAATCATAATTTAGATCTTTAGCATATTTCATTA 2677627 24 100.0 41 TATTTCATTA ........................ AGGGAAAGGTTCAGGTTTAAGGCTTATATTTCACCGCTGAA 2677692 24 100.0 42 CACCGCTGAA ........................ TCAAATTGGGACACAAACCATAACCCCAACAATTGAAGATAA 2677758 24 100.0 45 TTGAAGATAA ........................ TTAAGTAGATATTCTGCCGCAAAATTCCTATGACAATAATGTTTT 2677827 24 100.0 41 ATAATGTTTT ........................ TAATTTTGAGGGCGAAAATCGTAGGGGATGAAAGATATACG 2677892 24 100.0 37 AAGATATACG ........................ TTAAAATATAAAGACGTATTAAAGCTAGACGGGAAGA 2677953 24 100.0 42 GACGGGAAGA ........................ TGCCAATAACTATGAAATCAAGATATTTGACAGATGGATAAA 2678019 24 100.0 GATGGATAAA ........................ TGCAGATTTTT ========== ====== ====== ====== ========== ======================== 9 24 41 CTTTCAATTCCATTATGGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3879,842] Score: 0.18/0.18 # # Final direction: R [0.18,4.77 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2684986 24 100.0 43 NNNNNNNNNN ...C.....T...CG....A.... CTTACACTACTGCGACTTAGGCTAATGACGTTAATGCTCTAAG 2685053 24 100.0 40 NNNNNNNNNN ..............G......... GGGACAATATACTATTTACAAATGCCACTAGCATTGATTT 2685117 24 100.0 42 NNNNNNNNNN ........................ ATTTTCAATTACTAGTACAGCACATAGTGACGGAAATTATAC 2685183 24 100.0 37 NNNNNNNNNN ........................ GTAAAAATCCCGAGATAAAGCCTATCATTATCAAATT 2685244 24 100.0 42 NNNNNNNNNN ........................ GTTGAATATTAATGGTAATGAAAATGCTATGTATGCAGTAAG 2685310 24 100.0 39 NNNNNNNNNN ........................ TCCTTATCCTAGTGACAAGAATGCTCTTTATATAGTAAG 2685373 24 100.0 42 NNNNNNNNNN ........................ AACATGCTTATAGATTTGGTTGAACTTATATGGTAACTGCGA 2685439 24 100.0 42 NNNNNNNNNN ........................ TAGTGTTAGTTGTTATAGTACTCGTAGCAGATATTGTTGCTG 2685505 24 100.0 42 NNNNNNNNNN ........................ TGTTCCTTTGACTTCATCGATTAACAAACCGCTATGATCTAA 2685571 24 100.0 50 NNNNNNNNNN ........................ TAAAGAAAGAAAAGAAGTACAAGGATTTTGCAGTATTACCATTTAATAAT 2685645 24 100.0 39 NNNNNNNNNN T..CT......T.C.G.T.....A GGGAAGTACAAGGATTTTGCAGTATTACCATTTAATAAT 2685708 24 100.0 32 NNNNNNNNNN T..CT......T.C.G.T.....A GGGAAGTACAAGGATTTTGCAGTATTGGAAGA 2685764 24 100.0 47 NNNNNNNNNN ........................ TGAGGGTGGACTTCCCCGTGTTCGATTCGCCGTATAATATTAAATAT 2685835 24 100.0 40 NNNNNNNNNN ........................ AGTTAGTCCCCGATTCAAAAGTCGTTGAGGAGCTACTTCG 2685899 24 100.0 44 NNNNNNNNNN ........................ TCACCAAAAAGGATCCAACCACCATCATAATCCTCAGAATCTGT 2685967 24 100.0 40 NNNNNNNNNN ........................ CTTTAACACTTTTTTGTTTTATCATACACCTCACCCTATT 2686031 24 100.0 41 NNNNNNNNNN ........................ CGAATCTTTTATTCGTGTCAAAAACCGTGCCGTCTAGGTCA 2686096 24 100.0 42 NNNNNNNNNN ........................ TAAATATAGGAATATATCCTAACGTCTACGTTCCCCTCCGTA 2686162 24 100.0 40 NNNNNNNNNN ........................ ACGGGACTTTCTGGGCAACGACACGTTTTGGTTCAGAACG 2686226 24 100.0 38 NNNNNNNNNN ........................ TTGGGTATGTGTTGAAGTACAGATACGGGTTTGGGGTT 2686288 24 100.0 40 NNNNNNNNNN ........................ CAAATTTTCCATAAGAACTATTCAACATCAGTTTAGCTAA 2686352 24 100.0 41 NNNNNNNNNN ........................ AAAAATACGCTATCAAATTGCCTAAGCGTCTCAATTACATT 2686417 24 100.0 40 NNNNNNNNNN ........................ TTCTTAACGAAACTGAATCCAGGGGAACAGTTACGTTTAT 2686481 24 100.0 40 NNNNNNNNNN ........................ CGTTATATGAAGAATAAGTACTATGTTGCGACTGTAAAAC 2686545 24 100.0 40 NNNNNNNNNN ........................ TCCCTCTAGTCCACTCAAACGTCCATAATGCTGCAATTAA 2686609 24 100.0 40 NNNNNNNNNN ........................ CAGGAGGTTTAGGTAAGTTAGTTAAGTCAGTTAGTAGGTA 2686673 24 100.0 42 NNNNNNNNNN ........................ TAAAAAAGCTCTACGTAACTGAAAGGGGCTTAATAATTGCTA 2686739 24 100.0 41 NNNNNNNNNN ........................ CAATGAGTGCTACTGTGCCGTTTGTTGATGATATATCTAGT 2686804 24 100.0 43 NNNNNNNNNN ........................ AATCCCTTGGCGGGAATTTTGGAAACCTAGAAGATTCAAGAAT 2686871 24 100.0 42 NNNNNNNNNN ........................ AATATTTTTCTTATCTGGCAATACTTAAGAAATTGAGAATAT 2686937 24 100.0 40 NNNNNNNNNN .....................TCA CATCTGAAAACGTTTGCTGGTGTCAAAGGTCGTTCCGTCA 2687001 24 100.0 40 NNNNNNNNNN ........................ TCTATTGCGTGATCCACATAATCTCTAATCTCATATAGCA 2687065 24 100.0 42 NNNNNNNNNN ........................ TTTATTTTTCTAAGCGTTTAAAATTATTTCGTTATTTATAGA 2687131 24 100.0 41 NNNNNNNNNN ........................ ACAGGCGGAGGCTTTAGCTTTGGAGGCGGGAAAGGAGGAAG 2687196 24 100.0 40 NNNNNNNNNN ........................ AAAATGTAAAAGTATATGACATCTTTGTCACACCAGGTGA 2687260 24 100.0 39 NNNNNNNNNN ........................ TTTTTTTGAACTCATTATAAATAGAGACTGGTACCAAAA 2687323 24 100.0 40 NNNNNNNNNN ........................ TAGAAAGTTCTAGTTATGAAATAACAGAGGTGTTGAAAAA 2687387 24 100.0 39 NNNNNNNNNN ........................ TTACTCAACTAAAGAGAACGTGGATAAGGTAATAATAAA 2687450 24 100.0 40 NNNNNNNNNN ........................ TTAGGAGTGGGCTTTTAAATTTCTATCCTTCAATTTCTGA 2687514 24 100.0 41 NNNNNNNNNN ........................ CCGTATTGATTTGCTGTCTCCTCCTCCCTTCACCGATACCG 2687579 24 100.0 42 NNNNNNNNNN ........................ TTTGTAATGCGTATATCGTACATAGAGCAAAAATGGAGAAAC 2687645 24 100.0 41 NNNNNNNNNN ........................ TTAGCGTGATAGACGATATCTTAAGTGAGGCTAGGAAGTAC 2687710 24 100.0 41 NNNNNNNNNN ........................ TGTATACGGAAATATTGAAGTTACAAATGGCGTAACAAAAC 2687775 24 100.0 36 NNNNNNNNNN ........................ TTATACTCTTTGAAACACATGGCATGTGAAAAAATT 2687835 24 100.0 39 NNNNNNNNNN ........................ AGAAATATGAAGAACTGTTAAACGAGTATAACGGGTTAA 2687898 24 100.0 39 NNNNNNNNNN ........................ GGAATGTGGCACCACGCTGAGATTATCATCAACAATAAT 2687961 24 100.0 43 NNNNNNNNNN ........................ TGGGATATTACATAGTTCAATAATAAATTAAGGGAAAAACTAT 2688028 24 100.0 41 NNNNNNNNNN ........................ CGGTCTGGATTAACATTTAGTGGTTGTATGAAAATAAAAAA 2688093 24 100.0 43 NNNNNNNNNN ........................ TTTCTATCAAGTCAAGTACTGACAAATCAACTACAAATCTGAA 2688160 24 100.0 41 NNNNNNNNNN ........................ ATTATAGTAATTGTTTTAGTAATCATTTTGATAGCTGTGAT 2688225 24 100.0 40 NNNNNNNNNN ........................ CCTATAGGTGTTACAAAATTCAGCCCCTTCTGATGGGGAT 2688289 24 100.0 40 NNNNNNNNNN ........................ CTTGATCTACTACCAGTTCATTTATTCTCTCAATAAAGAA 2688353 24 100.0 41 NNNNNNNNNN ........................ AAATCGTTCTTCTACGTATACGACAGTTTGGGACTTCATAG 2688418 24 100.0 43 NNNNNNNNNN ........................ TATACTTCCTCCCCGTCAGAAGAAAATTTAGACGGGGGGATAG 2688485 24 100.0 43 NNNNNNNNNN ........................ AAAATCGTTGTAATAGACGAGGCACATAGAATACTCGCTAGAA 2688552 24 100.0 42 NNNNNNNNNN ........................ AGGAAGACTGGGGAAATATTGATTCTGCAGGGGAGGACAAAG 2688618 24 100.0 40 NNNNNNNNNN ........................ ATACCGTCACGTAGTAAACGTGGCTTAAAACATTACACTA 2688682 24 100.0 40 NNNNNNNNNN ........................ ATGTCAGTATTTTGAACTCTGTCCTTAAGGTAACTTTGTC 2688746 24 100.0 39 NNNNNNNNNN ........................ GGTTTCCTACTTTTACACCATCTTTATATAAAGATATAA 2688809 24 100.0 37 NNNNNNNNNN ........................ CACGACCTGGTCTTTTTACCGCATCACTCAGGCTTTT 2688870 24 100.0 40 NNNNNNNNNN ........................ TTAGAGAAGGAAAGAAAATCTATGTAGAATTAACAGAGAA 2688934 24 100.0 42 NNNNNNNNNN ........................ GGAACGTGGACATTAGGATATACAGTTACATCTATTTCTTTC 2689000 24 100.0 39 NNNNNNNNNN ........................ ACACGCAGATATTATGCTTCTTACAGACGTGGTCAAGAG 2689063 24 100.0 37 NNNNNNNNNN ........................ CTATCACTCAACGGAATATCGGAATATGAATCAAGAG 2689124 24 100.0 43 NNNNNNNNNN ........................ TGGGAATGTTTCGTAGACGTCGTAACGTCTGACAAAGTGAGAT 2689191 24 100.0 42 NNNNNNNNNN ........................ AACTTATGCAAATCTCATCTATGACGCGAGAAATAATATGTA 2689257 24 100.0 43 NNNNNNNNNN ........................ AGGAGTGGAAATATAGTTTTGACTCAGTGAGGGTAAATGTGTA 2689324 24 100.0 53 NNNNNNNNNN ........................ TGATTGTTTTTATATTCACTTGGTATAAAAGAATATTGTACAAATTTCTCAAT 2689401 24 100.0 37 NNNNNNNNNN ........................ TATCGCTGGAATAGTAGGAAATATTCTCTCACTTTAT 2689462 24 100.0 46 NNNNNNNNNN ........................ CAAAAAATTAGTTAGAAAAAACTGACTTAAGAAATAGTCTTATTAA 2689532 24 100.0 44 NNNNNNNNNN ........................ AGTGTTAGATAGACAGATCGGTAGTAAAGTGCCTGTCGTATTCG 2689600 24 100.0 45 NNNNNNNNNN ........................ TTATTGATGCTTTCGCCATTGAACCTATAGACGAAAAGAAGATCA 2689669 24 100.0 44 NNNNNNNNNN ........................ ATACATAATACATAATAATCAGAAAAAGGGCAAAAGAGCATGAT 2689737 24 100.0 42 NNNNNNNNNN ........................ TGGAGATAGTTGAGAGTTATGATTCTGATACTTATGCTTACC 2689803 24 100.0 40 NNNNNNNNNN ........................ GTAGCTGGATTTCTAGGGTACTATTTTGCACCAAGCAATA 2689867 24 100.0 40 NNNNNNNNNN ........................ TTTCTCTTCAGAAGAACAGAATTGAAGTGAAAGCGAAAAG 2689931 24 100.0 42 NNNNNNNNNN ........................ AAACATTTTCTGTAACAATTGTATAACAATTGGTTATAATGA 2689997 24 100.0 41 NNNNNNNNNN ........................ TTCAGCTTATCTGAGTACTTCAAGAAAATATCGTTAAGCCT 2690062 24 100.0 45 NNNNNNNNNN ........................ TGAATATAAAATCCAATATCTTAAAGTTGTAGTTATAAATCATGT 2690131 24 100.0 42 NNNNNNNNNN ........................ TGAAAAACTGAAAAATGACGGTTGGGAAGTAATTTGGACTAT 2690197 24 100.0 40 NNNNNNNNNN ........................ AAGGAATTCTGCAGAAATTTAGACGAACTTAATCAAGTAT 2690261 24 100.0 40 NNNNNNNNNN ........................ CTATCTTCTCTAAAGGACCCACGTAAAGATACCTTAACTT 2690325 24 100.0 37 NNNNNNNNNN ........................ TGGAAAAAAGTCTTATAATAATCATCTTTATAGTAGT 2690386 24 100.0 41 NNNNNNNNNN ........................ CTGTTCATAAAAGAAGTAGTGATGGCAAGAAATCCTATACT 2690451 24 100.0 42 NNNNNNNNNN ........................ AACGGGTTAAGCCCAACAATGTTCATAACACCAGCAAATGTA 2690517 24 100.0 41 NNNNNNNNNN ........................ ATCCAGGCTTATATGCGAGGTGGCATTTAGAGGGGTTAAAA 2690582 24 100.0 40 NNNNNNNNNN ........................ TCGCTGTAATAGGTGCTAGGATACTTACTAGACAACTTGG 2690646 24 100.0 39 NNNNNNNNNN ........................ TAAATGCTCAAATACTTAATCTCTCAGCGTGGCCTAAAT 2690709 24 100.0 39 NNNNNNNNNN ........................ ACAACCAAAATGATCTATTTACCAATGTGATACTCATAA 2690772 24 100.0 44 NNNNNNNNNN ........................ TAATTATCATCAGAGAAAATTAGCAGAAATGAATGAGAGAAACG 2690840 24 100.0 42 NNNNNNNNNN ........................ TGTTCCCTTGACTTCATCAATTAACAAACCGCTATGGTCAAG 2690906 24 100.0 41 NNNNNNNNNN ........................ TCAAACACGTCACCCTCAAGGTATGCTGGTGATTGTAATGA 2690971 24 100.0 45 NNNNNNNNNN ........................ GAGCGGGTACACTAAGAGGGAAATAATAGCAGTATTGAGAAAGCA 2691040 24 100.0 43 NNNNNNNNNN ........................ TTAGGTACAGTGTCTCAATTGATAATCCCGCTTATTTTAGACT 2691107 24 100.0 40 NNNNNNNNNN ........................ ATCTGACAAAAAAAGAGAGATATTCTATGATATTTGTTGT 2691171 24 100.0 38 NNNNNNNNNN ........................ TCTATTTTATCGTTTGTCAAAACTTCATCGAGTGATAT 2691233 24 100.0 39 NNNNNNNNNN ........................ ATATCTAATGTGTTGCTTTAGTGATACTGACGACGAAAA 2691296 24 100.0 42 NNNNNNNNNN ........................ TCTATACCCGGAAGAGTTTGCTAAGATTGACGAATTTTGCAG 2691362 24 100.0 39 NNNNNNNNNN ........................ GTATATCAGAAAGTTCTTTGCGACACAAATGCTAAGTTT 2691425 24 100.0 41 NNNNNNNNNN ........................ TTAATTCCATTTAAGCAACAAATTCAAACGTTTCTAGAGTC 2691490 24 100.0 40 NNNNNNNNNN ........................ GTTTAATTTTTTCTGACTGGAGACCGTCTAAGGATTATGT 2691554 24 100.0 39 NNNNNNNNNN ........................ AATAGCCTAATGAGGTGAGGGATATGAAGAAAAGGAGTT 2691617 24 100.0 44 NNNNNNNNNN ........................ TCGAGAGGTCTGTCGTCATAAGACGGGCACTCTCGGAATTCTTG 2691685 24 100.0 38 NNNNNNNNNN ........................ TCGTTAATATTTCAGCAGTTTCCGGGACAGTGTATTTG 2691747 24 100.0 43 NNNNNNNNNN ........................ TGAAAGAGCTGAAGGACTTAGATAGTTTAGTAAATATTGTTAA 2691814 24 100.0 39 NNNNNNNNNN ........................ ACGATCTCGTCATAGATTCCTCCACGTAATAATAAAAAG 2691877 24 100.0 41 NNNNNNNNNN ........................ CTGACCAGATGACACTTTCATTACCATCATCAAGAGCTGTT 2691942 24 100.0 42 NNNNNNNNNN ........................ CGCAAAACCGTAATAGATTTCGAACTTCCTCTTCTGCCCTTT 2692008 24 100.0 40 NNNNNNNNNN ........................ GAAATAGCTAAGTACTTTGATAGTTTCCCCTTCTTGCTCA 2692072 24 100.0 42 NNNNNNNNNN ........................ TGATAGGGCTTTACCTCAGCCATGATAAGTTACCTTATTTTT 2692138 24 100.0 41 NNNNNNNNNN ........................ GGTGGAGGAATATCTGGAAGCACTCTATTCTGGGTTGCAGT 2692203 24 100.0 41 NNNNNNNNNN ........................ CCGGTTCTAGCAAACCCTCTACCGCTAACGTTTCCAAGAAA 2692268 24 100.0 39 NNNNNNNNNN ........................ ATAACACAGTTGTTGAGGAGTGCTGCTGAATTGGAAAGC 2692331 24 100.0 43 NNNNNNNNNN ........................ CAGAGGTAGGAAGTAAAAAAAAGATATTCAAAATTACAGAAAA 2692398 24 100.0 41 NNNNNNNNNN ........................ CCCAGCGAAAAGCCTAGACACTCCTCGAACTGCTCTACCAA 2692463 24 100.0 38 NNNNNNNNNN ........................ TCAGCCTCCTCAGGTTTTATAACAATTTTGGTTGGCCC 2692525 24 100.0 39 NNNNNNNNNN ........................ TTATGTCAGTAGTCTTGACATTAAAATTAAGATGTATGA 2692588 24 100.0 40 NNNNNNNNNN ........................ CACCAGTTCCGGAGCTAGTTGACGTTTGACCGCCAGTTCC 2692652 24 100.0 40 NNNNNNNNNN ........................ CTTTCTTGAGGTAGACAAACTCTGAAATATTTTTAAACTT 2692716 24 100.0 38 NNNNNNNNNN ........................ CTACAGAAAGCTAAGATGATAAGGGCCTACCTTATTGT 2692778 24 100.0 44 NNNNNNNNNN ........................ AATATCATATTAGGGGATTTTCCCTAACTCCTCTCGTAAAAGTT 2692846 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 122 24 40 CTTTCAATTCCATTAAGGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [32,1889] Score: 0.18/0.18 # # Final direction: R [0,5.73 Confidence: HIGH] >NC_003197 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3076672 30 96.7 31 GAACGCCCCT .............................G CGAAATAGTGGGGAAAAACCCCTGGTTAACC 3076733 30 96.7 31 CTGGTTAACC .......................A...... AGGCCTTGATACCATCGCTCGCACCTCGTCA 3076794 30 100.0 31 CACCTCGTCA .............................. CTTTTGATTTTGCTGCGATGTTATAACCAGA 3076855 30 100.0 TATAACCAGA .............................. ATCCACATAT ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [77,1361] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_003143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1773655 28 100.0 32 ATTATCTTAC ............................ ATGTTCGACGATTTATTTTATTTGTATTTCAG 1773715 28 100.0 32 TGTATTTCAG ............................ ATTTATTAAAGATGCTGACAAAAAGAACTTAA 1773775 28 100.0 AAGAACTTAA ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC ========== ====== ====== ====== ========== ============================ 3 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [496,96] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_003197 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3076978 28 100.0 28 GAAACGGCTC ............................ GATCGAGTAACGTGCGCTGGAACGCGTC 3077034 28 50.0 33 GGAACGCGTC --------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATTC 3077095 28 100.0 34 CGCCTTATTC ............................ GCACCTCGAAACGGTTTTAAAACACTACCGTTTC 3077157 28 100.0 33 CTACCGTTTC ............................ TGGACCGATGGGGCCAACATCGCCGAACGTGGC 3077218 28 100.0 33 CGAACGTGGC ............................ GTTACGTTCGGTAAATGGAAAGCGGCGAATATC 3077279 28 100.0 33 GGCGAATATC ............................ CCAGAAAGTGCCGGTAGTGCCTGATGAACGACC 3077340 28 100.0 33 ATGAACGACC ............................ CGCGCCCACTTCCGTAAAATACAGATAATCCAC 3077401 28 100.0 33 GATAATCCAC ............................ GGTAATTTCTCATCTAACAGCCTGTACGCCTCA 3077462 28 100.0 33 GTACGCCTCA ............................ GAATCTAATGCAACAGATGAATAAACACGTAAC 3077523 28 100.0 33 AACACGTAAC ............................ TCTTTATCGTCAATGCGAAATTTTCCGCGACGC 3077584 28 100.0 33 TCCGCGACGC ............................ TCCCATTCACCAACAACAATATCGCCCTGCAAC 3077645 28 100.0 33 GCCCTGCAAC ............................ CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGC 3077706 28 100.0 33 CGTCAGCGGC ............................ TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACGC 3077767 28 100.0 33 GTAGTGACGC ............................ ACTTCCTTCAGTCTTAACGATAATCCGCAACGC 3077828 28 100.0 34 TCCGCAACGC ............................ GCAAAATAGCGATGAGCTGGCTACGCCCACTGGC 3077890 28 100.0 33 GCCCACTGGC ............................ GAGGGGATAGGAGTTACGATCCAGCCTGGTTGC 3077951 28 100.0 33 GCCTGGTTGC ............................ GTGGTTGCAGACCAATCAGCCCGCCAGCGGTTC 3078012 28 100.0 33 CCAGCGGTTC ............................ GTGGTTGCAGACCAATCAGCCCGCCAGCGGTTC 3078073 28 100.0 33 CCAGCGGTTC ............................ CAGCACGAAAAATTATTTACTGTCGTTGCTCAC 3078134 28 100.0 CGTTGCTCAC ............................ ACTAAAACTA ========== ====== ====== ====== ========== ============================ 20 28 32 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [383,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_003143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2895283 28 100.0 33 TTATCTTACT ............................ CCGGCGGTGATGGCAATTCTACGTGGGTTCGTT 2895344 28 100.0 33 TGGGTTCGTT ............................ CTGATACAATCATCCTATTTGTCCTATCCAGAA 2895405 28 100.0 32 CTATCCAGAA ............................ GACAAGAACCGAATCTTTCGCCGTGCCGTAAA 2895465 28 100.0 33 GTGCCGTAAA ............................ CCGAAATCATCAGATGTAATTAAGATTTTTGCT 2895526 28 100.0 GATTTTTGCT ............................ AGACTGATGCAAGATGGCGGTATGCGTACAGA ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [356,65] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 32702 25 100.0 38 NNNNNNNNNN ......................... TTCCTAACTTCTTTCGTAAATGTTAGGAAAAGATTTAA 32765 25 100.0 40 NNNNNNNNNN ......................... ATTAGCATCAACAATTTTCGATGAAGGAGTAGACATACCT 32830 25 100.0 37 NNNNNNNNNN ......................... ACACTAATAATATAGGATTTGTCACGGAAGATGATAT 32892 25 100.0 36 NNNNNNNNNN ......................... ACTTTATCTTTATACCGTAACTCTATACTGGAGACT 32953 25 100.0 40 NNNNNNNNNN ......................... AAGATAGATGACAAGATAACAATAAATTTCATACAAATAG 33018 25 100.0 38 NNNNNNNNNN ......................... CGTAATTAAGCCCGATTTGTACACCACGCCGTGGGTTC 33081 25 100.0 38 NNNNNNNNNN ......................... TGATTGATCACAATGAGAAGACTGTAAAGCTGATAAAC 33144 25 100.0 37 NNNNNNNNNN ......................... TGTTGAGGCATAAATTAATCTATCCTTAATGAAAAAT 33206 25 100.0 40 NNNNNNNNNN ......................... TTCTTCCTCAGCCTCCATTTTGTTTATGATTTGTAGTGCC 33271 25 100.0 40 NNNNNNNNNN ......................... TTCAATAATCTCTATCTTTCCAAAATCTGTAAATGAAGAC 33336 25 100.0 40 NNNNNNNNNN ......................... TATGGGAATGTGAACAGCTTATCCTCATTTTATCCCCAAT 33401 25 100.0 40 NNNNNNNNNN ......................... TTTCTGTAATCTCCCTGCTTTCTTAACGTTATCTTATCAA 33466 25 100.0 39 NNNNNNNNNN ......................... ATGAACTGTTTGCCCTACTTGATAGCCACTGATTCAATT 33530 25 100.0 37 NNNNNNNNNN ......................... TCGCAAAGCGAAAAATTGAAAATTTTTACAATCAAAA 33592 25 100.0 43 NNNNNNNNNN ......................... GTAAAAATGATGTTCAATAAGTTGTATGGAGATGAAAATTCAC 33660 25 100.0 40 NNNNNNNNNN ......................... GAGATTATAGCCGAGATAATAGAAGAATCAAAGCCAAATT 33725 25 100.0 40 NNNNNNNNNN ......................... GTATACTCATTCATAATCTTTTCCATTAAAGCCAAAATAC 33790 25 100.0 43 NNNNNNNNNN ......................... GTAAGAGTGTTGAAATATTCATCTACAACTAAGTAATCAAAAT 33858 25 100.0 41 NNNNNNNNNN ......................... TATTCATTAATTCAGACAGAAGAGAAGAATTTTGATTATTC 33924 25 100.0 37 NNNNNNNNNN ......................... CTCACTCTCTTGTAATTTTTCTAGAGCGATTCTAAAT 33986 25 100.0 40 NNNNNNNNNN ......................... CAGTATATTTGTTTAAGTTTTCTTGCATATTTTGTCGCTT 34051 25 100.0 38 NNNNNNNNNN ......................... AATATATTGTTGATATTGAGGAAATTGGAACAAATACA 34114 25 100.0 40 NNNNNNNNNN ......................... ATATAACTTTACACACGTTACACAATAAACCATGAACCAA 34179 25 100.0 39 NNNNNNNNNN ......................... TTTATTTTTATTTTTTCCGTTAGGGGTGGGGGGATGTTA 34243 25 100.0 40 NNNNNNNNNN ......................... GGTACATCTTGGCTTACTATTTTATAGGCTGTCTTCTCTG 34308 25 100.0 36 NNNNNNNNNN ......................... GAAATCCTAAAGGCGGTTCAAAATCCTTAGCGTAGT 34369 25 100.0 38 NNNNNNNNNN ......................... TTTAATTTTCTTAAATAGTCAAAAAAAGAACTACTTCT 34432 25 100.0 39 NNNNNNNNNN ......................... TATTACTTTGTCACATGCGTAATACTAAGATTGTTATTA 34496 25 100.0 39 NNNNNNNNNN ......................... GAAGTAGTTAGTAAATGCTACTCGACGTGTGAAAATATA 34560 25 100.0 40 NNNNNNNNNN ......................... CTAAAAAGAGACTTTTAACTGGGGAGTTTAATCACCGTCG 34625 25 100.0 40 NNNNNNNNNN ......................... TAAAGCCGGAATTGTTACTGTACAGTTTTCTTTCTCAACT 34690 25 100.0 40 NNNNNNNNNN ......................... CTGTAAACTAGAGTTGAAATAACACTTCTATCAAGAACAA 34755 25 100.0 39 NNNNNNNNNN ......................... TTTGGCTATTTCGATAGCTTGATTTAAGTCACTAATAGA 34819 25 100.0 37 NNNNNNNNNN ......................... TTGGAATTTTGGCTCACCCCCTTTAAGTATTCATCTA 34881 25 100.0 35 NNNNNNNNNN ......................... TTAACGGAATCGGTCTAGGTGATTTGCCATTTAAC 34941 25 100.0 40 NNNNNNNNNN ......................... AGGAGGAGCTGAACGGTAACCCTATGGTTGACAGTGAGTT 35006 25 100.0 35 NNNNNNNNNN ......................... CTTTTCTTTTCTGAGTGTGGACAACAATTTCTAAA 35066 25 100.0 38 NNNNNNNNNN ......................... TCTTCCTTTTGTGGCTAATTGGTCAAATGATGTTATCA 35129 25 100.0 39 NNNNNNNNNN ......................... TAATATATCAAATATCTTTTGAATTGTTGAACAAGTTCT 35193 25 100.0 39 NNNNNNNNNN ......................... TTCTACTTATCAAACTAGTAGGTCTAACATATTACGTCA 35257 25 100.0 41 NNNNNNNNNN ......................... TAATAAGAAGAAAATTGCTAAATGTTTTGAATCATAATGCT 35323 25 100.0 37 NNNNNNNNNN ......................... AAGAAACCTTCAGAAATCCAAATTGAGATATGGTCAA 35385 25 100.0 41 NNNNNNNNNN ......................... ATCACTAAATCATTAACTCTGACTTTGAAAACCATCTCAGA 35451 25 100.0 38 NNNNNNNNNN ......................... AGCTTTCTTAATTAATCCACATGAACATGTCTTACTAA 35514 25 100.0 40 NNNNNNNNNN ......................... GCAAAGTAGTACCTTCGGTTTGTCTTATCCCGCTTAATAC 35579 25 100.0 41 NNNNNNNNNN ......................... AACTCCCTAACGAACTCTATCTTATCTTGCTTATCCAATAA 35645 25 100.0 42 NNNNNNNNNN ......................... AAGATCCACTAACAGTGCTAAAGCCGATCATTGGTAACCGCA 35712 25 100.0 39 NNNNNNNNNN ......................... TTTGAGTTACTGTCAAAGATTAGCAATTTTTGTTTTGTT 35776 25 100.0 37 NNNNNNNNNN ......................... TTTCTTAACTACAGTGAGTGGAAATATATCTTTAGGA 35838 25 100.0 37 NNNNNNNNNN ......................... GATCTTCATGACTATATTAAGTCTTTGGCTTTAGAAG 35900 25 100.0 38 NNNNNNNNNN ......................... TTTAACCCCTCTTCAGTATCAAACAAGATTATCTTGTA 35963 25 100.0 40 NNNNNNNNNN ......................... TTATGAAGAATAAGGATAACTTTGTTCTTGACAGAAGTGT 36028 25 100.0 35 NNNNNNNNNN ......................... ACGATTACTGGACAGGGTGGGATGGTGAAATTTAT 36088 25 100.0 42 NNNNNNNNNN ......................... CGTACTAGTAGTAGCTCTTCTCTCACTATTTGCAATAAATTT 36155 25 100.0 39 NNNNNNNNNN ......................... CTGAATTTCACCCATGAATATTCTACTCCTGCATAACTC 36219 25 100.0 40 NNNNNNNNNN ......................... GGTAAGCCTTTTCGATTGGTACATTTAATTTACTGCCGTC 36284 25 100.0 38 NNNNNNNNNN ......................... AGCAGAATCTATAGGGAATTCACTTGGAATTAATACTG 36347 25 100.0 39 NNNNNNNNNN ......................... TTAACTATCTCATTTTCCTTCGGCAATTCGGTCTGTTTT 36411 25 100.0 41 NNNNNNNNNN .........A............... TTTTCACTTTCAGCAATGACTAATGCTATACCTTCATTATC 36477 25 100.0 38 NNNNNNNNNN ......................... ATCTTATCTAAATCTATTGCTGAAGAAAAAGACAAAAG 36540 25 100.0 38 NNNNNNNNNN .........A............... ACAGAACACTCCTCATTTTCATCTTTATGTACACTCCA 36603 25 100.0 37 NNNNNNNNNN .........A............... ATCTTTGCTCAAACTGGAAACTTTGCAAATGAAGTTT 36665 25 100.0 44 NNNNNNNNNN .........A............... CTTTGGGGTTATTTAAAGCTTTCGGAGAAAGATATTAAAAAACT 36734 25 100.0 37 NNNNNNNNNN .........A............... TTTTTTCCTTCTATCCTGTATGATATTCTTTCATCAT 36796 25 100.0 37 NNNNNNNNNN .........A............... GGCATCTGAAATATTCTTTAAGTGAAGATGATAAAGA 36858 25 100.0 39 NNNNNNNNNN .........A............... TTTTATATACGCTCTGTAGTCTGTTTTAACATTAATATC 36922 25 100.0 39 NNNNNNNNNN .........A............... GGTGTCTCATCACCAATACAAATCGCTGAAGATATTGGT 36986 25 100.0 38 NNNNNNNNNN .........A............... TTTATAGATCTAACTAATGTTCGTATTAATTCTCTATT 37049 25 100.0 41 NNNNNNNNNN .........A............... GCAATGAGAGGCAGTGGAAGAGAACCAATTATAACGTTATA 37115 25 100.0 40 NNNNNNNNNN .........A............... TACAGGTGATGCATGACTGGGGATCGTGACCCCAGTCGCA 37180 25 100.0 34 NNNNNNNNNN .........A............... TTTTATGCAAACACACCTGTGATTATCGGAACAA 37239 25 100.0 40 NNNNNNNNNN .........A............... GGTAGGTTTATGACTTGAGGTACAGCATATGTGTATGCAT 37304 25 100.0 39 NNNNNNNNNN .........A............... GTGATATTGGCGGGTAGTTGACCAGTTGAGGTAAACGCT 37368 25 100.0 39 NNNNNNNNNN .........A............... GTGATACTTCAAAAGTAATGTAATTCTGAACGATATCAC 37432 25 100.0 39 NNNNNNNNNN .........A............... TTAACCACAGCTGTGGTATCAAACTTGTTGTGGGGCAAT 37496 25 100.0 37 NNNNNNNNNN .........A............... TTTCCGTTTGCTTTACGTAGAGAACGCCCTATACGTT 37558 25 100.0 40 NNNNNNNNNN .........A............... ATAGACTTTTCACCATTGCTGGTAAAGAAAATGTATATTA 37623 25 100.0 38 NNNNNNNNNN .........A............... TTAGATCTTTTGTAGGAATAAGAATTGCCCATTTCTTA 37686 25 100.0 37 NNNNNNNNNN .........A............... TTAGGGTCTGGTACCAGTTCCTTGAACTCTTCGAACT 37748 25 100.0 39 NNNNNNNNNN .........A............... GCCTCAAGCTTAGCGAGCTCCTCCCCATATTTACCGACG 37812 25 100.0 40 NNNNNNNNNN .........A............... TATATGTTAATACAAAATAGTTGTTACTAAAATCAAAATG 37877 25 100.0 40 NNNNNNNNNN .........A............... ATTTTCTACGAGATAATTTATTGTTGAGTACACCCTCATA 37942 25 100.0 37 NNNNNNNNNN .........A............... ATGAAAACGGACAGCCCATGATAGTCAATGACCCAAT 38004 25 100.0 40 NNNNNNNNNN .........A............... TTTTGTGGTGACATTATTTTAATTCCCCACGTACAATTTT 38069 25 100.0 40 NNNNNNNNNN .........A............... AGTTTCTATACCAGCTAACTCTTCAATTACTATTTATATG 38134 25 100.0 39 NNNNNNNNNN .........A............... TTTTATGTTGAAGGGGTTTAATATGCCACAGGAAGAGCA 38198 25 100.0 39 NNNNNNNNNN .........A............... TAATATATGCACTAGCTGTAATGAATGATATTCCAGTTT 38262 25 100.0 39 NNNNNNNNNN .........A............... TTTTTTCTTCTAAACTAATCATTTTTCACCCCTAATACT 38326 25 100.0 44 NNNNNNNNNN .........A............... GAAAGTTCCCATGGTCTGGAGATTCAAAATGAATGCTCATTAGT 38395 25 100.0 37 NNNNNNNNNN .........A............... ATTCCATTAAAATTTCCTTTAAATTTACATGATCTAG 38457 25 100.0 34 NNNNNNNNNN .........A............... GGTATTTAGGCGTTTCAACACAACATGAGGTTGA 38516 25 100.0 39 NNNNNNNNNN .........A............... GTGTACCAGTCGTCACTGTTTTTATTTGCGTAGTGGTCT 38580 25 100.0 44 NNNNNNNNNN .........A............... ACCCTCACTAAAAAGACCTTAGGTAATCTCTCCATTTGTTTGAT 38649 25 100.0 40 NNNNNNNNNN .........A............... ACCTGAACATTTAAATTTTAACTATTAAGAATGGTACATC 38714 25 100.0 45 NNNNNNNNNN .........A............... TTATATAAACTATAACATCCACTGAATGTTAGTCCACTTCTTGAA 38784 25 100.0 39 NNNNNNNNNN .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38848 25 100.0 39 NNNNNNNNNN .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38912 25 100.0 39 NNNNNNNNNN .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38976 25 100.0 38 NNNNNNNNNN .........A............... GTAGAGGTCCTCTAGCGGACTTTGTTAGTAAAAATTTT 39039 25 100.0 38 NNNNNNNNNN .........A............... ATCATCCTCCTCATTGTCGATACTCCCTTTGTGAATTT 39102 25 100.0 36 NNNNNNNNNN .........A............... GATAACAAATATAGCTACTCAGGTTTATAATGCTGG 39163 25 100.0 40 NNNNNNNNNN .........A..........A.... GTTTAATGCTCTAGCTAATTTCATAGCATAACCTTGGTAA 39228 25 100.0 41 NNNNNNNNNN .........A............... TTAATATAACAACACTTATATATCTGTTACGCAAAAATTAG 39294 25 100.0 39 NNNNNNNNNN .........A............... AATGTTTGCTTTTATGACAGTAAATAAAAACATGTTCCT 39358 25 100.0 39 NNNNNNNNNN .........A............... TCAAGAATCTTTTGCAATACATCACCTGAGATCCCATAT 39422 25 100.0 40 NNNNNNNNNN .........A............... AATAAGATGGGATCTGAGGAGGAATGGGAGGAAGAGGAAT 39487 25 100.0 38 NNNNNNNNNN ......................... TTGTTTCTTCCCCCTATGTCTACTTATTATTTTTTCCC 39550 25 100.0 40 NNNNNNNNNN ......................... AAGTTAGGATCTAGCGGAATAAAAGTATACTCAAGTTTAT 39615 25 100.0 41 NNNNNNNNNN ......................... AAAGCACAGTCAATAACGTTATCTGGTATCATATTATCAAA 39681 25 100.0 39 NNNNNNNNNN ......................... CTTTCTCCTTCCCTCTGATCTCTCGCTGAATTGAAAAGA 39745 25 100.0 41 NNNNNNNNNN ......................... GTAAGTATTGATGCTAACATTGACTTCGCTGTCCCAGGGGC 39811 25 100.0 36 NNNNNNNNNN .......................G. AAGTATAATAACGATAGTACTAAAATTAATTGATCC 39872 25 100.0 1 NNNNNNNNNN .....T..T.............T.A NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 113 25 39 GATGAATCCCAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [317,58] Score: 0.18/0.18 # # Final direction: F [5.86,0.37 Confidence: HIGH] >NC_003197 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3094279 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3094340 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3094401 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3094462 29 100.0 32 NNNNNNNNNN ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3094523 29 100.0 32 NNNNNNNNNN ............................. TGCGTAATGGGCTACCTGAACTTCACATATCC 3094584 29 100.0 32 NNNNNNNNNN ...............A............T ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA 3094645 29 100.0 32 NNNNNNNNNN ............................. CGTATTCGTCACACAGCCCCGTCCAGAAATGA 3094706 29 100.0 32 NNNNNNNNNN ..................A.......... TAACGAACTGAATAAAATGTCAGAAAGTGACG 3094767 29 100.0 33 NNNNNNNNNN ...C......................... GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3094829 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCGCTATCGGGG 3094890 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3094951 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3095012 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3095073 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3095134 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3095195 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3095256 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3095317 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3095378 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3095439 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3095500 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3095561 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3095622 29 100.0 32 NNNNNNNNNN ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3095683 29 100.0 32 NNNNNNNNNN ............................. AGCGCCACATGGCCCACCGGCACCACCCGATC 3095744 29 100.0 32 NNNNNNNNNN ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3095805 29 100.0 32 NNNNNNNNNN ............................. TAATGGCCACAGTAAGTCAAACGGTTCTGGAA 3095866 29 100.0 32 NNNNNNNNNN ............................. GAGTCCGGGGGTTATATAGTTATTTAATGAGC 3095927 29 100.0 32 NNNNNNNNNN ............................. TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG 3095988 29 100.0 32 NNNNNNNNNN ............................. TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC 3096049 29 100.0 32 NNNNNNNNNN ............................. CTGAAAACGCATGGAATCCGGTATAAACAGTC 3096110 29 100.0 32 NNNNNNNNNN ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3096171 29 100.0 32 NNNNNNNNNN ............................. GAAACGTAAACAGGGTAAGATACAACTCTGCA 3096232 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 33 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_003198 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2926184 29 93.1 32 GGTGAAACGT --........................... GGACAGCAACCCGTGTCGGATATCAGACAGAT 2926245 29 100.0 32 TCAGACAGAT ............................. ACGCGAATCGCCAATCGCCGCCGCGTGAATTG 2926306 29 100.0 32 GCGTGAATTG ............................. CCACGATGTATGCCGACCGTGATTTTTACCGC 2926367 29 100.0 32 TTTTTACCGC ............................. AGATACGCCTTTACGTCGCCCTCTTTGGCGCG 2926428 29 100.0 84 CTTTGGCGCG ............................. TAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAT 2926541 29 100.0 GCGCGGGGAT ............................. TCTAAATCTA ========== ====== ====== ====== ========== ============================= 6 29 42 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,84] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_003112 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 46816 24 100.0 54 NNNNNNNNNN ........................ CGGCTTGTTCGGTTTCGGTTTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAACC 46894 24 100.0 44 NNNNNNNNNN ........................ TAGACCTTAGAACAACAGCAATATTCAAAGATTATAAAAGACCT 46962 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 3 24 49 GTCATTCCCGCGCAGGCGGGAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [1454,6046] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_003143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2769294 28 100.0 32 NNNNNNNNNN ...GATTAT................... TCAGGGGACTGGCGAACAATGTCTTTCATGAT 2769354 28 100.0 32 NNNNNNNNNN ............................ GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT 2769414 28 100.0 32 NNNNNNNNNN ..................A......... ATTATCTGAATGGCATTTTCTTTGGCGCAGAT 2769474 28 100.0 32 NNNNNNNNNN ............................ TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA 2769534 28 100.0 32 NNNNNNNNNN ............................ ATATTCTCGAGCGATAGCAATAGCCATTCCAC 2769594 28 100.0 32 NNNNNNNNNN ............................ TCGGTCAAACAAATTTAGGCGACGATTTAACA 2769654 28 100.0 32 NNNNNNNNNN ............................ AAAAAGAATTTGGGATTAAAGTTACCCATCAG 2769714 28 100.0 33 NNNNNNNNNN ............................ TCAATGCCTGAATCTCTGGCGTGATAGCTGCGG 2769775 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [355,336] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 8981430 26 96.2 35 GCACGCACTA ...........T.............. CACGCGGCTCAGGGCGGGGCCTGGAGGCGGGACTA 8981491 26 100.0 35 GGCGGGACTA .......................... CACGAAGTGAGCTTCCGGTTCGTGGTGGTGACGGC 8981552 26 100.0 35 TGGTGACGGC .......................... CACCATGGCGAAGTCGGCGCCTTCGGCTTCCTCGG 8981613 26 100.0 35 GCTTCCTCGG .......................... AACAACGGGTCGCGCCGCAACTGCTGGCCGACCGT 8981674 26 100.0 35 GGCCGACCGT .......................... AACTGGACCTCACCGCGCTGGATCCAGGGGAACGG 8981735 26 100.0 35 AGGGGAACGG .......................... AACCTCATCCTCGGCATCGACGAGAGCATCACCCA 8981796 26 100.0 35 GCATCACCCA .......................... AACTTCGTCGCTGTCAGCTCTGCCCGCAGCTCCGT 8981857 26 100.0 35 GCAGCTCCGT .......................... AACCTTCTCGTCTTGCAGGAACGCCAGCGCGCCGG 8981918 26 100.0 35 AGCGCGCCGG .......................... AACTGCGGCACCGAGACCTCGAAGCCGTCGGCGAG 8981979 26 100.0 35 CGTCGGCGAG .......................... AACTGGCCGTTGTCGTCCCTGGAGACGGAGCCCCA 8982040 26 100.0 35 CGGAGCCCCA .......................... AACGACCGCTTCCTCGTCGAGCAAGCCGTCCTGCA 8982101 26 100.0 35 CCGTCCTGCA .......................... AACGGGGTGTCCGGCCGCACGAGAAGCTGGTGCGT 8982162 26 100.0 35 GCTGGTGCGT .......................... AACTACTGGCACCAGAGCCTCGGCCGGAACCCGAA 8982223 26 100.0 35 GGAACCCGAA .......................... AACCCCTGGCACCTCCAGCGCATGGCCGCCCTCGA 8982284 26 100.0 35 CCGCCCTCGA .......................... AACTCCCGTTTCGGGCCCCGCCGTGTAGCTGCGAG 8982345 26 100.0 35 TAGCTGCGAG .......................... AACACGAAGACCTCCGCACCGAAGCCGCCCGCCAA 8982406 26 100.0 35 CGCCCGCCAA .......................... AACAGCCAGTCCATGCCGAAGCCTCGCGGGTCGAC 8982467 26 100.0 35 GCGGGTCGAC .......................... AACATGGGCCGCTGCTCCGTCGAGGGCTCGCAGAT 8982528 26 100.0 35 GCTCGCAGAT .......................... AACGACAGTGAGGGCTGGCTAGACAAGAACGGGGA 8982589 26 100.0 35 AGAACGGGGA .......................... AACAGCCAGTCCATGCCGAAGCCTCGCGGGTCGAC 8982650 26 100.0 35 GCGGGTCGAC .......................... AACGTCTCGGTAACGGGCGGAACCAATTTCATCGA 8982711 26 100.0 35 ATTTCATCGA .......................... AACGCCAGCCGCCACGCAAAGAAGGTCCGTGACGA 8982772 26 100.0 35 TCCGTGACGA .......................... AACCCCGCTTCAGCTCGCGAGGGGCTCGGACAGTG 8982833 26 100.0 35 TCGGACAGTG .......................... AACACCGACAGTGTGGTCTGGCCGAGACCTGAAGC 8982894 26 100.0 35 GACCTGAAGC .......................... AACGGTCGACAGGCGGTAGGTGTCGACGCCGAAGC 8982955 26 100.0 35 ACGCCGAAGC .......................... AACGCCAAGCTGGCCAGCGCCAAGGGCTTCGGTGG 8983016 26 100.0 35 GCTTCGGTGG .......................... AACCCGACGACGGCCGAGCTCAACGCGGGCAGCGA 8983077 26 100.0 35 CGGGCAGCGA .......................... AACCATCCATCCCGTGCACGGTCCTGCCGGTGGAC 8983138 26 100.0 35 GCCGGTGGAC .......................... AACCTGTACCGGACCTAGAGCAGCAGATCGCCCAG 8983199 26 100.0 GATCGCCCAG .......................... AACTCGATCTGCG ========== ====== ====== ====== ========== ========================== 30 26 35 CGACCCACCTCCGCTCGCGCGGAGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [389,787] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 8983321 29 100.0 32 TGATGGCCGT ............................. GTTCGCGATGCCGTGGACGTTGGTGGTGTCCG 8983382 29 100.0 32 GTGGTGTCCG ............................. AGGTGCTAAAGCGGTAGCATTCACGGGAGCTC 8983443 29 100.0 32 ACGGGAGCTC ............................. CGATGCCCGCATTCCAGCCTGCGTAGTACAGG 8983504 29 100.0 32 GTAGTACAGG ............................. CACCGAGCAACGCTTCTGCCAGTTACGGACCG 8983565 29 100.0 TTACGGACCG ............................. GCTCACGGCC ========== ====== ====== ====== ========== ============================= 5 29 32 CGACCCACCTCCGCTCGCGCGGAGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.20,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [33.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2280,418] Score: 0.18/0.18 # # Final direction: F [0.82,0.37 Confidence: MEDIUM] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 8993350 29 100.0 32 GTCAGGAAGG ............................. ACACGGCTGTTGAGCCGGACGGCGCCGAGACC 8993411 29 100.0 32 CGCCGAGACC ............................. GCCCGATCGAGGGCGGTGTGAGCATGAGTATC 8993472 29 100.0 32 CATGAGTATC ............................. ACGTCGTGGGACTGGTTGGCCGCCGCGTTGAA 8993533 29 100.0 32 CCGCGTTGAA ............................. CAGGTCGCCAGCCGCTGCCCGGTGTCGCAGTC 8993594 29 100.0 32 TGTCGCAGTC ............................. CCCCATGATGATTTGGCCAGGCACCCGAACCA 8993655 29 96.6 32 ACCCGAACCA ............................C CACTAACTCAAGACGCAATGATCACAATCGGA 8993716 29 100.0 32 CACAATCGGA ............................. GCGATGATGCCGGCGTCGACGGCGATGGGGAA 8993777 29 100.0 32 CGATGGGGAA ............................. TCGTTGAAGCTCATGCCGGTGCGCTTCTCCAG 8993838 29 100.0 32 GCTTCTCCAG ............................. CCGCCCGCGCCGCACTCATCCCCGACCAGGCG 8993899 29 100.0 32 CGACCAGGCG ............................. CCCGTGAGCAGCCGACGTTCGGTGACCGGGGG 8993960 29 100.0 32 TGACCGGGGG ............................. CCGTCGATGAGCGCCTAGCCTTGCTGGAACGA 8994021 29 100.0 32 GCTGGAACGA ............................. TCCATGCAGCACCGCGGCGACCGCCACCCCCC 8994082 29 100.0 32 GCCACCCCCC ............................. TTGGGGCAGTAGGTCAGCGAGGATGCCGAGCC 8994143 29 100.0 32 ATGCCGAGCC ............................. GAGAACTACGACGAGATGGCCAAGAAGACCGT 8994204 29 100.0 32 AGAAGACCGT ............................. AACGACACGGCCGCCTTCAGCCCGCCCCAGAC 8994265 29 100.0 32 CGCCCCAGAC ............................. CCGCCCGCACCACTGACGTGCGACGAGTGCGG 8994326 29 100.0 32 ACGAGTGCGG ............................. GCGCGCGGGTCCAACGTCCAGGTCGTCCTCAC 8994387 29 100.0 32 TCGTCCTCAC ............................. TCCACCACGCGCTCCAGGAAGCTGGTCCCCTC 8994448 29 96.6 32 TGGTCCCCTC ............................T GGGTGTTCGTCGGCATCCCGGTGCTCGTCGTC 8994509 29 100.0 32 GCTCGTCGTC ............................. CTCGGCAAGTCCGGCGCCGACGCCCTCTACGA 8994570 29 100.0 32 CCCTCTACGA ............................. CGCAGCGTCGGGTGCTGCCGCTTCATCAGGAC 8994631 29 100.0 32 TCATCAGGAC ............................. CAAGCGCGGTGTACACGATGTGGGGGTGGATC 8994692 29 100.0 32 GGGGTGGATC ............................. GTCCGCGCGGACCCGGGCGTCGGTGTCGACGC 8994753 29 100.0 32 GTGTCGACGC ............................. CAGTTCGGCAGCCTCCTCGGCGACATCTTCGG 8994814 29 100.0 32 ACATCTTCGG ............................. TGTGACGCCTGCCCCATCGCCAACGCGACGCC 8994875 29 96.6 32 ACGCGACGCC ............................T TCTTCGCCCCGGCCGTCCCCGCCGCCGCCTTC 8994936 29 100.0 32 CGCCGCCTTC ............................. GCCCGCACCTGCAGACGTACGTCCAGTCCAAC 8994997 29 100.0 32 CCAGTCCAAC ............................. TCCTGGGACGCCCTCAAGGTCCCGAACGTCTG 8995058 29 100.0 32 CGAACGTCTG ............................. GTGGGGGAGGCTGCGGAGGCGCAGACCACGTT 8995119 29 100.0 32 AGACCACGTT ............................. TACGCGTGGGGCGGCATCCTGGTGCGCACCTC 8995180 29 100.0 32 TGCGCACCTC ............................. GCTGCCATCGAGTCATCCCCTGCGACCCCGGG 8995241 29 96.6 32 CGACCCCGGG ..T.......................... GTTTCGTACCCGAGGGCCGGGCCGATGATGGT 8995302 29 100.0 32 CGATGATGGT ............................. GACATGATCGCAGCCCGATTCCTGCGGCAGGA 8995363 29 100.0 32 TGCGGCAGGA ............................. TCCACGGACGGCAACTGATCCCCGGCATGAAC 8995424 29 100.0 32 CGGCATGAAC ............................. GTCAACCGCGCGTTCGGCCGCAGCCGGCTGGT 8995485 29 100.0 32 GCCGGCTGGT ............................. CCTGACCGGCTGGCGTTCCAGGCGACGTCGAC 8995546 29 100.0 32 CGACGTCGAC ............................. TACGCCATCGCCTGGCGTAACGCGCTCCTCAC 8995607 29 100.0 32 CGCTCCTCAC ............................. ACCGTCACGTTCGACACGCGGGTCGGGTTGTA 8995668 29 93.1 32 TCGGGTTGTA ............T..A............. GACATCCACGGCAACCCGCTGAAGCTGACCCG 8995729 29 100.0 32 AGCTGACCCG ............................. AAAACCGGGCGCGCCGTGCAACCTGACGGCCC 8995790 29 100.0 32 CTGACGGCCC ............................. ATCAGCAGCATCGCCAAGGCCATCGTGGCGGG 8995851 29 100.0 32 TCGTGGCGGG ............................. GAGCCGGAGGCCCGGCAGACCGCCGTCGCCGA 8995912 29 100.0 34 CCGTCGCCGA ............................. TCCGCCCGAAGAAGGACCGCAGTACCGCCCCGTA 8995975 29 100.0 32 CCGCCCCGTA ............................. GCCCTCAACAGGCCGTCAACCGAGCACGCCAA 8996036 29 100.0 32 AGCACGCCAA ............................. ACGGACAAGGGCATCACCGTCCTTTTCACCTC 8996097 29 100.0 32 TTTTCACCTC ............................. GAGACCCTTGCGAAGACCAGGCGTGCCAGTGC 8996158 29 100.0 32 GTGCCAGTGC ............................. TCGCGGTGCCGCCACAGCGACGGTCGGGCGCC 8996219 29 96.6 32 GTCGGGCGCC ............T................ CTGATGCTCGACATCGCGAAGGGCATGCAGGC 8996280 29 100.0 32 GCATGCAGGC ............................. GCCGAGAACGAGCGGCTGAAGGCGGCGAAGCC 8996341 29 100.0 32 CGGCGAAGCC ............................. GCCATGGAGTAGCCCTGCTTGAAGGCGTCGTA 8996402 29 100.0 32 AGGCGTCGTA ............................. TCGGACACCGAGGTCAGCGCGTGGCTGCTGTC 8996463 29 100.0 32 GGCTGCTGTC ............................. CCACCGGGGACGTAGCCGACGTCCGCCGCCCC 8996524 29 96.6 32 CCGCCGCCCC ............T................ TCGGAGCTGGCCAGGGAGCTGACCACCCGGGT 8996585 29 96.6 338 CCACCCGGGT ..........T.................. CTTCCAGGTCAGCGGGAACTGGCCAAGGCTGAGTGCTCTCCGCACGAGCGGTGGTGAACCGAAGCCGGAGACCGAGCAGCAGGACCAGCCTCAGTGCTCTCCGCGCCAGCGGAGGTGAACCGTACTGGATCTTCCCCGTCCGTGACGAGCACGGGGTGCTCCCCGCGCGAGCGGAGGTGAACCGCCATGGTGATCTACCACAGCGAACTTGCGGGCGTGCTCTCCGCGCGAGCGGAGGTGAACCGGTCCGCCTCGACGGTCTGCACCGGGCGAAGATGTGTTCTCCGCGCGAGCGGAGGTGAACCGTACCCGGTTCAGTGAAGGTCAGCTGGGGCCGT 8996952 29 96.6 CTGGGGCCGT ......................C...... ACGAAGACGC ========== ====== ====== ====== ========== ============================= 55 29 37 GTGCTCTCCGCGCGAGCGGAGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [125,102] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 9002720 29 100.0 32 CTGAGACGGG ............................. GACGCCGACCGAACCGTCATGCTGACCGTGGA 9002781 29 100.0 32 TGACCGTGGA ............................. GCCACCGTGGATATCAAGCTGGCCGAGCGGAA 9002842 29 100.0 32 CCGAGCGGAA ............................. TGGCGCCAGCCGATGGCCGTGCGCTCACCGTC 9002903 29 100.0 32 GCTCACCGTC ............................. GACGGGGACACGCTTCGCGTGATGCTGGACCA 9002964 29 100.0 32 TGCTGGACCA ............................. GCGGACAACGAGGTGCGGGACGGGATCCGGTC 9003025 29 96.6 GGATCCGGTC .....................A....... ACCGGCCAG ========== ====== ====== ====== ========== ============================= 6 29 32 GTGCTCTCCGCGCGAGCGGAGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [118,200] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_003210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 544375 29 100.0 36 AAGTTAGTGG ............................. CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA 544440 29 100.0 36 TTGCAATTTA ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 544505 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 544569 29 100.0 37 TGGGTTACAA ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 544635 29 96.6 CCACCAAAGC .......................A..... GAAAACCTGT ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,261] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_003212 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2768992 36 100.0 30 NNNNNNNNNN TGG..T....T....G.....G.............. TATTGCATAGATACTAATGTTTCCACTTGT 2769058 36 100.0 30 NNNNNNNNNN .................................... AACATGAACAGAGATTCAGCATCGTTGCTA 2769124 36 100.0 30 NNNNNNNNNN .................................... TTGTATTATTTTGGTGATTGCCTTTCTGTA 2769190 36 100.0 30 NNNNNNNNNN .................................... TTTTCCGAGCGCTGCATCTTTTATACTGTT 2769256 36 100.0 30 NNNNNNNNNN .................................... CTTGCTTCTCTTGTTGTTCCTCTATCCATT 2769322 36 100.0 30 NNNNNNNNNN .................................... ATTTATTATGAGTTTGGGACTGGTGAGAAA 2769388 36 100.0 30 NNNNNNNNNN .................................... TATAATGAGTTAGATGGCATTATATGCGAC 2769454 36 100.0 30 NNNNNNNNNN .................................... TCGACGATTTAACAGATTTTACAGATGCTT 2769520 36 100.0 30 NNNNNNNNNN .................................... ATAATGCAGTAAATAAAGAAATACTTTGCA 2769586 36 100.0 30 NNNNNNNNNN .................................... TATCCTAGGCAAAGTTACCAAAGCGCTACG 2769652 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 11 36 30 GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [63,128] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_003228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2998070 29 100.0 34 TTTTGCACAA ............................. TAACCGGACTTACAGCTGATAATCAGTTAGAGTA 2998133 29 100.0 36 AGTTAGAGTA ............................. CAATTACACAGATCGTAAAACTTGCCGAGCTATTTA 2998198 29 100.0 34 GAGCTATTTA ............................. CGTATTCGCCATCGAACCGAAGACCGGCGTGTAT 2998261 29 100.0 34 CGGCGTGTAT ............................. AGCAAGGGAAACTGTACGATGTACAAGTACTCGG 2998324 29 100.0 37 AAGTACTCGG ............................. CTGATGAAGCGATTAAGAAGATCAATGTGATGATTAA 2998390 29 100.0 36 TGATGATTAA ............................. TCAGTTACCCTGACGGCCAATCCTTCCGCCATTTCC 2998455 29 100.0 34 CGCCATTTCC ............................. GAAGTCCGCTGAAATCCAGCCCGCCTTTTCGTTC 2998518 29 100.0 CTTTTCGTTC ............................. TCTACCCAT ========== ====== ====== ====== ========== ============================= 8 29 35 ATTTCAATTCCATAAGGTACAATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [248,214] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_003228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 4661170 47 95.7 30 AAAGCGATGC ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 4661247 47 100.0 29 TAGCAAGTAT ............................................... TGATTTGGCATCTGCTATTTGATCAATCA 4661323 47 100.0 30 TGATCAATCA ............................................... GCAATTACCCCAATCCTTCATGCCCTGAGA 4661400 47 100.0 30 TGCCCTGAGA ............................................... TTTGCCGGATACCTTAGTAGTGGTAGTCAC 4661477 47 100.0 30 TGGTAGTCAC ............................................... GATAGCGGCGGGGGAGCGAACGGCAACGAA 4661554 47 100.0 29 CGGCAACGAA ............................................... AGAACCATCACGAATCAGATTCCAATACT 4661630 47 100.0 30 TTCCAATACT ............................................... ATCCTGCGAAATTTCGACCTTATCGCCGGG 4661707 47 100.0 29 TATCGCCGGG ............................................... GTTATTGTAAGAGTCATAAAAGCGTGTAC 4661783 47 100.0 30 AAGCGTGTAC ............................................... TTAAATACCTCGTCAAAAGCGGATTCCGCA 4661860 47 100.0 30 GGATTCCGCA ............................................... GTCTTGGGAATCTGTACGATTGTTGCAGAA 4661937 47 100.0 30 TGTTGCAGAA ............................................... TCTTAACAATGCGCTGCATCTCTCGAATAA 4662014 47 100.0 30 TCTCGAATAA ............................................... CCACAAATCTTTATTCCAGTTGGCGTACCG 4662091 47 100.0 30 TGGCGTACCG ............................................... AAACCATTCAAATATCTGCGCAATTGGGTA 4662168 47 100.0 29 CAATTGGGTA ............................................... ACTGTTGAACTTTTTACTCGTAATCCTAA 4662244 47 100.0 30 GTAATCCTAA ............................................... TCAATTGACCCGAAAGTGCAACGGTCAGGT 4662321 47 100.0 29 ACGGTCAGGT ............................................... TAAGGATAGGAATATTCAATCTTATACAG 4662397 47 100.0 29 TCTTATACAG ............................................... GCATAAAGAACTGGCATATTACCACTGAC 4662473 47 100.0 29 TACCACTGAC ............................................... AACAGAACTATCAGACACTATCTCTGAGT 4662549 47 100.0 565 ATCTCTGAGT ............................................... CGAATGGTCAAAACTATGCTGCTCAGGTTAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCCTCCAACTCTCGAAGAGCAGCAACAATATCGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTTCTTGCGGTTTAAACACTTCATTAAAAGCGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAAACTTAGTAACAGAACCGACAATATTAGAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTCTTTTAACCTTTTATTAGCATTTCTCAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTGCTTAGTTATAACGCAGAATATGCACATGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAGTGTCTTAAAGAGGTGATTAATGAAATGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAGACTTAGCCATTTGTGTGGCATTCACCA 4663161 47 100.0 GCATTCACCA ............................................... TTACTCCGCA ========== ====== ====== ====== ========== =============================================== 20 47 57 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [445,110] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_003228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 4662626 47 100.0 30 GCTCAGGTTA ............................................... CTCCAACTCTCGAAGAGCAGCAACAATATC 4662703 47 100.0 30 CAACAATATC ............................................... TTCTTGCGGTTTAAACACTTCATTAAAAGC 4662780 47 100.0 30 CATTAAAAGC ............................................... AAACTTAGTAACAGAACCGACAATATTAGA 4662857 47 100.0 29 CAATATTAGA ............................................... TCTTTTAACCTTTTATTAGCATTTCTCAA 4662933 47 100.0 29 CATTTCTCAA ............................................... TGCTTAGTTATAACGCAGAATATGCACAT 4663009 47 100.0 29 ATATGCACAT ............................................... AGTGTCTTAAAGAGGTGATTAATGAAATG 4663085 47 100.0 29 TAATGAAATG ............................................... AGACTTAGCCATTTGTGTGGCATTCACCA 4663161 47 100.0 GCATTCACCA ............................................... TTACTCCGCA ========== ====== ====== ====== ========== =============================================== 8 47 29 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1901,110] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1727817 35 97.1 37 TTCATCATCA ....T.............................. CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG 1727889 35 100.0 38 AAAGGGGAAG ................................... AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT 1727962 35 100.0 40 ATTGGGACAT ................................... AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG 1728037 35 100.0 TGAAAATCAG ................................... CCTACCCTTG ========== ====== ====== ====== ========== =================================== 4 35 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [84,338] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1732269 35 100.0 39 AACAGGTAGG ................................... TATCAGAAATTGTGTGTTTGGGTCTAACTTATTAAAAAG 1732343 35 100.0 40 TATTAAAAAG ................................... ACTGCTAAGAAAAGCTTGAATTTCTGCATCGATTATATGT 1732418 35 100.0 39 GATTATATGT ................................... ACGCTTCCTAGAAAATTTATTCCTGGAATTCTAGATATA 1732492 35 100.0 39 TCTAGATATA ................................... TCTTGTGCCTTAATGGCAACAACAAGCAAAGCGGAGAGT 1732566 35 100.0 34 AGCGGAGAGT ................................... GTTTTCACCGATTCCGACAAAACTTGTTCCACCA 1732635 35 100.0 35 TGTTCCACCA ................................... TTTATTGTGCGCCTACACCTCCGATAGAAATTTCT 1732705 35 100.0 38 AGAAATTTCT ................................... AAATAAAAGACAAGGAAATATATAAAGAAAATTATTAT 1732778 35 100.0 39 AAATTATTAT ................................... ACTATCATAATTTGTTGGGCTTGAAAGCGGACCAACTAG 1732852 35 100.0 40 GACCAACTAG ................................... CTAATAAAAAACGGAACTGGTGGATAGAAAAAGTTTGTAA 1732927 35 97.1 39 AAGTTTGTAA .....G............................. CAATAAAATGCAAGAAACGATAATGCGAGCAACAAAACG 1733001 35 97.1 35 CAACAAAACG .....G............................. TTCGGCCTGGCGTTTGAGTCTTTCAATCTCTTCAG 1733071 35 97.1 36 ATCTCTTCAG .....G............................. CTTCAAACTGGTTATCAATAGGAACGTAAACCAAAA 1733142 35 97.1 39 TAAACCAAAA .....G............................. TGGATTTAATTTTAATGTATCTCTAAGGTAACAAGCCCG 1733216 35 97.1 36 AACAAGCCCG .....G............................. CATTGGAATTTGCCAAATTAAATGCGGCTTTTTTTT 1733287 35 97.1 GCTTTTTTTT .....G............................. ATAATCAATA ========== ====== ====== ====== ========== =================================== 15 35 37 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [615,168] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1836813 37 100.0 37 CACCTGGGCG ..................................... AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA 1836887 37 100.0 35 TTTGATGCGA ..................................... TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA 1836959 37 100.0 33 TGACCTGAAA ..................................... GGCAGCACAATACTTATCACGGGCTAAATTCTG 1837029 37 100.0 35 CTAAATTCTG ..................................... CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC 1837101 37 100.0 35 TGGAAGTTAC ..................................... CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG 1837173 37 100.0 35 GCTTTAATTG ..................................... TCTACACTGACCAATGTTGAAAGTATCAAGACAGG 1837245 37 100.0 41 TCAAGACAGG ..................................... AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG 1837323 37 100.0 34 CCAAAGTATG ..................................... AGCTATTGCACATTTACAAAAGCTCGGATATCAA 1837394 37 100.0 39 CGGATATCAA ..................................... TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA 1837470 37 100.0 33 AGCCCGTAAA ..................................... CGGATAATCCCTTACGGATGGATTCACAGATTT 1837540 37 100.0 37 TCACAGATTT ..................................... TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT 1837614 37 100.0 36 TTAATCAAAT ..................................... TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC 1837687 37 100.0 AATAAGCAGC ..................................... ATCAGATG ========== ====== ====== ====== ========== ===================================== 13 37 35 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [258,39] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2178606 35 100.0 42 GTTTTATAAA ................................... TCTGGATTATATTGTATGCAACGTAGGTTGCTCAATATATTT 2178683 35 100.0 40 CAATATATTT ................................... TGTCTATGATAGGGCAAACAAGGCATAATATGTCTTTTAT 2178758 35 100.0 39 TGTCTTTTAT ................................... AATTTTTTAGGTTGCCACAAAAGCAACCGAACAGTTAGG 2178832 35 100.0 40 AACAGTTAGG ................................... TGAAAGCGCTCAGCGCCCGCTGGGTAGATCTGACTCGATC 2178907 35 100.0 41 TGACTCGATC ................................... AAGATGAAATCGACCAAGCGTGGAGCGCTGGTCAGCATACT 2178983 35 100.0 39 TCAGCATACT ................................... AAGTAGAAGAAGCTCGCAAAAAGGCTGCAACTGCTTCAA 2179057 35 100.0 41 ACTGCTTCAA ................................... TGCTGGAGCAATTCCAACTGGTTGGGCTGGTATGATATATA 2179133 35 100.0 ATGATATATA ................................... CCTACACT ========== ====== ====== ====== ========== =================================== 8 35 40 GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [438,444] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3516821 35 100.0 39 TAAGAGTTTG ................................... CTATCAATCGTTATTGCTGTTTTTTTAGCATTTTAGCGT 3516895 35 100.0 38 ATTTTAGCGT ................................... TTGCAGCTACTGCTGATGCAACTTGAATCTGTACTTGT 3516968 35 100.0 36 CTGTACTTGT ................................... CGATATGGTTCCGTTGTTGAGGGTTGCCCTGCGAGT 3517039 35 100.0 33 CCCTGCGAGT ................................... ATGAGTGAAGATAGCTTGATAAAAAAGCTCAGT 3517107 35 97.1 38 AAAGCTCAGT ........A.......................... TTGAGGCTAGATTATTTATTTTTGATGCTGTTTCCTGT 3517180 35 100.0 36 TGTTTCCTGT ................................... CCTTTTCTTGTTTTTCCCCACGCAGTATAAGCGAGT 3517251 35 100.0 ATAAGCGAGT ................................... CTTCGTTCCA ========== ====== ====== ====== ========== =================================== 7 35 36 TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [74,1067] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 4362328 38 100.0 33 AGCTGTTAAT ...................................... ATCGCGCACAATATAAAGTTCTGAATATTCAAA 4362399 38 100.0 32 AATATTCAAA ...................................... TTAAATTTTGGATGCGATCGCCCCACCGCTTC 4362469 38 100.0 34 CCACCGCTTC ...................................... CGATGGATAAAGATACTAACTTTTTCTTCATCAG 4362541 38 97.4 TCTTCATCAG .....................................T GCCACTCTAT ========== ====== ====== ====== ========== ====================================== 4 38 33 CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [9,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-14.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [412,448] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3840120 37 100.0 34 GTAACTAGCC ..................................... AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA 3840191 37 100.0 34 TGTGGGTGAA ..................................... CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG 3840262 37 100.0 44 ACCAAGACCG ..................................... AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG 3840343 37 100.0 36 TACCAGCTTG ..................................... AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA 3840416 37 100.0 36 CTTTTTAAGA ..................................... ATCATTGATTTCATACACAACTCGCACAGCTATAAG 3840489 37 100.0 33 CAGCTATAAG ..................................... TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA 3840559 37 100.0 35 CCTCCTAAAA ..................................... CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA 3840631 37 100.0 33 CCAGACGGTA ..................................... CTATTTCCTGAAACGATTTAGACAAGGATCTTT 3840701 37 100.0 AAGGATCTTT ..................................... AACATGAAAT ========== ====== ====== ====== ========== ===================================== 9 37 35 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [320,88] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3517542 37 100.0 34 AATGAGTCTG ..................................... ACACACATTATCAGCAAATCGTCTAATACAGTCA 3517613 37 100.0 36 AATACAGTCA ..................................... TTTAGCTTTGGATTGCGTGATAGAGAGGCTGAGGGT 3517686 37 100.0 34 GGCTGAGGGT ..................................... TGCTAGGGGGGTGGCTCACTTTGCCTCTTCTCTT 3517757 37 100.0 40 CTCTTCTCTT ..................................... CATAGCAAAAGTATTTAAGCTATTCTTTGCTAAGTAAACA 3517834 37 100.0 35 TAAGTAAACA ..................................... GTTTTTTGCGGGATGGGGGGGGTGGGTGAAGATTC 3517906 37 100.0 34 GTGAAGATTC ..................................... CCGCCAGCGATTAGATTGCTGGGGTTAGACATCA 3517977 37 100.0 34 TTAGACATCA ..................................... CATCTACAGCGATTGATGTGGCATCAGTAAGAGC 3518048 37 100.0 CAGTAAGAGC ..................................... TGCCTGAGTC ========== ====== ====== ====== ========== ===================================== 8 37 35 GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [795,268] Score: 0.18/0.18 # # Final direction: R [0.18,4.5 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 445573 37 100.0 34 NNNNNNNNNN ..................................... TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC 445644 37 100.0 42 NNNNNNNNNN ..................................... AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA 445723 37 100.0 48 NNNNNNNNNN ..................................... CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG 445808 37 100.0 47 NNNNNNNNNN ..................................... GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG 445892 37 100.0 43 NNNNNNNNNN ..................................... CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG 445972 37 100.0 44 NNNNNNNNNN ..................................... TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA 446053 37 100.0 41 NNNNNNNNNN ..................................... TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG 446131 37 100.0 46 NNNNNNNNNN ..................................... TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA 446214 37 100.0 39 NNNNNNNNNN ..................................... CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG 446290 37 100.0 36 NNNNNNNNNN ..................................... GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA 446363 37 100.0 44 NNNNNNNNNN ..................................... GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT 446444 37 100.0 45 NNNNNNNNNN ..................................... GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA 446526 37 100.0 44 NNNNNNNNNN ..................................... GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA 446607 37 100.0 37 NNNNNNNNNN ..................................... TATCAAACTTATATAAACACAGCAAAGCTATCCTATG 446681 37 100.0 45 NNNNNNNNNN ..................................... GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG 446763 37 100.0 42 NNNNNNNNNN ..................................... GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC 446842 37 100.0 47 NNNNNNNNNN ..................................... CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG 446926 37 100.0 41 NNNNNNNNNN ..................................... TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG 447004 37 100.0 35 NNNNNNNNNN ..................................... GTTTGTATGGACGGCCATACAGATCGCCGATGGAA 447076 37 100.0 35 NNNNNNNNNN ..................................... TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG 447148 37 100.0 40 NNNNNNNNNN ..................................... ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA 447225 37 100.0 33 NNNNNNNNNN ..................................... TGTCCCTATCCAAAATACTCCTTTTTTATAAGG 447295 37 100.0 37 NNNNNNNNNN ..................................... CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT 447369 37 100.0 42 NNNNNNNNNN ..................................... CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT 447448 37 100.0 39 NNNNNNNNNN ..................................... TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA 447524 37 100.0 39 NNNNNNNNNN ..................................... ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA 447600 37 100.0 43 NNNNNNNNNN ..................................... ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA 447680 37 100.0 37 NNNNNNNNNN ..................................... CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA 447754 37 100.0 36 NNNNNNNNNN .................................GTG. GACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAG 447827 37 100.0 1 NNNNNNNNNN C.........CA..AGGGGG..G..ATTA.AA..T.T NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 30 37 40 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [335,385] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 95531 24 100.0 40 AGAGATCCCA ........................ TATTCAGAGTACTCTAGGCCGGTATACAGAGGGCCTAAAA 95595 24 100.0 44 GGGCCTAAAA ........................ AACACGTCAGCCAGCCCTCCCCATGTGGCCCTGGCTGTACACAG 95663 24 100.0 44 CTGTACACAG ........................ AAAATTTGTAAAGTTAGAGATAGCGAGCCGCGAATTGAGAGCGG 95731 24 100.0 49 TTGAGAGCGG ........................ TCTTCGGACAATGACGCGCTTAGAATGGGCGATTTATTCAACACGTACA 95804 24 100.0 47 AACACGTACA ........................ CAATTACTCTTAATTCAGAGTCTCCCTCACAGACGGCAAAATACTCA 95875 24 100.0 45 AAAATACTCA ........................ ATGTTAATTGAAGGGCCTGAGAACGCTGTTCAGTTCATTCTCAAT 95944 24 100.0 42 CATTCTCAAT ........................ CGTCTTTCTTCTTCGACACCTTGATGTTCAACGCCTCTACAG 96010 24 100.0 44 GCCTCTACAG ........................ GTTCTAAATATACCGACGGCCGCGACATTTACTAATTCTCTGAA 96078 24 100.0 46 ATTCTCTGAA ........................ TTATATACTTGGATCTGTACGTCCCCTTCCGTATATACACCCTGCC 96148 24 100.0 41 ACACCCTGCC ........................ TTGACAATTCAGCCCAAAGTGTAATCCGTTGATATGGTCGG 96213 24 100.0 47 ATATGGTCGG ........................ TCGGTAAATTAGTCAGTGAGAGCTTGTTAGGTATACTCCCCCCTTCC 96284 24 100.0 41 CCCCCCTTCC ........................ ATACTAATTGTGGCGGGGTTCAACCGTCAGCTGTTCCAGGT 96349 24 100.0 38 TGTTCCAGGT ........................ GTCCGCAGTCAACAGCCAAAAAGAGGGGGAAATAAACG 96411 24 100.0 40 GAAATAAACG ........................ CTTTATCAACGTAGACCCTTTTGTATATCAAGCTCTTTCC 96475 24 100.0 48 AGCTCTTTCC ........................ CAGGTAGAGGTGCGGTTCAACAACGTTGTTGGCCACGTGGACTTTTTT 96547 24 100.0 35 GGACTTTTTT ........................ TGGTTAATTCCAAGCTGAGGCAGGTCTGTGGACCC 96606 24 100.0 44 CTGTGGACCC ........................ CCCGCGGGCCCCGGCCGCGCCAGCGGCCACCTTGTTTTTGTTGT 96674 24 100.0 40 TTTTTGTTGT ........................ GCGCCGTCCATGCGAGCACGGGGAAGACTGCCGAGGGGTC 96738 24 100.0 43 CCGAGGGGTC ........................ ATTATCTTGACTAGCATCGCCACGGCGGCGAGCCCTGCGAGCT 96805 24 100.0 40 CCTGCGAGCT ........................ ATCCTAGGCATTGGGATGTACACTGCGATTTCCCCCTGCG 96869 24 100.0 44 TCCCCCTGCG ........................ AGAGTCCCTCCAGCTCCTCGAGGGCGGCGCACACTACGCACATG 96937 24 100.0 45 TACGCACATG ........................ TGCTGTCTGGAGTTTCGGTTGTGCTGGCAGCTGTCTTTGGCGCCT 97006 24 100.0 45 TTTGGCGCCT ........................ GCTGTATGGAGAGCCAATGCGCATGCGGCGTAAGACTGTATATAC 97075 24 100.0 42 CTGTATATAC ........................ GCAAAAGGCCTGCGGAATAGCCAGCCATCCCCCCGCCTGGCG 97141 24 100.0 44 CCGCCTGGCG ........................ CCTCAATTCGTCTACCATGGTCTCAGGGTCGATAATAAACTTCT 97209 24 100.0 43 ATAAACTTCT ........................ AGCTTTTTAAGGGCCTCATTTTTCTGGGCCTCAGTAATAAAGC 97276 24 100.0 41 GTAATAAAGC ........................ TATGCGTTGACCCGGGGCCCTACACAGCTCTCCTACTTACC 97341 24 100.0 45 CCTACTTACC ........................ ATGCGTATCATATACGCCGCACCCGCACAAACTAATAACCGCATT 97410 24 100.0 48 TAACCGCATT ........................ ATACGGTGTACTGCAACGGCCGCGATTTGACTGAATGTACAAAAACCG 97482 24 100.0 44 ACAAAAACCG ........................ TAGGTACGTATTTGAGGCGGTCTGCCCTCTGTGCGTGTCCAGTG 97550 24 100.0 42 GTGTCCAGTG ........................ GGGAGGCTCAGCAAACAGGACACACAGCTTCCTGGGTACCCG 97616 24 100.0 53 TGGGTACCCG ........................ GCCACCTGCTTAGCCGCCTCCTTCGCCCTCTCAGCCCGGCTGGCCTCCGACGG 97693 24 100.0 47 CCTCCGACGG ........................ CGGTGGCGGTGTACCAAATGTTCTACCTAGCCGGCGTCCAGCCGCCG 97764 24 100.0 45 CCAGCCGCCG ........................ ATTTTTCAGTTCTCCCGCCGAAGTGCTTGAGATACTCGCAACCGT 97833 24 100.0 45 TCGCAACCGT ........................ CTAGACGGAACTCTCACCAGCTCCTCCTCGGCGCGCTTGCGCGCC 97902 24 100.0 43 CTTGCGCGCC ........................ CTATTCCAGTGGCGAACTCGGCCGATATCCTAAGCCCTGCGAG 97969 24 100.0 49 GCCCTGCGAG ........................ CAGTTGGGACATGTTTGAGAAGGAGCTGGCCAGGGCTAGGAGTGCTGAG 98042 24 100.0 45 GAGTGCTGAG ........................ GTACGGATACAGCGCCACTGCTTGCAGCGGCGCGTCTACGCCGTT 98111 24 100.0 43 CTACGCCGTT ........................ TCGGCACTGGGATCGTCCTGGCCATAGTCGGCATTTTCATGGG 98178 24 100.0 46 TTTTCATGGG ........................ CGCGTTCTCGACACTGTGATGGATCTGATCCGCATGGATGCAGTGG 98248 24 100.0 41 GATGCAGTGG ........................ ACTCGTTGCCCAGAGAGCGCCTCTGGAACCTAGCCAGCACC 98313 24 100.0 43 AGCCAGCACC ........................ CACAATTGCGAAAAACGCGGCCCATTTGTATATAGCTCTCCCC 98380 24 100.0 44 AGCTCTCCCC ........................ CTAATTTCAGTGATAAGTCCATACGGCCCAATTTGACGACATAA 98448 24 100.0 42 GACGACATAA ........................ GCGAGGAGATTGCGCAGGAAGAGAACTCCTGCAAGCGCCGTT 98514 24 100.0 41 AAGCGCCGTT ........................ AACTATATAACAAAACTAGAGCCGCTGTTGAGGAAGGCTAA 98579 24 100.0 48 GGAAGGCTAA ........................ CTTGAACTCAACGTCTCCAAGCATTTGTTTATACACGAGCACGCGGGG 98651 24 100.0 45 GCACGCGGGG ........................ CGACGCCCGTATCGTCTACTTTCACGGCGGGCTTCTTGACAACGG 98720 24 100.0 43 TTGACAACGG ........................ CACTATTTTGAAGAGTGGCATGTCCATTTTGGCGTCTCTCTTT 98787 24 100.0 43 GTCTCTCTTT ........................ GTGCCCCCTCGTGGCCCGGTACCGGGCCCTGACGGCCGCGAGA 98854 24 100.0 43 GGCCGCGAGA ........................ CGCTGTCCCAGTTGCGGCGGGTTGGTGTTGGCGGTCGGCGGAA 98921 24 100.0 42 GTCGGCGGAA ........................ AGCCGCGGCGCCTCTTCACGAGCCCGATGGCGGCGAGCTGCC 98987 24 100.0 49 GCGAGCTGCC ........................ GAAAAACAAACCTTTTTCAAGAAACTACACCAGGCCCTATAGGGGCCAG 99060 24 100.0 42 TAGGGGCCAG ........................ CTGAGTTGACTGATAAGTTCATACGGCCCAATATGACGACAC 99126 24 100.0 43 ATGACGACAC ........................ CCTCAAAGCCGCTACAATAATCATCGAGGAGTATTCAAAAGAA 99193 24 100.0 46 TTCAAAAGAA ........................ TTGAGACTGTGGAGTTCGACATGGTGCGAACAGTGGCTGGTCTCGA 99263 24 100.0 42 CTGGTCTCGA ........................ TTTACCTATGTTGAAACTGATATGCGACTAGTGGACTGTATG 99329 24 100.0 40 GGACTGTATG ........................ TGTCCAATGAGCACATCTTCAATAGAGGCACCTCTATGCG 99393 24 100.0 44 CCTCTATGCG ........................ AATACGCCTTCCTCGACTCGTGGTCGGCGTAGCACATAATCGTC 99461 24 100.0 48 CATAATCGTC ........................ AAGATTTTAGTCATCTCCTCCGCCACCAGGAACACTATCCTTGCGGGG 99533 24 100.0 45 CCTTGCGGGG ........................ CGGGAGATTGGGCAGGTTCGCCGCCTATGGGGACAATATCATCTT 99602 24 100.0 47 ATATCATCTT ........................ TATCTAAATCAGCTTGTGCGTGGCTTGATAAGCAAAAACATGCTGGG 99673 24 100.0 45 ACATGCTGGG ........................ GTGACGTCTAGATTGGGCAGGAGTGTTTTAGCCCTCTCCCCCGCC 99742 24 100.0 46 CTCCCCCGCC ........................ TGTACTGCTGAGTGGCGTTTATCTTGACGGCGATGTAGGTCTCGGT 99812 24 100.0 46 AGGTCTCGGT ........................ AAGATCCTCAAGCCACACCACTCTGCCGCAGAGCGGCGTCCCTGGT 99882 24 100.0 43 CGTCCCTGGT ........................ TTCTGCCTTTCGGGCACCCTTCTCATTTGGCCCCGCCCGAAGC 99949 24 100.0 45 CGCCCGAAGC ........................ TCTGGCGAGAACTGTGTAACGACTACTACCACACAGCCACAGGGA 100018 24 100.0 43 GCCACAGGGA ........................ GAGGTATACTCGGCGGCGTATACATATATAGCCCTAGAGCGCT 100085 24 100.0 44 CTAGAGCGCT ........................ ACCATCGTGGAGTGCCAAGTTCGCACCCATCGAATTTACACTAG 100153 24 100.0 45 TTTACACTAG ........................ AAGCACGATTTGACAAAACAAGGTAAAGGGACTTGGGTTCGCCGT 100222 24 100.0 42 GGTTCGCCGT ........................ GTCCCTATACCCTGCTCCGTCCCAGTCTGTAGATGGGTCCTT 100288 24 100.0 47 ATGGGTCCTT ........................ CTGGCGAGATTGATGTTAGAGCACGCGGACGCCGTTATTGAAATACT 100359 24 100.0 45 TTGAAATACT ........................ GCGTTTTCATCAACAACAACGCCCCCGTACCACTCAAGAATAATA 100428 24 100.0 44 AAGAATAATA ........................ GTTCAATACGTTTGAAGTTGTCTGCAATTTCCTGAACGGCCCTA 100496 24 100.0 49 AACGGCCCTA ........................ TCTCTGTCTCGTACCTTGTAAATGTATGGCGTCTTCACAACCTGAATCT 100569 24 100.0 41 ACCTGAATCT ........................ GTAAAAACTATATTAACATGCCCAAACGTTATGACCGCCGT 100634 24 100.0 42 TGACCGCCGT ........................ TGGACATTTTCGCCTCTGCTTCGGGCCCATATGATTGGACGA 100700 24 100.0 46 GATTGGACGA ........................ GTGGCGTTGATCTCCGCCCCGAAGCCCATGCGCGCCCCCAGCTCGG 100770 24 100.0 46 CCCAGCTCGG ........................ ACACTGCAGTACCGTGCTTACATGGAATATAGAAGTAGCGCTTACC 100840 24 100.0 52 AGCGCTTACC ........................ TCCGGCACCCTCCCAGTGTGCCTCTTCATAAGGGCGATTAGGTAGATGGCCC 100916 24 100.0 42 TAGATGGCCC ........................ GATCTTCGCGCTGAACAGGCGCAACATGTTCTCGCTGAGTTC 100982 24 100.0 CGCTGAGTTC ........................ TTAGAAATAA ========== ====== ====== ====== ========== ======================== 81 24 44 GAATCTCAAAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [339,65] Score: 0.18/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1064076 30 100.0 36 GAAGTCCAAA .............................. CGGAGGCTCTACCTAATCATCCTCTTGACACAACTC 1064142 30 100.0 37 GACACAACTC .............................. AGTTGACTTCACTACTACTTCTTCATCTATAATTCTA 1064209 30 100.0 37 TATAATTCTA .............................. GAAGAGAGGTTAGAATAACAGCTATTAGCGTTTCACA 1064276 30 100.0 35 GCGTTTCACA .............................. TTTGGAGATAGAGTTGCAGTAGAAATGATAAGGAA 1064341 30 100.0 37 TGATAAGGAA .............................. CACGGCCTACCTCGCTGAGATCCGGGTAGATGACAGC 1064408 30 100.0 AGATGACAGC .............................. AGGAGAATAA ========== ====== ====== ====== ========== ============================== 6 30 36 CTTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [10,1580] Score: 0.18/0.18 # # Final direction: R [0.27,5.18 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1064565 30 100.0 37 CCGCAAAAAG .............................. CTTATAAGATTTTCCCATTTAAGCAGAGCTTAGATAA 1064632 30 100.0 45 GCTTAGATAA .............................. CTGACTTTAGAGACTTATACAATAACAACAACATATCTAAAGTCC 1064707 30 100.0 37 TCTAAAGTCC .............................. GCTACAACCCTCCCCTCGTAGTAGTACTTCCCATCGT 1064774 30 100.0 38 TTCCCATCGT .............................. CCTTATATGGGTGTTGTGAAGCAGGATAGAACTCTTGA 1064842 30 100.0 37 GAACTCTTGA .............................. GTCCCCGTAGTCCCTTAGAACTTTGTAGCCCTTCTTC 1064909 30 100.0 40 GCCCTTCTTC .............................. CTTCCAGCATTCTCTGCCTTCACGTAAACTTCTGTACCCT 1064979 30 100.0 37 TCTGTACCCT .............................. GCCAATTAAGTTCCTCCAGACAGATGAAGCCAGCAAA 1065046 30 100.0 37 AGCCAGCAAA .............................. CGAGGAAGGCTCCCTCTAAACCAGCCAAGGAGGTTAA 1065113 30 100.0 39 AGGAGGTTAA .............................. TGGCCACCCACTCCAATGCGCCTTTCACTTTTTGGCCAA 1065182 30 100.0 34 TTTTGGCCAA .............................. TATCAAAAGGTTAAGGCTTCTGTAAAAGAACTTA 1065246 30 100.0 37 AAAGAACTTA .............................. TTGCACTCACGTGTAACAAGTACCTGTACAATAGATA 1065313 30 100.0 37 ACAATAGATA .............................. CAATATTTTTTCAATGTCTGTCATTGTCCCACCTCCT 1065380 30 100.0 37 CCCACCTCCT .............................. TGTTTTCACTAATCGAAGACTTCGTAAGAGATAACGA 1065447 30 100.0 37 GAGATAACGA .............................. CTGAAGTGCTCTCAGCCGCAAGGACCGCATACTACAA 1065514 30 100.0 CATACTACAA .............................. AGGGGGCTTT ========== ====== ====== ====== ========== ============================== 15 30 37 CTTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [499,474] Score: 0/0.18 # # Final direction: R [0,5.27 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 27091 30 100.0 48 NNNNNNNNNN .............................. TTATATGATTCATTTCTTGTCTTAAGCAATCTGATCTGACCAGAGCTG 27169 30 100.0 36 NNNNNNNNNN .............................. TAAAGTTTATAAACTTTTCGTGTATAGAAAAGTGCA 27235 30 100.0 38 NNNNNNNNNN .............................. CCGGTTCTGCACCCGAAACTTTCATACCAAAATACTCC 27303 30 100.0 36 NNNNNNNNNN .............................. GGTCATACTTTACTGCTACAACCCGCTCTGGGTCGA 27369 30 100.0 40 NNNNNNNNNN .............................. CTCTTATGCTGAATTTTTCTGAATCTTCGGATACTGGCAA 27439 30 100.0 37 NNNNNNNNNN .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 27506 30 100.0 38 NNNNNNNNNN .............................. GGAAATGTGCGTAAAGGTTTTCTTCCCAGGCTTTCGCT 27574 30 100.0 36 NNNNNNNNNN .............................. GTAGTGAGGCGTTGAACTTGACCCACCACCAGCCCT 27640 30 100.0 39 NNNNNNNNNN .............................. CACTACTGTCCTCTCGACAATTGACGTTATTACAGTCGA 27709 30 100.0 38 NNNNNNNNNN .............................. TCAAAACTTTACAAAAGTAAAGAAAAAATTGAACGGGT 27777 30 100.0 37 NNNNNNNNNN .............................. GCGTGCCGTGTGTTTTTATAACTGCTCTAATGTGTCT 27844 30 100.0 37 NNNNNNNNNN .............................. TTGCTGCATATCCAGTGTGGTTGGTCTTGAGGTATAT 27911 30 100.0 37 NNNNNNNNNN .............................. AGACATTAGGAGACAGTATAGGCCAGAACTTGCCCAG 27978 30 100.0 36 NNNNNNNNNN .............................. TTAGCAAATTGCCGATTACTGCACATAAAAAAAATA 28044 30 100.0 37 NNNNNNNNNN .............................. TTTTTTTGCCCGTTTTTTCTTTTCCCTCACCGCTTTT 28111 30 100.0 38 NNNNNNNNNN .............................. AGAATCTATAAGGGATTGAAAGGTCAAGGGTATACTAT 28179 30 100.0 37 NNNNNNNNNN .............................. ACGAACCTCTTTGATCGTAAAAATTTCAATCATCTCT 28246 30 100.0 39 NNNNNNNNNN .............................. CTCCTATGCGGTCATTAGACCCCCGCCGGGGGCCGGCAG 28315 30 100.0 38 NNNNNNNNNN .............................. TGAGTTGTTTAGTCTAACTCTTACACCATCAGAAATAA 28383 30 100.0 38 NNNNNNNNNN .............................. ACAAATTAGTCAGAACCCCCCGCAATGAAAAATTTTTG 28451 30 100.0 35 NNNNNNNNNN .............................. GACAGCGTGGACACGGTGAACGGGCTCTGGAAGGA 28516 30 100.0 37 NNNNNNNNNN .............................. TGCGCTATTCTCGGGTCAAGCCTCCCAGCCTGAACCT 28583 30 100.0 36 NNNNNNNNNN .............................. AGCGGTCTGAGCCTGAGCCGTCGCTCCCTCAAGCGA 28649 30 100.0 38 NNNNNNNNNN .............................. TTATTCCTGATAGAACCTTTGCCACTGTTGAATTCCAG 28717 30 100.0 37 NNNNNNNNNN .............................. CTGTATTTCTTGCGGTAATACCCCCCAAATAGTTCCT 28784 30 100.0 36 NNNNNNNNNN .............................. CATACTTGCGGATACGGATCCAGTCAAAACTTGACT 28850 30 100.0 37 NNNNNNNNNN .............................. AACACTTTCCTTAACTCTGGGTCGTCTATGTTTTTGA 28917 30 100.0 38 NNNNNNNNNN ...................C.......... CTGGAGCGTTGGGCACAAGCATGGGGATGATTGTGGAG 28985 30 100.0 37 NNNNNNNNNN .............................. AGGGTTGGGTTCTCAATGGTGTATGGAGCGTTTCTTA 29052 30 100.0 38 NNNNNNNNNN .............................. CTATTAAACGCAATCCGCTCAGCCAAACATCACCCCTC 29120 30 100.0 37 NNNNNNNNNN .............................. TGATGGAGTAGATGAAATTCCTGGGGTGTCTTGGGAA 29187 30 100.0 37 NNNNNNNNNN .............................. GGTCTCATCTCGTGCAGCCTTTCTTCCCTCAACCCAC 29254 30 100.0 38 NNNNNNNNNN .............................. GGAGCTAGAATTGATGAAGGAGGTTGCTCAAGTAGTGC 29322 30 100.0 37 NNNNNNNNNN .............................. CACAAAGTTCTTCCATTCTACTAGTCCAGCTCTCTGT 29389 30 100.0 37 NNNNNNNNNN .............................. CTGTCTCCCTAAGAGCATACAATCCTCTGTACTCTAT 29456 30 100.0 38 NNNNNNNNNN .............................. GGAGTAGAAATGCCCAAATTCCCCTTAGGGACAAGATG 29524 30 100.0 40 NNNNNNNNNN .............................. CACCACCACGATGAAGGTACCGTTCTCAACGTCTACTTCA 29594 30 100.0 37 NNNNNNNNNN .............................. AATCAACCCCAAACCTTGCAAGGGTTGCCTCAACTGG 29661 30 100.0 38 NNNNNNNNNN .............................. AACTTCCTCTCCAACTCCCTCACCTCCTCATCCGACAA 29729 30 100.0 49 NNNNNNNNNN .............................. ACTGGATTGAGAGCAACTTGTCGAATTATGTCGTCAAGCTCGTCATTGA 29808 30 100.0 42 NNNNNNNNNN .............................. GATAATGCTAGGTTATTATATAGGTATAAGGCAAGGTGTCCA 29880 30 100.0 42 NNNNNNNNNN .............................. GTTTCCAAGCCATTCCAACCACCCCACATGTGTTGTTTTCAT 29952 30 100.0 40 NNNNNNNNNN .............................. TTTGTGATAGTGTTCTTTGCAACGAAGAGCTTGCTGGTCA 30022 30 100.0 37 NNNNNNNNNN .............................. GAACATTGTCCCCTCCTCCAAACAGTTTTTCATGTCT 30089 30 100.0 37 NNNNNNNNNN .............................. TAGAGTGCGGCGATTATTTTGGTTCTCAGCGTTGCTC 30156 30 100.0 37 NNNNNNNNNN .............................. TCAGCAGTTACGTCGTTCTTCCAGGTGAGAATACCAT 30223 30 100.0 49 NNNNNNNNNN .............................. AATAATCAGCAAAATCACGGGACATAGAAGGCTAGACTACATCCTACAC 30302 30 100.0 39 NNNNNNNNNN .............................. AGAGAATCTGGTAAGGAGACAGTAAACTGATCATGCAAT 30371 30 100.0 44 NNNNNNNNNN .............................. GAGTTTCCAAGATGAGTGCCCCGAGCCGGGGGCTCGGGGCATGG 30445 30 100.0 46 NNNNNNNNNN T.C.A.TA.GA................... AGAGGCCCCCACATCTGATTTAATCTGAGATGGAACTTCCACAATT 30521 30 100.0 38 NNNNNNNNNN .............................. ACGGTTGGCCTTGATACACTGGCCAAAAGAAATCTACG 30589 30 100.0 1 NNNNNNNNNN .............C....ATA..A.TG..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 52 30 38 GTTCCAATAAGACTAAAATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [454,195] Score: 0.18/0.18 # # Final direction: F [5.59,0.27 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 260714 30 100.0 39 AAAGCCCCCT .............................. TGTTCATCGCACTTCTTCTTCTGACTCTGCTCCACTTAG 260783 30 100.0 37 CTCCACTTAG .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 260850 30 100.0 37 AACATAAACA .............................. TTTCAATAAGGAGTTTCAAATGGCTCGATGGAATTAT 260917 30 100.0 42 ATGGAATTAT .............................. AGAACCTCCGCAATCTCCTTTGGAGAAAGGCCCTTCTTGAGA 260989 30 100.0 38 CTTCTTGAGA .............................. CTTCTTCGAAGTCGTAGTTTAGTGTGTCAAGATATTCT 261057 30 100.0 37 AAGATATTCT .............................. TTCTAGAAGTTCTCTTGCGAGAGCCAAGAGCGCGGCT 261124 30 100.0 37 GAGCGCGGCT .............................. GTGTACTTAAGAATTTCTTTCATAACTTTTCTGAAGA 261191 30 100.0 38 TTTCTGAAGA .............................. ACATAAGAGACGGAGAGCTTGTTATCTGGAAAGCAAAT 261259 30 100.0 43 GAAAGCAAAT .............................. AGTTATAACAAACCAGCATGACCCGCTCTCGGCTGAGTGGCAG 261332 30 100.0 37 TGAGTGGCAG .............................. CTACCATGGCCATCACCAATAATTAATTGTAAGTTAG 261399 30 100.0 36 TGTAAGTTAG .............................. ATTTGCTGACAAGCCATCGCAAAATTCTTCTGTTTT 261465 30 100.0 37 CTTCTGTTTT .............................. AACTCCACGACAGCATAAGGGACATTTACCATCGTAT 261532 30 100.0 ACCATCGTAT .............................. TTTTTGTGCT ========== ====== ====== ====== ========== ============================== 13 30 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [476,769] Score: 0/0.18 # # Final direction: F [5,0 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 261600 30 100.0 49 GGTAAAACTA .............................. GGGGCTGCGGGCCGGCTCACACCCCGAGCTCCCGGCTCGGGGTGCTCAT 261679 30 100.0 37 GGGTGCTCAT .............................. TCCAACATGGTTAACTTCCATCCTCTTAAAAGGAACT 261746 30 100.0 37 AAAAGGAACT .............................. GTAAGGTATTCTTCATAGACACCGCTCTGCATAACGT 261813 30 100.0 37 TGCATAACGT .............................. TTGAGGCTGGAGAGGGCTTCTTTGTTACTACTTGCGT 261880 30 100.0 37 CTACTTGCGT .............................. TTAACTCGTTTAGTTTTATGTTCATGTTCCACACTAA 261947 30 100.0 39 TCCACACTAA .............................. CTAATTTACGCTTTAGCTCGTGATCAACCCTAATCCCTA 262016 30 100.0 CTAATCCCTA .............................. ACACTCATGT ========== ====== ====== ====== ========== ============================== 7 30 39 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1362,285] Score: 0.18/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5646455 36 100.0 36 TCGCTATCGG .................................... GAGAGACTGGAAACAATTTCTATAGCGATGTCGGAT 5646527 36 100.0 37 GATGTCGGAT .................................... TCAATCATCTTTGCATTATATCCTGAAATTACAAGAT 5646600 36 100.0 32 ATTACAAGAT .................................... CTCCCTTAGCCACTCTAGGATTTGTGACTGTT 5646668 36 100.0 35 TGTGACTGTT .................................... ATGATTATCGAGGAATCTCGAAAATAGGACGTCGA 5646739 36 100.0 39 AGGACGTCGA .................................... AAGCGACCATCGCTTTTTGCACGAACAGCAGATGGAACG 5646814 36 100.0 37 AGATGGAACG .................................... TCCTGCTCCAAGCATTAGTCCTTCGGAGATTAAAAAC 5646887 36 100.0 37 GATTAAAAAC .................................... TAACTACTGCAAGCGTTGTGCAAGCAGCAATACCTGC 5646960 36 100.0 45 CAATACCTGC .................................... TGCACATTGATATAAACGAAGCTAAAAAAGCCTCTACCAATATAA 5647041 36 100.0 33 ACCAATATAA .................................... TCTTGCATACAAAGCTGCATTTCTAGATGACAA 5647110 36 100.0 TAGATGACAA .................................... AGTTCACTTC ========== ====== ====== ====== ========== ==================================== 10 36 36 GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [663,381] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 312405 30 100.0 37 AAAGCCCCCT .............................. GAATGTTGCTCAATGCAAAGGGCTCACCGCTGCTGGT 312472 30 100.0 35 CGCTGCTGGT .............................. TTGAGTTGAAGCGCCACTCTTTGAAGCCTATCAGA 312537 30 100.0 37 GCCTATCAGA .............................. GCTTCAGGTCTTCAATATTCAATCCCGGTCCCTTTCA 312604 30 100.0 37 GTCCCTTTCA .............................. TCGGGTCCCTTGGAGTTCCGAACGGGCTCCCGAGGCT 312671 30 100.0 38 TCCCGAGGCT .............................. TTGATTCCCTTATAGATGTTCGTTTTCCACACAACTAA 312739 30 100.0 39 ACACAACTAA .............................. CTGTATATCCTTTCGTTTGTCTTCCACACTTTCAACTCT 312808 30 100.0 38 TTTCAACTCT .............................. TATGTTCGTTCTCGTTCACTGTTATTCTCTTTTGTTCA 312876 30 100.0 37 CTTTTGTTCA .............................. AAAAACTAAAAAAAGAAGAGGTGGTGGTGAAGAATGT 312943 30 100.0 38 TGAAGAATGT .............................. CTTTTCCTGCTCCTGCTTAACAAAAGAATTGTTGGCTT 313011 30 100.0 36 TTGTTGGCTT .............................. GGAACCACAGACCCAATCGCAGTAATTTGGGTTGAC 313077 30 100.0 37 TTGGGTTGAC .............................. TCATGTATTTTTCTTCTCCCAAATCCAGGGGCTCCCA 313144 30 100.0 37 GGGGCTCCCA .............................. TCTCAATTGGGGAGTTGCTTTAATGGCTTTTGGAGTG 313211 30 100.0 39 TTTTGGAGTG .............................. AAGATAATCGCTCAACAGTTTCAATGCTATACTTGTCAA 313280 30 100.0 38 TACTTGTCAA .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGTTT 313348 30 100.0 47 GTGTTTGTTT .............................. GATTTCAGAGAACAACGGTGAATTTAAGAATTTCCTGACTTTCAATT 313425 30 100.0 39 ACTTTCAATT .............................. TTGCTGATTACGAAGGCATATCCTTCAATTGTTGCTCGT 313494 30 100.0 39 TGTTGCTCGT .............................. ATAGACTTCCCTTGTGTACTTTAGTAGTTCTGCAAGTAA 313563 30 100.0 43 CTGCAAGTAA .............................. GAAGGATAGCAGGATCTAATGTAATTCTCGCGACATCTTTAAA 313636 30 100.0 39 CATCTTTAAA .............................. GATGAGGAGTGAAAGTTCTTGCAAAGCCCTTTCCAAAAG 313705 30 100.0 36 TTTCCAAAAG .............................. AGTATCGCTACTGTTTTCATGCACCACTGCACCCAT 313771 30 96.7 36 CTGCACCCAT ..............G............... AATCAATCCGAGAATCGAATTTTCCTATACGCTTTT 313837 30 100.0 35 ATACGCTTTT .............................. TTTGTTTTTGCTCCTGTGTCTTGTGGTGATAAAAT 313902 30 96.7 GTGATAAAAT ...A.......................... CAAAAGAATT ========== ====== ====== ====== ========== ============================== 23 30 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [509,265] Score: 0/0.18 # # Final direction: F [5.41,0.27 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5654133 37 100.0 34 GAGCCGAGCG ..................................... TTTTTCCTGAGTTACCTGTACCCGCTTGATATAC 5654204 37 100.0 34 CTTGATATAC ..................................... CTTCTAGCCCTTCTGCTAGTGCTATCCAGTTATT 5654275 37 100.0 36 TCCAGTTATT ..................................... CTATTAGGAATCCTAGCAGCGCTGCCACCACTTAAA 5654348 37 97.3 ACCACTTAAA ................................A.... GACTCTGGTG ========== ====== ====== ====== ========== ===================================== 4 37 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [346,216] Score: 0/0.18 # # Final direction: F [4.91,0 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 623119 30 100.0 38 TGAAAGCTTT .............................. AGGTGGTTAGACGGGTGGTTTGCTGGAGACTTAGGACT 623187 30 100.0 38 ACTTAGGACT .............................. GCAGTCCAGTACAAAGGCACAATTCTCGGTGGAATACT 623255 30 100.0 38 GTGGAATACT .............................. CTCCTTACAATAAGCTCACCGTTGCTGATGTTGTCGGC 623323 30 100.0 39 TGTTGTCGGC .............................. TTGTAAGGAGACCAAGACCACAGGTTTATAGGGGACTCA 623392 30 100.0 35 AGGGGACTCA .............................. ATGGTGATTATGGCGACACTATTGAGTGGTTCGTT 623457 30 100.0 35 GTGGTTCGTT .............................. AGCTGAGAAGGTGTCGAGGGATGTGAAGGCTAGGT 623522 30 100.0 37 AAGGCTAGGT .............................. GCGGGAGCAAGGTGTTGCAAACCTTGATAGAGTTCCA 623589 30 100.0 38 TAGAGTTCCA .............................. TGGGCATTGATTTCGACATTGCAAAAATTTTTCATTGC 623657 30 100.0 42 TTTTCATTGC .............................. TCGGAGTTACCGATTGCTGAAGTAAATGAGAGATTCAAGATA 623729 30 100.0 37 ATTCAAGATA .............................. GTTGTTAATGTATTCGTTGAGGCAGGGAAGTATAAGG 623796 30 100.0 38 AAGTATAAGG .............................. GACTTTTGTATTACAAAATCAGCGTAGTTTACTATCAG 623864 30 100.0 36 TTACTATCAG .............................. ACAAACACAGAAAAGAAGCCAAAGTTATTGAGATTA 623930 30 100.0 38 ATTGAGATTA .............................. TAGCTAATGTCCATGAGAGTGTGTGAAAAGCTAGTGAA 623998 30 100.0 38 AGCTAGTGAA .............................. GCCAAGCTAGTTATTGATGTGTTGCATACCGTATACAC 624066 30 100.0 38 CCGTATACAC .............................. GCCAAGCTAGTTATTGATGTGTTGCATACCGTATACAC 624134 30 100.0 38 CCGTATACAC .............................. TATTCATGGCATGTGGCAATGTTTCTTGATAGGGCACT 624202 30 100.0 40 ATAGGGCACT .............................. CTTTCTTTGCATCTTTTGTATATCCCTTAGACCCAAATCT 624272 30 100.0 36 ACCCAAATCT .............................. TTAATTCTTGGGAAAAACAGGGATTATATTATCCAC 624338 30 100.0 38 TATTATCCAC .............................. AGGAACGGTCTCCAAGAGGACTTGGCGAATTACGTGAC 624406 30 100.0 37 ATTACGTGAC .............................. TATTTTGTCCTACTTTGTATGACAATGTCTTATGTGG 624473 30 100.0 38 TCTTATGTGG .............................. ATATAATAGGTATGTAGATAAATCACCCTCTGAGAAGG 624541 30 100.0 38 TCTGAGAAGG .............................. CGAATTCGATAGATTCGAGAAGCTTGTAAGGGTAGAGA 624609 30 100.0 37 AGGGTAGAGA .............................. CTATTATATATACAGATGTCTTGCATTATGATGCTTA 624676 30 100.0 37 ATGATGCTTA .............................. CGCTATGATATGCTGACGGATGAGGAGTATGCTGAGA 624743 30 100.0 38 TATGCTGAGA .............................. TGAAAATAGTGGACGTCATCCCTCCAAGCCAAGTGCCT 624811 30 100.0 37 CCAAGTGCCT .............................. TATGACTCTGACACAGGTACTAAAATCGAGGAGTTCC 624878 30 100.0 37 GAGGAGTTCC .............................. CACAAGCACTAGTCCTGCTAGCGTTTTCAGGAGTGGT 624945 30 100.0 36 CAGGAGTGGT .............................. ACGAGCATTAGGACTGTGTTATTGTTTTGATCTTTT 625011 30 100.0 37 TTGATCTTTT .............................. GTGAGCGCCCTCAAGTACTACGTGAACCATTCCCCTT 625078 30 100.0 39 CATTCCCCTT .............................. CTCAATGCAAAGGGCTCACCGCTGCTGGTGAGTATGGTC 625147 30 100.0 GAGTATGGTC .............................. AGGGGGCTTT ========== ====== ====== ====== ========== ============================== 31 30 37 CTTTCAATTCTATTTTGGTCTTATTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [122,539] Score: 0.18/0.18 # # Final direction: R [0.27,5.18 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 695937 30 100.0 37 NNNNNNNNNN .............................. AGTGAAGAATTTGACGTACAAATGTCCTTAGTGGAAC 696004 30 100.0 37 NNNNNNNNNN .............................. TGATGTAGATCTCTGTACCTTTCGGGACCTGTAGGTC 696071 30 100.0 39 NNNNNNNNNN .............................. CAGTTCTACTTTGATAAGACTGTGGTGGTTAATGGTAAA 696140 30 100.0 37 NNNNNNNNNN .............................. CTCTTATGGTGAAGCTTTCGACATTTTCTTTGGATGT 696207 30 100.0 37 NNNNNNNNNN .............................. CGTCTTCTCTGAGATTCTTGGCTCGTTCTAGAGCCAT 696274 30 100.0 37 NNNNNNNNNN .............................. GAGAGTATCAGGAGCTTTCTGACCTCCTTATACAGCT 696341 30 100.0 38 NNNNNNNNNN .............................. GACAAAGAACTCCCTAGCGTCCCTCCCCGTGTACTTGA 696409 30 100.0 37 NNNNNNNNNN .............................. CCACACTTCTATCTCAGCACCCCCAAACGTGAAACTG 696476 30 100.0 36 NNNNNNNNNN .............................. TTCTGCCGTCCCTTTTCTCGACGAACCTCATACCGA 696542 30 100.0 39 NNNNNNNNNN .............................. TTGAGGAGATGCTTACTGCGGTTAAAAAGGACATTGCAG 696611 30 100.0 37 NNNNNNNNNN .............................. GGTGCTTGAGCTCGCTAGTGCCCTCCTCCTGGGCTAT 696678 30 100.0 38 NNNNNNNNNN .............................. TAATGCTGTACAGGATTGACAAGGAGGCTTACGCTTCT 696746 30 100.0 37 NNNNNNNNNN .............................. TACTATAGGCGGAACTCCCTGCAATGAAAAATTTTTG 696813 30 100.0 37 NNNNNNNNNN .............................. GCACCTTCTTCACCATCGCCGTCTGGATTGCTGGTAG 696880 30 100.0 37 NNNNNNNNNN .............................. TGTTTTCGAATATTGTTACTTCTTGTGTATCTCTGAA 696947 30 100.0 37 NNNNNNNNNN .............................. ATTCACTGGGTTCTTCAGAAAGTTCATAAATTCACCG 697014 30 100.0 34 NNNNNNNNNN .............................. CCTTCTTCTTTTTAAATTTTTTAATTTTCATTAA 697078 30 100.0 41 NNNNNNNNNN .............................. TGATCTAGGCGTCGGGTAATTCTGTAAGGTCTCTGGCTCAT 697149 30 100.0 43 NNNNNNNNNN .............................. ATGACTATCAGGATGATAATCGTTTTTTTATGCTCGCTTACAA 697222 30 100.0 37 NNNNNNNNNN .............................. ACAGGCAATTAGAAACTCTTTCAAAAACGCAGTTCAG 697289 30 100.0 37 NNNNNNNNNN .............................. TAGTGTAACAACATCATATGGAAAGTCTCCCACGTTG 697356 30 100.0 38 NNNNNNNNNN .............................. GGGTTTACTCCGAACGGTGTTCTGCTAACTGATATAGT 697424 30 100.0 36 NNNNNNNNNN .............................. ACTTAGCCACCTCCGAGATGTTTTCGTAATAGTTAT 697490 30 100.0 37 NNNNNNNNNN .............................. TTGTAGGCTCGTGGACTTGGCTTCCACACAACTAATT 697557 30 100.0 37 NNNNNNNNNN .............................. CTTCTTCTCTTACAAAGTCTTCAATGATAGTAAATAT 697624 30 100.0 38 NNNNNNNNNN .............................. TGGGGTCTCGTCGCAATCGGTGCAGTATTCCTAAGCCT 697692 30 100.0 36 NNNNNNNNNN .............................. GCAATTGGGCTTTTTGTAGCTGGAATCTTGGGTGAT 697758 30 100.0 36 NNNNNNNNNN .............................. AAAGATTCTGATTCCCGAAAGGCTTTTTCCGACACC 697824 30 100.0 37 NNNNNNNNNN .............................. TCACCATTACCTCCTAATCCAATCATCTAACATTGAA 697891 30 100.0 38 NNNNNNNNNN .............................. TAACTCTAATGTTTCATCGACTAACATGTCAATTTCAT 697959 30 100.0 38 NNNNNNNNNN .............................. TTGGATTTGCTACTCTCACGTATAGGGTCCCTACCTCT 698027 30 100.0 35 NNNNNNNNNN .............................. TGATATAGTCGTCTGCTCCTGATACCCAATATATG 698092 30 100.0 37 NNNNNNNNNN .............................. AGGAGGCTCTAGATGAGCTAATCAGCGCAGAAGGTGG 698159 30 100.0 35 NNNNNNNNNN .............................. ACCACCCCTGGGAAAGGCCTTATGGTACTACCTAA 698224 30 100.0 35 NNNNNNNNNN .............................. CTTAAAAATACTACCCTCAACAATCAATATTGCAA 698289 30 100.0 36 NNNNNNNNNN .............................. AACCTCCCTAAGCCTGTCCTTCCAAGTGAACTTATA 698355 30 100.0 37 NNNNNNNNNN .............................. CTCTCTTACTTCTATAAGACTGAAACTTCACACCTAA 698422 30 100.0 38 NNNNNNNNNN .............................. TAACGCTTATTTCACCCTGCTTAACACTCTTAACCCCA 698490 30 100.0 37 NNNNNNNNNN .............................. ACATCCCTACATAATAATACGCCACTTGTCCAAAAAC 698557 30 100.0 36 NNNNNNNNNN .............................. ATCTCCATCATACCAATGCTGTGCAAAATCAATCTT 698623 30 100.0 40 NNNNNNNNNN .............................. TTGAAAAGGTTGGGTGATAGGGTTAAGGAGGAGTTAGTGA 698693 30 100.0 39 NNNNNNNNNN .............................. TAAACTTAAGCTGGGATGGGCTATATACAAAGACAGACA 698762 30 100.0 38 NNNNNNNNNN .............................. GAGATAGAGCTGGTTTTACGTTATGGCAAAATCTTAGA 698830 30 100.0 36 NNNNNNNNNN .............................. TGGTTCATACAATTCTGGAAGGTTGTAGAAACCAAC 698896 30 100.0 37 NNNNNNNNNN ...C.......................... GATGCCCAAACCTGAATATACCCCGCACTAACTAAGT 698963 30 100.0 1 NNNNNNNNNN ...C...........C..A........... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 46 30 37 GTTACAATAAGACTAAAATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [62,88] Score: 0/0.18 # # Final direction: F [5.68,0 Confidence: HIGH] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1898967 25 100.0 41 CAAAAGATGT ......................... ATTATGAGGCCCTTAATTCTCGCCGGGCCTCCAAAGGCGGG 1899033 25 100.0 40 CAAAGGCGGG ......................... ACAGTGCTCTATATCGAGGGACGCGGTAAACTGAAGTTAA 1899098 25 100.0 41 CTGAAGTTAA ......................... TACTCCTATTGAATTTCTGCCGAGCAGTTTTGCCTCTATGA 1899164 25 100.0 41 GCCTCTATGA ......................... ATATTTATCTTGTTTGCGCTCGCATGAGTAGAGTGGAAACT 1899230 25 100.0 40 AGTGGAAACT ......................... TGGTGTAGATAACAGAGAATTATTAGATACGCTCTTTGTT 1899295 25 100.0 41 GCTCTTTGTT ......................... ATATCAATGGCAGGAGGCCGAGCAACATGACTCCTATCGCC 1899361 25 100.0 41 TCCTATCGCC ......................... ATCAGGCCCGACAGACTCATAGTCGTAACGGACAAATACCT 1899427 25 100.0 43 ACAAATACCT ......................... ATAGTGGTGGAAAAGTGATTGTAGTCACTTGGGACGCAGAAGT 1899495 25 100.0 39 ACGCAGAAGT ......................... CTTATTCACTGATATCCGCTTAAGTTACCACGAGCCAGC 1899559 25 100.0 46 ACGAGCCAGC ......................... CAAGCTGGCCGGCAGGCACCCTGCGGCCTTGGATAGAATTATACAA 1899630 25 100.0 AATTATACAA ......................... GGCTTGCGTT ========== ====== ====== ====== ========== ========================= 11 25 41 GTTTCAACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [398,254] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 39813 25 96.0 43 AAAAGGGATT .........-............... TGGAAGAACTGCAGCGGATATACGGCCCAGTCGTTAATGAGGC 39881 25 96.0 41 TTAATGAGGC .....................T... CTCATTAATAAAATTGATGATACTTTCAGCCATAAGAGAAA 39947 25 100.0 45 ATAAGAGAAA ......................... ACATGCGTATGGCGGTAGGCGACGTGTAGAATATAGTGAAAATGG 40017 25 100.0 40 GTGAAAATGG ......................... GGGGTAAGTGGTTTGACAAGGAGCAAGCAGTAGAACTGCT 40082 25 100.0 40 TAGAACTGCT ......................... GGTCGGCCCAATTACTGAACAAATAGTCTGTATGGTTTAA 40147 25 100.0 43 TATGGTTTAA ......................... GTAATTAAATATTAATTACGACTTGTGCACACACATGGAGAGA 40215 25 100.0 40 CATGGAGAGA ......................... GGCGTTGGCAACGCTGGACAGTACGGTGGCGGTGTTGTCA 40280 25 100.0 43 GGTGTTGTCA ......................... ACACGGCATTTCCAACACCGAGGGTGTGGGAGTGGATAGCCGT 40348 25 100.0 40 GGATAGCCGT ......................... ATATTTGGAAAAATCGATAAGGAAAGACTATTGGAACTTG 40413 25 100.0 44 TTGGAACTTG ......................... AAGGTCTCAGACCGTCATTTGATGCTTTGGTTAGTTTTGAAGCC 40482 25 100.0 44 TTTTGAAGCC ......................... CAGGAGGGTTGTGGGGTGCACATGACGTACACGTCTGTGATGCT 40551 25 100.0 44 CTGTGATGCT ......................... TGGAGAATTGGCTTCTTAGCTGTTTCTACGCAGCGCCTTTCTGG 40620 25 100.0 38 GCCTTTCTGG ......................... ACCACTGCTAGAACAATGGAAAAATGGTGGCAAGTTAA 40683 25 100.0 45 GGCAAGTTAA ......................... GCAAGCGGAAAGGGACACGGTATACGCCGGCTGTACCGAGGTCAT 40753 25 100.0 CCGAGGTCAT ......................... GGCTTGCGTG ========== ====== ====== ====== ========== ========================= 15 25 42 GTTTCAACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [527,229] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 45503 25 100.0 43 CACGCAAGCC ......................... GGTGAATATACAGACAATATATCGAACGATGGCCGCAATCCAA 45571 25 100.0 43 CGCAATCCAA ......................... TGTGAATACGCTCAGCTTGGCGTGCATCAGTCTCTTCAGAGAT 45639 25 100.0 43 CTTCAGAGAT ......................... CTGAAAAAGTTCCTGAACGCCGGGTTTTTCGTCGGGACCTTCC 45707 25 100.0 43 GGGACCTTCC ......................... AACACTTTCAACCTAACAGTTATCCACTCCGCGATGTCGCTTC 45775 25 100.0 42 ATGTCGCTTC ......................... ATCGTGAACTTGGCCCTAAGCTTAGAGAATACATCACTCCAA 45842 25 100.0 42 ATCACTCCAA ......................... TATATCCATATCAGCCTCCGGCCCACCGTTAGCTTGATGTCG 45909 25 100.0 44 CTTGATGTCG ......................... TTATCGAAATACATCAAACCGTCGTGCACGTGGGCCGCACACCG 45978 25 100.0 42 CCGCACACCG ......................... ATATACGTTTCACCCGCGCCACGCGTCTGTACTAATGCCGCG 46045 25 100.0 40 TAATGCCGCG ......................... GTGCGGCTTAAACGAATACGGAAAGACAAAGCTATTCTCG 46110 25 100.0 44 GCTATTCTCG ......................... AATGTATCTGTACAGACCCCGCATGCATAAAGTATCAAGTACAA 46179 25 100.0 46 TCAAGTACAA ......................... ATAGTCAGAAGAATAATACAACTATGACATTACTGGTAATGCCAAC 46250 25 100.0 45 TAATGCCAAC ......................... GAGGCGGAAGGTTGCGGCATATGGAATAATTGAATGTAATACCCG 46320 25 100.0 43 GTAATACCCG ......................... TTCCCGAAGTTGCCTGAAAGCGATGTGATCCGCGGCGCGTCTA 46388 25 100.0 44 GGCGCGTCTA ......................... CCATGGCCCGCAAAAAGAATATTTACGCTGGGCCTTCCTCTTGC 46457 25 100.0 44 TTCCTCTTGC ......................... TGTCCACTGTCTGTTTTGCAAATCTTCTACTATATCCTGGTAAG 46526 25 100.0 42 TCCTGGTAAG ......................... ATTGTCGCGCTGAAGGCGCCACAGCGCGGCACCGATGTTCAA 46593 25 100.0 45 CGATGTTCAA ......................... ACTACATGTAAATGACTGCGTGTTCATAGTGGCAACCTGTAGCGA 46663 25 100.0 CCTGTAGCGA ......................... GTTTAGGTCG ========== ====== ====== ====== ========== ========================= 18 25 43 CCAGAAATCAAAAGATAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [268,14] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 591745 25 100.0 40 TTATCATGTT ......................... GAGGGAGGAGAGGAGTGGCAGATTACCACAACACTTTGCG 591810 25 100.0 42 ACACTTTGCG ......................... TGTAAAACTGCCCCCGGCCCCGGCCTCCACAACATATACATT 591877 25 100.0 42 CATATACATT ......................... GGTTATAGAAGCAAAAATAGTTGAAATACCGAGGATATGTTA 591944 25 100.0 37 GGATATGTTA ......................... TTAGCGCTTGGCTGGAAGAAGAGTTAGAAGAATTAAA 592006 25 100.0 42 AAGAATTAAA ......................... ATAGGGCTATTACAGAGAATATCTGGAAGAAGCTTAGCAACA 592073 25 100.0 37 CTTAGCAACA ......................... TATGGCTCTTCTTAAGTTATATTTTTGTAAAGAGAAA 592135 25 100.0 36 TAAAGAGAAA ......................... CAGCAGAGGCATTCTATTGGGATAGCGTAAAACAAT 592196 25 100.0 GTAAAACAAT ......................... TGTGGGTTTT ========== ====== ====== ====== ========== ========================= 8 25 39 GTTTCAATTCTTTTGTAGATTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [301,802] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1091157 29 93.1 41 CCTATGTTCT -........................A... CTACGGTTAAAAACCCTGCAGATTCTCCCAGCATAGTCCCC 1091227 29 96.6 37 CATAGTCCCC .........................T... CCAGTAGAGTTCACGACGAGTGGGTGCAGTATTCTCG 1091293 29 96.6 38 AGTATTCTCG .........................T... TTAAGGTTGAGACGGAGAAGGCGTTTCTTGTATCTTTA 1091360 29 96.6 38 TGTATCTTTA .........................T... CCCGAAGACGTTCTCAAAGATTTAAAAAGAGATTTGCG 1091427 29 100.0 37 GAGATTTGCG ............................. GTAACAAAGGTGGGCGTTTCTAGAGAGGTTGGGCAAG 1091493 29 100.0 39 GTTGGGCAAG ............................. GGGCTACGAGGACGCCCTGAGGATTATGAAAGAGGTCCT 1091561 29 100.0 38 AAGAGGTCCT ............................. CGGAAGCTCATAGAGTTCAATGGAAGGTTGAAGCTCAT 1091628 29 100.0 39 TGAAGCTCAT ............................. GTTTGGGCGTATGGTGCCTTAGTGCACGAGTTCCACCGT 1091696 29 100.0 38 GTTCCACCGT ............................. TTTTCACGTAGTTTATCACGTCGTCTGCATTTCTTCCT 1091763 29 100.0 38 ATTTCTTCCT ............................. TCAAAGACTGTGTGTGGAGCAGCTATTTGCTTCGGCAT 1091830 29 100.0 GCTTCGGCAT ............................. AGTGGGCTTT ========== ====== ====== ====== ========== ============================= 11 29 38 CTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [203,479] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_003454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1836310 30 100.0 37 NNNNNNNNNN T.GGGGTCAG..CAT.TT............ TTATTCTTTCCCTGCAATCATTTATATCTTGTTCGAT 1836377 30 100.0 35 NNNNNNNNNN .............................. TTCTATAAATTTCAAATGTCTTACTATCTTTCCAT 1836442 30 100.0 36 NNNNNNNNNN .............................. TAAAAAACTCCTATCAGAAAAATTACCTTTTTTAAT 1836508 30 100.0 35 NNNNNNNNNN .............................. GAAGTGCTTTTGTAGAATATTTAAAGTATTGAAAA 1836573 30 100.0 35 NNNNNNNNNN .............................. CTTAGAACAAAGAGCAGAATTATTAAAAAATTCTC 1836638 30 100.0 35 NNNNNNNNNN .............................. TTTATCAGAAGCTTTTGAATTACCAGTTGTAGTAT 1836703 30 100.0 36 NNNNNNNNNN .............................. AAATTGAACAGGAAAATTTAAAAAATAAAGAAAAAA 1836769 30 100.0 38 NNNNNNNNNN .............................. TTGCTCTGTATCTTTTATTAGCTTTGTTTTGTTGTTCC 1836837 30 100.0 35 NNNNNNNNNN .............................. ATATAGTATGTATCATCAATTAAATACGCTTCTTC 1836902 30 100.0 39 NNNNNNNNNN .............................. GAGAACTTACTACAAAGGTGGGAATCCAGTCAAAAAAAT 1836971 30 100.0 36 NNNNNNNNNN .............................. AAGAGATTTTTTATTTGAATTAGCTAATGAAGCTAC 1837037 30 100.0 36 NNNNNNNNNN .............................. TAGATTATTGACTTCATTTAATCCTGGAATAGTTAC 1837103 30 100.0 38 NNNNNNNNNN .............................. TAAAAAACTTCTTTGAAATTATAACCACTGTCAGATTT 1837171 30 100.0 39 NNNNNNNNNN .............................. GAATACTTGAATCTTTTAACTTAAACATCTGTAATACTT 1837240 30 100.0 34 NNNNNNNNNN .............................. CTGTTGATTCAAATAATAAATTAGTTGGAAGTAG 1837304 30 100.0 38 NNNNNNNNNN .............................. TCAAAAATACATTATGTCAATGAATTAACTCAAAACTC 1837372 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 17 30 36 ATTTAAATTCTAATATAGAAATACATAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:90.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [519,196] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1362696 36 100.0 58 ACGTCATTGA .................................... AACGTGTGTTGGAAGAGCATCTGGGACAACATAGAGGCAGACTTAAGGTGCAGGATTA 1362790 36 100.0 53 TGCAGGATTA .................................... TTTTGCGGAGTAATCCCATGTTGGTTGTCGGTGACCGTAGAGTGCGGGATAGA 1362879 36 100.0 46 GCGGGATAGA .................................... CCCGCGGACAAGGCTTCGGTCTTGTGGAGGGTCTATTGGAGCAGTA 1362961 36 100.0 51 TGGAGCAGTA .................................... GGGTTGCAGTTACACGGCGTATATCATGGCGTTCCCAGTGGAGTGGTCAGT 1363048 36 100.0 53 AGTGGTCAGT .................................... ACTCGGTGGACACAGAGCTCGCCGCCGCGCTATCGGCACTATGGGAATCAGTC 1363137 36 100.0 51 GGAATCAGTC .................................... GTGTCCGGTTTGCGACTCTTAGGGGGATAACGACTTTCACTTCCGCGTCCT 1363224 36 100.0 63 TCCGCGTCCT .................................... CCGGCGCGTTAGGCCTCAGCAACGTGGAGAAAGCGATACTTTATGACGATGTCCTTAAGGAGC 1363323 36 100.0 60 CTTAAGGAGC .................................... AAGTATCACAGCCAGGGCACGGACGAGACAGCGTACTGAGAGGGGCCAGAGTAGCAACAA 1363419 36 100.0 GTAGCAACAA .................................... GGCGGGCGGT ========== ====== ====== ====== ========== ==================================== 9 36 54 GTTTCATTACCCATATTATTGCGGGTTAATTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.20,-5.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [365,1013] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1306914 36 100.0 70 ACCGCCTGCC .................................... GGTAATGAAACTAGTATAATCTCCGTTAATTCATCTGCTACCTCTGGTAGTCTCTGTATTTCCGCAAACG 1307020 36 100.0 54 TCCGCAAACG .................................... AACGCCTGGAGAAAAGCCTTCGGTAAACCCCTAACAGACACAGCCCTAAGACCC 1307110 36 100.0 60 CCTAAGACCC .................................... AATACCAGAACGTCTCACCCGCATGGAACTTCGGCTTCAGCGGAGTACCACACTCACAGA 1307206 36 100.0 55 CACTCACAGA .................................... CGCTGTGGATAAACGATTGTCCACCGTGATACATAGCCGTCTAACCCTTCTTCGT 1307297 36 100.0 65 CCTTCTTCGT .................................... CTGTCTTCGCTTCTGGCCTTACTGTCTTCGTGAATGTTCCAAGCTCCAGGTAGTCAACTATCATC 1307398 36 100.0 54 AACTATCATC .................................... TCTTGAGTAGGATACCGTTGATGATTGCCTCTCTCGTTTCCTTTGCCTCGTAGC 1307488 36 100.0 50 GCCTCGTAGC .................................... TGTGCTGGTGCTAAGTGAAAAGATTGCCACCCAATGCCCTAGATCTCTGA 1307574 36 94.4 AGATCTCTGA .......................C...........T CCCACTACC ========== ====== ====== ====== ========== ==================================== 8 36 58 CTCGCAATTAACCCGTAATAATATGGGTAATGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1087,412] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1297217 36 100.0 51 GTACAGTGCA .................................... TCTGTTGTATTGGTATTGGGATGTTCCATGTGACTTTTACTCTGGCGTATG 1297304 36 100.0 51 CTGGCGTATG .................................... AGACAAACTAGTAGCGTTCGCGAGATTCAAAGGAGATATCACGGTGTGTTC 1297391 36 100.0 61 CGGTGTGTTC .................................... TTTTGCAATCGATGATGCTTTTGCTAGAATTTCTTTCATTTCTGGGTCTAAATCTCTTAAT 1297488 36 100.0 58 ATCTCTTAAT .................................... CATGGACATAGACACGGACATAGACATGGACACGTCAACGGCTGTCGACATTCTAGCC 1297582 36 100.0 CATTCTAGCC .................................... GGCGGCCAGT ========== ====== ====== ====== ========== ==================================== 5 36 55 GTTTCATTACCCGTGTTATTACGGGTTAATTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [341,566] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1111465 36 100.0 57 AGGTCACTAG .................................... ATGCAGGCACAATGAGTTTGCGGACAAAGACGATAATGTATTGTTAAGAGTGTATAC 1111558 36 97.2 60 GAGTGTATAC ...................C................ TATGTTAGCTGGTCGAGGAAATTGTGGCGGTGTTAAACTCCGGAGAAACACGTCGAACCC 1111654 36 100.0 62 CGTCGAACCC .................................... CTCGCGATGCGTGTGCGGACCGCACCGTGCCCGCGTGCTATGACGGATCTCCTCTTCGCGAC 1111752 36 100.0 54 TCTTCGCGAC .................................... ACATGAGGTCCAGTTCCAGAAGCCTGAGCGGAAGCGCAAGGCGCTCGACCCGGA 1111842 36 100.0 49 TCGACCCGGA .................................... GGTCAAGGAAGTCTTCCCTTCACTGAAGGAAAAACTAGAGGATGACGAG 1111927 36 97.2 55 GGATGACGAG .......................A............ AACCTAACTTAGCATATGATGGTGGTTATAATTCAGATATTAACGCTAGCATATC 1112018 36 100.0 53 CTAGCATATC .................................... CAGACTGGGTAAGGGAGGACAGAGACGGGGAGGTGGAGACATGGGTCCTTAAT 1112107 36 100.0 55 GGTCCTTAAT .................................... GAGGGCAATGAGGAAGGAACAGCTGAGAGCTCGGGGTATCACCGAGCTAACACCG 1112198 36 100.0 52 GCTAACACCG .................................... TCGTAGGGGTAGTAGAAGAAGCATACGAAGGACTCATGGAATCCTGCAAAGA 1112286 36 100.0 56 CCTGCAAAGA .................................... CTAGCTGTGAAGGGAGTGTGTGTAGCGAGCCCCTGAGAAAAATAATCCGTTGGTTC 1112378 36 100.0 72 CCGTTGGTTC .................................... TGCTCGCCCGCTTCTTCCGCGAGACCCTGTATCATGACCGGGAAGAACGCGCTACCGCTTAGCGAGAAGAAC 1112486 36 100.0 CGAGAAGAAC .................................... GGCGGGCGGT ========== ====== ====== ====== ========== ==================================== 12 36 56 GTTTCATTACCCGTATTATTACGGGTTAATTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [996,904] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2369436 37 100.0 36 CTGCAAACAC ..................................... TTGCAGGGGTAATCATGACTATACAATTAAGAAACA 2369509 37 100.0 36 TTAAGAAACA ..................................... TGAATGCTGTAATAGCTGTACTTTTAATTTCCATTA 2369582 37 100.0 36 ATTTCCATTA ..................................... CGGTAACCATCACTTTTGAAATTTCCTCTTAACATT 2369655 37 100.0 TCTTAACATT ..................................... CAGGTCAAAC ========== ====== ====== ====== ========== ===================================== 4 37 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [855,270] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2378684 37 100.0 36 TTTTTGCCCT ..................................... CAAACCATTGCTTCTCTCCTTATTATGTGTATCAGG 2378757 37 100.0 36 GTGTATCAGG ..................................... AAAGATCTTATTTTGCCTAAAGGAATGTACTATCAA 2378830 37 100.0 36 GTACTATCAA ..................................... CCCGGCAACATATCCAGTTGTTGTAGATTTTTGAGT 2378903 37 100.0 37 ATTTTTGAGT ..................................... CTCCTTCGGGGCCTGTTGCGTACGACTTGAAATCCTT 2378977 37 100.0 35 TGAAATCCTT ..................................... AAAATTGAGCAATATAAATAAAATTGATATGTTTT 2379049 37 100.0 GATATGTTTT ..................................... CCAGCCGTTT ========== ====== ====== ====== ========== ===================================== 6 37 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [282,1474] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2379328 37 100.0 38 AAGCGTATAT ..................................... TCCGGAACTGGAAACCGTGTAATGGTAACCGATGACTA 2379403 37 100.0 36 CCGATGACTA ..................................... TCCTCGATTTGATCACAGCATTTCTTAACGTGATAC 2379476 37 100.0 39 AACGTGATAC ..................................... TAATCAAGCTCTTTTTGAGCCTGGTTCCCGGGTTCGAAT 2379552 37 100.0 36 GGGTTCGAAT ..................................... ATCTCTCAGGTTGGGATGATATCGCCGAAATACGGT 2379625 37 100.0 38 GAAATACGGT ..................................... TTACAACAGGGCTATGAAAAACACTTTGTACAGAAAGT 2379700 37 100.0 34 TACAGAAAGT ..................................... CTGAAGGCTTTCCCGGTAATCCCGAATTCAGCGT 2379771 37 100.0 36 AATTCAGCGT ..................................... ATATAAGCGTCTTTTCCTGTGTATGTGATCCACTTT 2379844 37 100.0 36 GATCCACTTT ..................................... CCTTGTTGGTAATTAGTACAATGTTACCAGTATCAG 2379917 37 100.0 38 CCAGTATCAG ..................................... ATTCCTCCAACTGCTTTTTTAGCTGGTCTTCTGGAACT 2379992 37 100.0 36 TTCTGGAACT ..................................... ACTCTAAAAGAAGAGCTTAATGAACTACGTATAGAA 2380065 37 100.0 35 ACGTATAGAA ..................................... TACCCAACTGTTCAAATTTCAAAGCCACTACGTGA 2380137 37 100.0 37 CACTACGTGA ..................................... ATATGCGTTCCTGGCTTCTATAACCTCATCAGTCAGG 2380211 37 100.0 38 ATCAGTCAGG ..................................... TATCTGGTGTTACAGGGGCTATAATTGATGTGAAAAAA 2380286 37 100.0 36 TGTGAAAAAA ..................................... AAAGATTCCAGACGGCACCATTGAATGTGTCGAAGT 2380359 37 100.0 36 GTGTCGAAGT ..................................... CAATGTTTTTGTATTTTATCACGGTCTCACCAGTAA 2380432 37 100.0 35 TCACCAGTAA ..................................... TCTTTTTGGAGGCTACAGGAATTACTACGGACACC 2380504 37 100.0 34 TACGGACACC ..................................... TTATATTTCGACGCAAATCACGAAATATGATAAG 2380575 37 100.0 35 ATATGATAAG ..................................... AAAATTGCTGTAATGTTCCGCAATCCTCATTATTA 2380647 37 100.0 37 CTCATTATTA ..................................... ATTTAGATTTTGAGAGGATGGTAAGGCACAAATCTGC 2380721 37 100.0 35 ACAAATCTGC ..................................... TTTTAGGATCCTGTAACAACTCTGCACGCTTCATA 2380793 37 100.0 36 ACGCTTCATA ..................................... AAAGATTGAATGGGTATTCAGAATGAACTTCTTCCC 2380866 37 100.0 34 ACTTCTTCCC ..................................... CTTACATGGTAGGGATATTAGCAGAGAATGATAA 2380937 37 100.0 41 AGAATGATAA ..................................... TGATGGACATTAATATTTTGACAGTTGTCAAGCCTCACCGA 2381015 37 100.0 36 GCCTCACCGA ..................................... TGTAATTGAGGGAAATCATGAATCCTGACCTCTACA 2381088 37 100.0 GACCTCTACA ..................................... TCTTTACAG ========== ====== ====== ====== ========== ===================================== 25 37 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [926,245] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 4523448 30 100.0 44 NNNNNNNNNN TAGGATT.TA..T....AA..A........ CATTGGCTTTAAGGATCCCTGTGATCCCTGTAATACACTTAATC 4523522 30 100.0 39 NNNNNNNNNN .............A................ CGTGCGTGGACTCGGAACCGTCTCCCATTTACATTTATT 4523591 30 100.0 38 NNNNNNNNNN .............................. CTAACTTTAATGGGAACGTCTGCGGCTGCTGTTGCTGC 4523659 30 100.0 38 NNNNNNNNNN .............................. CGGTTGCAGGAGCTGTAGCGAATGGCTTCATGCAAACC 4523727 30 100.0 36 NNNNNNNNNN .............................. TGCATATACTTTCACGCTATCATACCTTTCAAGCGG 4523793 30 100.0 37 NNNNNNNNNN .............................. ATCCTTTGAATCATGGTTAAAATCCTCAGATATGACC 4523860 30 100.0 36 NNNNNNNNNN .............................. CTATCAGGATGTCAATTGGTGTCCTGATGATATCCA 4523926 30 100.0 36 NNNNNNNNNN .............................. AGAGTTTTGAGGTCCTTGAACCTGAAAAAAGAATCG 4523992 30 100.0 38 NNNNNNNNNN .............................. ATTCAAAAACAGTTGCATGTTACACCGGTGCAGATGTG 4524060 30 100.0 34 NNNNNNNNNN .............................. TCGGCACAGTAGCCTCTAATGGTTCATACATAGT 4524124 30 100.0 34 NNNNNNNNNN .............................. AGTTTTGTTTTGTTGCTATAAAAAATAATAGTGC 4524188 30 100.0 36 NNNNNNNNNN .............................. AACGACATTCATCACAATGTAAGGAATGCTAGTGAT 4524254 30 100.0 36 NNNNNNNNNN .............................. AGAATCAAGTACGGCTGATGTGTCTTTCCAAGATGT 4524320 30 100.0 36 NNNNNNNNNN .............................. AAATGCACGAGCCGCAGCCGTAATTATATTGACGAC 4524386 30 100.0 36 NNNNNNNNNN .............................. TATATTTTTTTGTTGACTCTCAAGAAATCAAGCTGT 4524452 30 100.0 41 NNNNNNNNNN .............................. CTTATACCTATAAGCCTCCCGTAACCATAGAGGACGACGAG 4524523 30 100.0 40 NNNNNNNNNN .............................. GCTCAGGAGATTCAGCAGGGGTAGCTAACGTCATAAACTA 4524593 30 100.0 35 NNNNNNNNNN .............................. AATCTTTCCATTCGTATGGTTTCTCATCTTTTTTA 4524658 30 100.0 36 NNNNNNNNNN .............................. GATTTCTTCAGGAGCAGGGACCTGGACAACACCGAC 4524724 30 100.0 40 NNNNNNNNNN .............................. TATCATAGGTTGAGTTCTCGGTATGAGATGGATGTTAGAA 4524794 30 100.0 38 NNNNNNNNNN .............................. TTTGTAAGTGAGCCTTCGATAGATGCCTCTAAGCAGTT 4524862 30 100.0 38 NNNNNNNNNN .............................. TTGAAGTCTAAGCTAACTCCTGAGATCCAGGAGAAAAT 4524930 30 100.0 35 NNNNNNNNNN .............................. AGCCTTACATTCTTCGCATCGAGTTCATATTCAAG 4524995 30 100.0 35 NNNNNNNNNN .............................. ACTTCAAGAATGCCAGGTAAACCGCATCTGAGACC 4525060 30 100.0 36 NNNNNNNNNN .............................. CTGCTGAAACTTCATATTGTTTCATGTTCTCTCCTT 4525126 30 100.0 34 NNNNNNNNNN .............................. ATAATCCAACGGGGCATAGTGTCAGGCAGTATGA 4525190 30 100.0 39 NNNNNNNNNN .............................. AAGTTGCAGAGGACTATCGAAACGAAACTGAAGATATGC 4525259 30 100.0 36 NNNNNNNNNN .............................. TACATCTTCATATTCATATATATACACTTCAGATAT 4525325 30 100.0 36 NNNNNNNNNN .............................. GTTGAATGCGAACGCCTGCGGGGATTTCCGGATAAC 4525391 30 100.0 35 NNNNNNNNNN .............................. ATGCTATGCTCGGAGCCACTCCGAAAATGAGAGAG 4525456 30 100.0 36 NNNNNNNNNN .............................. ATTCCACCGCGACAAATAATATATACGTGGATCTCA 4525522 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTCAATCCCTCTAAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [85.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [126,313] Score: 0.18/0.18 # # Final direction: R [0.27,5.46 Confidence: HIGH] >NC_003912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1594102 37 100.0 29 NNNNNNNNNN .A................................... TCCATTCTCATGAAATATTTAGCCATTAT 1594168 37 100.0 29 NNNNNNNNNN ..................................... GGTAGTAGAATTATCTTTGCTGGTATTAA 1594234 37 100.0 29 NNNNNNNNNN ..................................... TCTAAAATTGTTTCATTTTCATTAGTAGC 1594300 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 29 TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.38%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [120,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_003869 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2326770 30 100.0 37 GCTTGAACGT .............................. CAGTTTCAAATTGGATATAAAGGTTATATTCAACTCG 2326837 30 100.0 37 ATTCAACTCG .............................. ATATAGCTAAAGAAGTTAATAAACTTATTTCTTGGTT 2326904 30 100.0 37 TTTCTTGGTT .............................. CTGGGCAAAAGAAGCAATTGTGAATATGTTTCAGAAA 2326971 30 100.0 38 GTTTCAGAAA .............................. TCATCTAAAACCGTAAGCTTATACGTCACGCAAATTGC 2327039 30 100.0 37 CGCAAATTGC .............................. CCAAGGCTTTGGCGACACATCAGAAACCATATGTAGC 2327106 30 100.0 36 CATATGTAGC .............................. CTAAAAACAAAAGGCTCGCAATTGCGAACCTGTTCC 2327172 30 100.0 37 AACCTGTTCC .............................. TGCCCCATGATTTAAGTTTGAGTAAGGGACTCCGTCA 2327239 30 100.0 37 GACTCCGTCA .............................. GATTTTTTTATAGTGATAATCTTACGGTAATCTTCTA 2327306 30 100.0 36 TAATCTTCTA .............................. ACTGGAAAAGAATGCGGACAAGCAAAAATCCTCACG 2327372 30 100.0 37 AATCCTCACG .............................. AGCAATAAGCTCTTTCCAGTTCATTTGATTTTGCACA 2327439 30 100.0 36 ATTTTGCACA .............................. ACTTTCAGATGAAATAGCAAACAATCTCACAAAAGT 2327505 30 100.0 38 TCACAAAAGT .............................. TGTTTAACCGCTTCTTCTATGGCAAGAAGTATTACGCC 2327573 30 100.0 36 GTATTACGCC .............................. TCTATAGCTTCTTTTTCTAAATCAGCTATTGGTAAG 2327639 30 100.0 37 TATTGGTAAG .............................. TTGGTAACCGAGACCCCCATAAACCTTGATTGCTATA 2327706 30 100.0 37 GATTGCTATA .............................. TTCCATACAAATCTACAGCAACCAAAAGTCTTTTCAA 2327773 30 100.0 36 GTCTTTTCAA .............................. AAAATGGACAAGTTAGACATAGCTTTGAGTTTTGGA 2327839 30 100.0 37 GAGTTTTGGA .............................. CACTGAAAGGAGGCGAAGTGAATGAACAGAAGATGCG 2327906 30 100.0 36 AGAAGATGCG .............................. CTTATGACTTACTGGCTATACTTATACCCGCCCTGG 2327972 30 100.0 39 CCCGCCCTGG .............................. ATATTACTGCTCCCTAAAAAATCAAATTCTTTATCGAAA 2328041 30 100.0 37 TTTATCGAAA .............................. AGGCTACACGACACAATCTGGCTGTCATCTTTATATG 2328108 30 100.0 36 TCTTTATATG .............................. GGCTAGACATTATAAACACCTTATCCGAACACTATA 2328174 30 100.0 36 GAACACTATA .............................. ATTTTTGTTCGGTTCATACACTCACCTTCTTTGGCC 2328240 30 100.0 36 TTCTTTGGCC .............................. TTGCGCCTCCGCACTTCCCACAGTATATCAAACCGG 2328306 30 100.0 36 ATCAAACCGG .............................. GCCTCACCGGCCACGAACTTACCTATCGCCATGTTG 2328372 30 100.0 36 CGCCATGTTG .............................. ACTGGCGATTTATTGGCAGTTTTAATGTTGCTGCTT 2328438 30 100.0 38 GTTGCTGCTT .............................. AACTTTCCACTCTACTATGTAACCTTGTGCATGTCCTA 2328506 30 100.0 38 GCATGTCCTA .............................. TTTAATACATCATCTCTGTTCGGAAGTAGTATTTCAGC 2328574 30 100.0 36 GTATTTCAGC .............................. ATTTCGTTAGCTGATATATTACCCACCGGTAGGCTA 2328640 30 100.0 36 CGGTAGGCTA .............................. CTGGTGGAACTACTACCCAGAAGGGGTCATAGAGGA 2328706 30 100.0 36 TCATAGAGGA .............................. TGAGCTGCCGGAGTTCAACTTCAACTACGAAGGCGA 2328772 30 100.0 37 ACGAAGGCGA .............................. ACGGCAATCCATTCATGCCAGTGAGGGCAACAGTGTC 2328839 30 100.0 38 CAACAGTGTC .............................. GCCCAAAAAGGAAGGCGGTAAGTATGAAAAAACCTATT 2328907 30 100.0 37 AAAACCTATT .............................. CTTCATAAGCTTTTTATAACCTGCTATTGTAGTCTGT 2328974 30 100.0 36 TGTAGTCTGT .............................. CCTCAACCCTCTGCGGCAATGCATCTTGCAGCTCAG 2329040 30 100.0 36 TGCAGCTCAG .............................. CCTTAATTAGAAAAGCACAGCGGGTAGGATACGACG 2329106 30 100.0 36 GGATACGACG .............................. ATCCATGGACGTGACTCCGGTCTACAGCCGTGAGTC 2329172 30 100.0 37 GCCGTGAGTC .............................. GACAACAAAGCGATGTAGAGAGTGGAGAGATAGCAGT 2329239 30 100.0 37 AGATAGCAGT .............................. AGCGTTCAAACTGCTCTTCAGACAATTCATTTTCCGT 2329306 30 100.0 35 CATTTTCCGT .............................. GTACTAGCCAGTTGTTTAATTCGTCCCTTATCCAA 2329371 30 100.0 37 CCTTATCCAA .............................. TGGTATATGTAGATGGAATAGGCGAAGTACCAATACC 2329438 30 100.0 36 TACCAATACC .............................. TATAGTCCCTATAACAAAAAGCCCGCCCAGTTGAGC 2329504 30 100.0 37 CCAGTTGAGC .............................. AAACCTTTCATTCTAATAACACCTTCCCGCTGTATAG 2329571 30 96.7 36 CGCTGTATAG ........T..................... TTGAGAGTGTTCCTTCAGCGAGGCTGAGGCAAAATG 2329637 30 100.0 37 AGGCAAAATG .............................. CTATAAAAACATAGGAGAAGACCTTGTCATCATCATG 2329704 30 100.0 38 CATCATCATG .............................. ACAGTTCTAACGTGAGATTGTGGACAGGTAAACTATTG 2329772 30 100.0 36 TAAACTATTG .............................. CTGTAATGGAATTCTTTGCAGGACGCAAGCCACAAA 2329838 30 100.0 36 AAGCCACAAA .............................. TTAACTGAAGACCCAAGAAGCGAAGAAGAGAAAGAA 2329904 30 100.0 37 AGAGAAAGAA .............................. GAGCTGGTAAGTAAGTATTTTCCGGCTTGGTATTTAG 2329971 30 100.0 37 TGGTATTTAG .............................. GCACAAATGAGTTAAGTAGCTTCAAGTACGTTGCATC 2330038 30 100.0 37 ACGTTGCATC .............................. TGTCAAGATTGTCACAACAAAGAGCATAGTGCAAAAA 2330105 30 100.0 36 AGTGCAAAAA .............................. AGGGTAGTGGCAAGCTAAATGTAGAAGGATTAGCTA 2330171 30 100.0 36 GGATTAGCTA .............................. CCAATTAGTGCAGGTGTAGGCTTTGTAACAACTCCT 2330237 30 100.0 36 AACAACTCCT .............................. AGGGTAGTGGCAAGCTAAATGTAGAAGGATTAGCTA 2330303 30 100.0 38 GGATTAGCTA .............................. TCCTTTTTATCAGCTCAGACCTGAAGAAAGAGCGAAAA 2330371 30 100.0 37 AGAGCGAAAA .............................. CCAGCATTGTCTAAACACTTAAAGAAGCGCAAAACAG 2330438 30 100.0 37 CGCAAAACAG .............................. CATATACTAAACTGGGGTAGTATGCACATTTTTCCGT 2330505 30 100.0 37 ATTTTTCCGT .............................. AACTGAGCGGACCCTCTAAACCTGGTGTTGGCCCAAA 2330572 30 100.0 37 TTGGCCCAAA .............................. GAGGCTCAAAAACAGGCTATAATCGCTTTAGTGAAAG 2330639 30 100.0 39 TTAGTGAAAG .............................. GCAACAGGGAAAAGAAAAAGGATTGTGCGATATGTAAAA 2330708 30 100.0 38 ATATGTAAAA .............................. AGGCACCTTACGATGATGCCGCAACGTATTCAGGTACT 2330776 30 100.0 38 TTCAGGTACT .............................. TGAGCATGTCCTCCAAGGCGCTGAGAGAATTAGACAGG 2330844 30 100.0 37 ATTAGACAGG .............................. GGCATTGCTTTGAAATGTAGAAGTCCTGTTATGTAGT 2330911 30 100.0 37 GTTATGTAGT .............................. AATCCCTTAACAATCCCTTTTATTGGGACCCCTTTAG 2330978 30 100.0 36 ACCCCTTTAG .............................. GATGAGGAGTTGAATAGGTATCAGGATATTATTGAG 2331044 30 100.0 38 TATTATTGAG .............................. AAATTCTCTCTGTCAAAATATTGCACTTCATTATAAGC 2331112 30 100.0 CATTATAAGC .............................. AAAAATGCCA ========== ====== ====== ====== ========== ============================== 66 30 36 GTTTTTAGCCTACCTAAAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [922,529] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_003869 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2537225 30 96.7 37 GCACAACCTA -............................. CGAAACATGTAGAGGCAGGTCAGGATTGGAGTCGTTA 2537292 30 96.7 36 GGAGTCGTTA ............T................. CTTTTCAGACTTCTCCCAAATCCTATCTGAAAGGAA 2537358 30 100.0 40 CTGAAAGGAA .............................. ACATCATAGCCCTCCTCGGCGAGCCAAGCCGCAATGTACA 2537428 30 100.0 36 GCAATGTACA .............................. AATAACAAAAATCAGAAGAAAACCAGCACGAACGAG 2537494 30 100.0 37 CACGAACGAG .............................. ATAGAACGCTTCAGAGGATTAAAATCTATCCTATCAC 2537561 30 100.0 37 ATCCTATCAC .............................. TCAGCTAGTAAGAATTTTACTTCTTAAAGAGATTAGA 2537628 30 96.7 37 AGAGATTAGA ............T................. CCACTCCCACCATATTTGCCGGGATTAAGGCTCCCAG 2537695 30 100.0 38 AGGCTCCCAG .............................. GTCAACAATTCTTAATATAGATTTTCTTGAAGAAGAAG 2537763 30 100.0 40 GAAGAAGAAG .............................. AATGTAGTCTGTATTCTGGCATGTCCCAACCGTTTTTGAA 2537833 30 100.0 36 CGTTTTTGAA .............................. GCGGGGGCCTGCCCCAGACGTATACAGTTAGAAGCA 2537899 30 100.0 40 GTTAGAAGCA .............................. CTGTCGCAAGATTTTTAGGTTTTCATAGTCCAGCTGAAGA 2537969 30 100.0 38 CAGCTGAAGA .............................. TAATTATGTCCCTGCACGTGTGCACCTATTGTATCACG 2538037 30 100.0 37 TTGTATCACG .............................. CGACGATAATAAAGTCCATGTTAGGTGTGATAACAAT 2538104 30 100.0 37 TGATAACAAT .............................. TATGACTTACTTCTTTCGGCAGACAATGCACAAACGA 2538171 30 100.0 40 GCACAAACGA .............................. TTTTAAACGAAGAAAAGGAAACATAAAAAGTGCCCGCAAA 2538241 30 100.0 41 TGCCCGCAAA .............................. GCGCAGACAAGAAGTACAAGCGGTAGAAAGAGAAGACTTAC 2538312 30 100.0 40 GAAGACTTAC .............................. CAGCGATGGGAGATTAACAATACGTTACTTGGATGTAAAT 2538382 30 96.7 39 GGATGTAAAT .........G.................... ACACGGCCAACTACTACGTTTTGCGCCGGACCAACATGC 2538451 30 100.0 40 ACCAACATGC .............................. TTACAGTACAACATAAACATGGAAGATTTTGTATTTGCGA 2538521 30 100.0 37 GTATTTGCGA .............................. GTCACTATGGTAAAGAAGTTAATATTGTGGGGCTTAA 2538588 30 100.0 36 TGGGGCTTAA .............................. ATGAAGGCTGGAAATTGATGATAAAAACATAGTATA 2538654 30 100.0 38 ACATAGTATA .............................. ATATGGGAAACTATACACTAATGATAGCAAAAATGAAG 2538722 30 100.0 36 AAAAATGAAG .............................. CGTTCCAACCCTCTTTTTTAAAGAGGGCTCGAATGA 2538788 30 100.0 37 GCTCGAATGA .............................. ACTTTTGTACTTGAAATATAGTTGTAGAATCTGTACT 2538855 30 100.0 39 AATCTGTACT .............................. TCTATCTCTACCGGTTGTGGCAGCGTATACCCCATCCTC 2538924 30 100.0 CCCCATCCTC .............................. ATTAAAAGCT ========== ====== ====== ====== ========== ============================== 26 30 37 GTTTCAATCCCTCTTAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [256,2007] Score: 0.18/0.18 # # Final direction: R [0,5.73 Confidence: HIGH] >NC_003869 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2540585 30 100.0 39 CTTGAAGAAC .............................. TCCGTGATAAACAAGAAGCCTGGGATGCAGGCTTCATGA 2540654 30 100.0 37 GGCTTCATGA .............................. AGGGCAAATATAGGCGTTTGAAAGGGGTGTTTAGGGA 2540721 30 100.0 37 TGTTTAGGGA .............................. GACTTGGTTACACACTTGTAAGCAATGGGGCAATAAA 2540788 30 100.0 37 GGGCAATAAA .............................. AAAAGCGCAAATAAACGCTTTTCAGGACGGTTTTTAG 2540855 30 100.0 35 CGGTTTTTAG .............................. AGGCGAACTGATAGCAAAAAAAATAGCAGTTGAAG 2540920 30 100.0 38 GCAGTTGAAG .............................. AAAATTATTTTGAAGAGAATTTTCAGAAAAATTGAAAT 2540988 30 100.0 36 AAATTGAAAT .............................. CTCCTTTAACATTTTTTCTTTGCCGGGATTAAGGCT 2541054 30 100.0 40 GATTAAGGCT .............................. GTGGAGTTGTGAAGGTGGTGAGGTGATGGCGAGGTATAAT 2541124 30 100.0 35 GAGGTATAAT .............................. GTCGTAAAAGCAAACCACGCACCGATAAGAGTAGA 2541189 30 100.0 40 TAAGAGTAGA .............................. CCATAGAAATTCCTGAAGAATCATTTGAGGAATTTATTAA 2541259 30 100.0 39 AATTTATTAA .............................. GATAAAATGCGTGGTGGCGTAAGAAAAAGAGGTAAGAGA 2541328 30 100.0 37 AGGTAAGAGA .............................. TTGAGCTTCTTAGAGAAAAAGGAATACTCATCAAAAG 2541395 30 100.0 37 TCATCAAAAG .............................. CATCATAATCACCCAAGTCATACTCGTACAAGCTTAA 2541462 30 100.0 39 ACAAGCTTAA .............................. TGGACAAGCACGCAGACCCGAATATGTATGGACCACCAA 2541531 30 100.0 39 GGACCACCAA .............................. ATGATTTCCCCCAGTAATCGCCAATATTTTGTTGGCGAT 2541600 30 100.0 37 TGTTGGCGAT .............................. ACTGGGGGAAATCATGAGCAACGCAGTGTAAAAGAAA 2541667 30 100.0 39 GTAAAAGAAA .............................. GACTTAGGTGCTAAGCCAGTCGATAAAGAAAAACAGATT 2541736 30 100.0 37 AAAACAGATT .............................. GCCTCTCATGGATTGGATAAGGGACGAATTAAACAAC 2541803 30 100.0 37 ATTAAACAAC .............................. TTTTAACAGTTAAGCAAGCAGTTAACAAATTCTTTAA 2541870 30 100.0 37 AATTCTTTAA .............................. GAGCTTTTGAATGTAATGGAGAATTCTTCCACATCTG 2541937 30 100.0 38 TCCACATCTG .............................. GATGAGGAGGATTATGCTCCTTATGCATGGGGTTCTAC 2542005 30 100.0 36 GGGGTTCTAC .............................. TTTAAAAATTTAGAAATTGGTGAGATTGGTGGGGAG 2542071 30 100.0 39 TGGTGGGGAG .............................. TGTCAAAGGTGATAGTATGATTAACGCACGTATTATGGA 2542140 30 100.0 36 GTATTATGGA .............................. GCTGGCAGAGCTGAATAAGAGCTTTGGTAATGTCGA 2542206 30 100.0 39 GTAATGTCGA .............................. TAGCGTGGGAGGTTGGTGTTAACGAGAGTGCCGTCGGAG 2542275 30 100.0 39 GCCGTCGGAG .............................. AAGAGCTTGAAGTTAGAGTGGCACAGATTAGCAGAATAT 2542344 30 100.0 35 AGCAGAATAT .............................. AGCAAAAGTAAACAGAATAAGAATGAGATTAGATC 2542409 30 100.0 38 AGATTAGATC .............................. TTAAAAATATCAGCTAGCTTTATAAGTGTCTCATAATC 2542477 30 100.0 38 TCTCATAATC .............................. GTTGGTATTAGTTTTGTAACTTATTCAGCAATAGAAAA 2542545 30 100.0 35 CAATAGAAAA .............................. GCAGATGAAACAAGTTTTGGAGATGCTGCAGCAGT 2542610 30 100.0 40 CTGCAGCAGT .............................. GTGCTTTTATTTTTGCATACAAACTTACGCTGACACCGAG 2542680 30 100.0 40 TGACACCGAG .............................. GGGTGAAGAAATAAGGACAGGTCAAATAAGTGATGAAACA 2542750 30 100.0 38 TGATGAAACA .............................. CGTATTGCCGACCTTGAGATGGCAATAGCAGCATTACT 2542818 30 100.0 37 CAGCATTACT .............................. TGCCACACGTTGTGCCACGTGTGGGCATAAGTTCGAC 2542885 30 100.0 38 TAAGTTCGAC .............................. TCTGTTGCTTTCATCTGTTCTAAAAAGTCCTGTGTTAC 2542953 30 100.0 37 CCTGTGTTAC .............................. TATGACTTGCCGTATGCGATAGTTCAACACGAAAGAT 2543020 30 100.0 36 CACGAAAGAT .............................. CGAAAGGCCAGGGGTGGGGCCGGGGGTGTAGTGCAA 2543086 30 100.0 37 TGTAGTGCAA .............................. CTGGCAGCCTGTTGCGACAACCCCTATATTTTTACGA 2543153 30 100.0 37 ATTTTTACGA .............................. CTAACATCCCGGCCAATATCAATGCCACTCCACTATC 2543220 30 100.0 37 CTCCACTATC .............................. AGACTTTGAAGTAATAGACGAAGACATACCATTGCCT 2543287 30 100.0 36 ACCATTGCCT .............................. TGGCTTTTGGGCAGGCGATTGCGGCTCCATTCGGGC 2543353 30 100.0 36 CCATTCGGGC .............................. AAGGGATAGCAAAATATTTCGGATTACAGAAAAAGG 2543419 30 100.0 36 CAGAAAAAGG .............................. TTTTTGACATAACATCCTACCAAATCTGCACCTAAA 2543485 30 100.0 38 TGCACCTAAA .............................. GCCAATACTACCTCGTACTTACGCTCTCCTACTGCTAC 2543553 30 100.0 36 CTACTGCTAC .............................. TCCACCCCCCACCAAGGTCGAGGACATCCCCCACCT 2543619 30 100.0 37 TCCCCCACCT .............................. TGAAACCACACGACTAGGATAGATTCCCCTAGCCACG 2543686 30 100.0 39 CCTAGCCACG .............................. GAGCTGTCCCCCCAGATAGACGAGTATCTGGTTCCGGCG 2543755 30 100.0 37 GGTTCCGGCG .............................. GTTTCTGGATGAAACTGGTCGGGTCAGTCTAGCTAAA 2543822 30 100.0 35 TCTAGCTAAA .............................. CGCAATTGTCCGTCCATTTCTAAATTTACCTTAAT 2543887 30 100.0 36 TTACCTTAAT .............................. GAAATTATTTTTACACTGTTTTTGTCGTGTCTACTG 2543953 30 100.0 38 GTGTCTACTG .............................. CATACTTTCAAGTGTTAAAATAGAGCGTTAGTAATTTT 2544021 30 100.0 39 TAGTAATTTT .............................. TAAATCACCGCTCCAGCTTCCGCCCATTGCTCCTGATAG 2544090 30 100.0 36 CTCCTGATAG .............................. CAAGATACTACTGGCTTAAAAAAAATATAGAGCAAT 2544156 30 100.0 36 ATAGAGCAAT .............................. CCTGGTATTAGCGACTGCATAAACAAAGGAAGGAGG 2544222 30 100.0 36 AGGAAGGAGG .............................. ACGGTACCCGCTCCCCCGAGACCCTGACAATCCCCA 2544288 30 100.0 36 ACAATCCCCA .............................. TCAAAACCTGAGCTTTAAAAAGGCCGTCTTTAAAGA 2544354 30 100.0 37 TCTTTAAAGA .............................. GATAAAACTGGTCGGGGCAGTCCAGCCACACTGCTCT 2544421 30 100.0 39 ACACTGCTCT .............................. CGTAATCGCGTTTTTTGCGTCTTGATGCACTGCGTGTGC 2544490 30 100.0 37 CTGCGTGTGC .............................. AGCTTTCTGCTAAGTAGCAGAAAACTCTAGAAGGAGC 2544557 30 100.0 36 TAGAAGGAGC .............................. CTGCGTGTGCAAGTATATAATGAAGACAGAAAGAGA 2544623 30 100.0 38 CAGAAAGAGA .............................. GGGCGAGGCCCGCAGGAACTGGCAACAGTTTCCTGCTA 2544691 30 100.0 37 TTTCCTGCTA .............................. TCAATCTGCCTATGTTTTTGATAAGGAACATTCTCTG 2544758 30 100.0 36 ACATTCTCTG .............................. CATGTAAGGAGTTAGGTGCCCATCCCCAAAGTTAGA 2544824 30 100.0 39 CAAAGTTAGA .............................. AATACATGCGGTTAGTTAGAATATCCCCGATTCATGAAG 2544893 30 100.0 37 ATTCATGAAG .............................. TTGGTACTCTCGCCGACGGTGGTTCACTCAGACGATG 2544960 30 100.0 36 TCAGACGATG .............................. ATAAAACTGGTCGGGGCAGCATGGCACAATCGGCCT 2545026 30 100.0 36 CAATCGGCCT .............................. CTCGGGTACCCCGCTCGCAAAACCGCACAGACAAAA 2545092 30 100.0 36 ACAGACAAAA .............................. GAAGCGTCAATACGCAGTAGGTTCAGAGCAGAGTTA 2545158 30 100.0 39 AGCAGAGTTA .............................. TTTTCTCTTGAAAGAAGCTGGTTTAACTGGTGTTTACAA 2545227 30 100.0 38 GTGTTTACAA .............................. AAGACTCACTCGCATGCGTTATCATATTGTCAATAGCT 2545295 30 100.0 37 GTCAATAGCT .............................. TGAGCAAGGGTCTTTTAAGTAGGGAGTATATCCCTGC 2545362 30 100.0 37 ATATCCCTGC .............................. GAAAAAAGAGGACTTCCATAGCATTGTGGAAACTCTT 2545429 30 100.0 39 GGAAACTCTT .............................. GGAAGTGCTGTGAAACCGGAAAAGAAAAAGCCTATACCA 2545498 30 100.0 37 GCCTATACCA .............................. AAGACTGCCGAATGGCTTAAAATACAGTTCCCCAAGC 2545565 30 100.0 37 TTCCCCAAGC .............................. CAAAAAATTCAAACAACTCAAATATAAAGCTCTGGAC 2545632 30 100.0 36 AGCTCTGGAC .............................. GACTGGTGCTGTTGGAGGTGTAAACCCTGCAACACC 2545698 30 100.0 38 CTGCAACACC .............................. TAGAGAGGGCAATCCCAGAAGAACAGCAGCAATTTTAG 2545766 30 100.0 36 GCAATTTTAG .............................. CGAAACTGGCGCATTGGGAACGCGGTTAGGTCTATT 2545832 30 100.0 38 TAGGTCTATT .............................. GCACTTAAAATCCTCGAGCGACAAATCAAGCAACAGCA 2545900 30 100.0 38 AGCAACAGCA .............................. TCATAGTCAGGATAATTCAATTGCGAATAAGCATAGCT 2545968 30 100.0 37 AAGCATAGCT .............................. TTGATGAACTTGACAGAAAACTTGGTGGTCTCAGAAA 2546035 30 100.0 40 GTCTCAGAAA .............................. CTTTTTTGCGGGTTGATGTACTGTGTGTGCAGGTGTAAAA 2546105 30 100.0 38 AGGTGTAAAA .............................. ACGGTAACACTCAAAATCAAGCTCCTGCCTCCCAACAA 2546173 30 100.0 37 CTCCCAACAA .............................. AATAGTAAAAAGAAAGGCAAAAGAGGCGAATTGGAAC 2546240 30 100.0 36 GAATTGGAAC .............................. CTCAGAGCGAACGATTTAAGTCAAGTGCGAGAGATC 2546306 30 100.0 35 GCGAGAGATC .............................. GAAAATGTCTTTAAAAGCTTATACAAGAAAAAGTA 2546371 30 100.0 38 AGAAAAAGTA .............................. GAAGCAAAGCTCGTTCTGACAAATGATAGCACTCTGTT 2546439 30 100.0 37 GCACTCTGTT .............................. TCACCCACAGAGCTAGTATAAGCGGAGTTCTGGGGTT 2546506 30 100.0 38 TTCTGGGGTT .............................. TTTGTGGAGGCTTCTGCGTGAAGGCCATAAGAAAGGGC 2546574 30 100.0 37 AAGAAAGGGC .............................. AACAACTTGCGAGGACTAATCGAGATGCCTTACTGAG 2546641 30 100.0 37 CCTTACTGAG .............................. AAATTCACAATTGTAGAAATTATAAATTTGCCCAAAT 2546708 30 100.0 37 TTGCCCAAAT .............................. GTAACATGGGATACACTTACGCCTATCAATCTAACAG 2546775 30 100.0 35 AATCTAACAG .............................. CTTCTATACTAGAATGGGCAGCAGAAAATTTACCG 2546840 30 100.0 36 AAATTTACCG .............................. ATTAACATCAGCGCAAGAACAACCTGTACAAGCTGG 2546906 30 100.0 36 TACAAGCTGG .............................. ATTGCAAGAGATAAAGAGACGCCACCTATTAGACTT 2546972 30 100.0 39 TATTAGACTT .............................. CGTTTAATAATCTCAATTGCCATCCTCTTCTTCCTCCCA 2547041 30 100.0 36 CTTCCTCCCA .............................. AGTAAATGAGAAGATAATTAGTATTTTAAAAGAACA 2547107 30 100.0 39 TAAAAGAACA .............................. CTTTATAAAGAAGGAATAAAAAAAAGGCTATGCCTTAAT 2547176 30 100.0 36 ATGCCTTAAT .............................. ATCTGATACAGCTTTTTCTGGAGAAAAGATAATGGA 2547242 30 100.0 38 AGATAATGGA .............................. GCCCCTCAATATCCCTGTAGAAGACAATTGCTTCTACA 2547310 30 100.0 37 TGCTTCTACA .............................. TTCGAAGTTTATTACATCAAAACTTGTGGCCTCTCTA 2547377 30 100.0 35 GGCCTCTCTA .............................. TTAGCTAATGCAATAGCAATCGCAATTCAAAATAG 2547442 30 100.0 36 TTCAAAATAG .............................. TAAAGCAGGTAAAAATGACATACCTACCATTGCCCA 2547508 30 100.0 36 CCATTGCCCA .............................. CCCTAAAAAGCGTAGCCTTTTTAGCTCCGACAAAAG 2547574 30 100.0 38 CCGACAAAAG .............................. GTGTATCTAAGCCCAAAGGTATCGAGTATGCTGCAACA 2547642 30 100.0 35 TGCTGCAACA .............................. ACTATTTATGTCAGCTCAGGAAAAACCTGTACAGG 2547707 30 100.0 36 CCTGTACAGG .............................. TAAAGCAGGTAAAAATGACATACCTACCATTGCCCA 2547773 30 100.0 36 CCATTGCCCA .............................. CCCTAAAAAGCGTAGCCTTTTTAGCTCCGACAAAAG 2547839 30 100.0 38 CCGACAAAAG .............................. GTGTATCTAAGCCCAAAGGTATCGAGTATGCTGCAACA 2547907 30 100.0 35 TGCTGCAACA .............................. ACTATTTATGTCAGCTCAGGAAAAACCTGTACAGG 2547972 30 100.0 37 CCTGTACAGG .............................. ACTTATCAAGTATTAAAAATAGAGGAGGTATAAAGTA 2548039 30 100.0 36 GTATAAAGTA .............................. CATCTTTTATCTCATATTGCAAACAGAGTTAGAACT 2548105 30 100.0 39 AGTTAGAACT .............................. TCACCTTGCGCTATTGCAAACATTCTTTTTGCCTGCGCA 2548174 30 100.0 38 TGCCTGCGCA .............................. TCTTGCAAAGATTAAAGATGATATGAAACAGCCAATCT 2548242 30 100.0 36 CAGCCAATCT .............................. CTCCCTTTCTCGCTTTTTCTGCCTCCATTTTACACC 2548308 30 100.0 37 ATTTTACACC .............................. TTAATGTTATTGTTGAACAAACTATGGGTCGAACATA 2548375 30 100.0 40 GTCGAACATA .............................. TGGAGGAACACCCTTTTACAGAAAACCAGAAGACATAAAG 2548445 30 100.0 38 AGACATAAAG .............................. TTTCCATAGTCGGGGCCGTCGTGCGCCCGCATGATAAG 2548513 30 100.0 37 GCATGATAAG .............................. GAGCTATAACCCCATGAACAAGGATTTCCCCAGGGAA 2548580 30 100.0 35 CCCCAGGGAA .............................. TCTCTTGAGCAAGACCTCCGCAAGTACATGCCTCC 2548645 30 100.0 36 ACATGCCTCC .............................. ATTTTAACACATGAGTTTGGGCATTTAGTTAATACA 2548711 30 100.0 38 AGTTAATACA .............................. TGTACTGCACGTGCGTACAATACAGCACTAGAAAGAAT 2548779 30 100.0 41 TAGAAAGAAT .............................. CTGCCAGTGTGGCCCTGCTGGAAAATAATGGCTCCACCATG 2548850 30 100.0 38 CTCCACCATG .............................. TTGCCCGGTCAGGCAAGTCCAGAAAAGCATCAAATTCA 2548918 30 100.0 37 ATCAAATTCA .............................. GGAGTAAAAAATGTTGACAGTAAAAGATATTTTAGAC 2548985 30 100.0 37 TATTTTAGAC .............................. ATTCATCAAGAAAACTTACACAGGACTATTTTACAAG 2549052 30 100.0 38 ATTTTACAAG .............................. AAATATTTGCCACGACAAATCCCGACAGCCCTTATCAC 2549120 30 100.0 38 CCCTTATCAC .............................. TGAAGAATGGTTTAAGGAAATAGTCAAAAAGCTTAGGA 2549188 30 100.0 35 AAGCTTAGGA .............................. CCAACCTCCTCTCTAATGTAAGATTTATATCCTCT 2549253 30 100.0 39 TATATCCTCT .............................. ACGTCACGAAGTCATCTACAAAGTAGATAAGAAAATAGA 2549322 30 100.0 36 AGAAAATAGA .............................. ATAGAGGCATGAGAAAAGCGAATTATGCAGTGCTGA 2549388 30 100.0 36 GCAGTGCTGA .............................. CGAAAATGGGCAATGCATAGCATATAAAGAATTTAT 2549454 30 100.0 38 AAGAATTTAT .............................. TAGCTGCAAAAGAAAGAGTGAAAGCCGCAGAGCTACTA 2549522 30 100.0 35 AGAGCTACTA .............................. TAGGACACCGTTTGAGTACCCCGAACTGCTGGATG 2549587 30 100.0 37 CTGCTGGATG .............................. TCGCAATAGGGCCAGAAAATAACTACCTCGAATTCCC 2549654 30 100.0 38 TCGAATTCCC .............................. ACTCCTCCTGCAACGTCTTTTTTGAACTCTTCCAAATC 2549722 30 100.0 36 CTTCCAAATC .............................. GCGGATTAATTCCGTCTCCCTTTAAAAACTTTTGTG 2549788 30 100.0 36 AACTTTTGTG .............................. AAAAATACGAATTAGAAAGACTTATTAAATTAGAAA 2549854 30 100.0 37 AAATTAGAAA .............................. TATTGATTAAAAGGAGTGAGAAGTAGCAGGCTACCGC 2549921 30 100.0 40 AGGCTACCGC .............................. GAATGACGAAGGCTTTACGACAAAGTTCTATGCAACACAT 2549991 30 100.0 37 TGCAACACAT .............................. AAGTAAAACTGATTCTAACAAATGATAGCACTCTGTT 2550058 30 100.0 36 GCACTCTGTT .............................. CTGTGGATAAGTTTGTGGATAACTAGAAAAATATTA 2550124 30 100.0 38 AAAAATATTA .............................. CAAAAGTGAATACCGCATACCGCTTATAACAGAAATAA 2550192 30 100.0 35 ACAGAAATAA .............................. ACTATGAAATTGACTGTTGTGTCTTGACTCCCTGC 2550257 30 100.0 36 GACTCCCTGC .............................. CAGCCCTGAACCTGCACCTTGTGGGCTTATCTGAGA 2550323 30 100.0 37 TTATCTGAGA .............................. TAGGAATAGGAAAATCCACATATAACAGAAAAGAAAA 2550390 30 100.0 38 GAAAAGAAAA .............................. ATAATGTTAAAAATACTAAAAGAAGGGGGCAAAATAGA 2550458 30 100.0 37 GCAAAATAGA .............................. GCTAATCCCTTAACTCGTGAATTTCAAATTCACAAAA 2550525 30 100.0 37 ATTCACAAAA .............................. TATAAAGTAACTTGTTTTAGTCATATCATTTAATATG 2550592 30 100.0 38 ATTTAATATG .............................. GCTTCTCTTTGTTCTGAACTGCTCAATGAATTTCCTAA 2550660 30 100.0 37 AATTTCCTAA .............................. ATTCGCAATTTCAAAATCTTAAAAATTTTTCGAAAAT 2550727 30 96.7 36 TTTCGAAAAT ...G.......................... TAGCAAACGATGAATTTGCGTCAATCATAGAAAAAC 2550793 30 100.0 37 ATAGAAAAAC .............................. TCAAGCGTGCTATAGTTGAACAGGGTCCTGTTATGAT 2550860 30 100.0 38 CTGTTATGAT .............................. GTCATCCTTCGAGGATTCCTGGTATAGGGCAGACCCCG 2550928 30 100.0 40 GCAGACCCCG .............................. TTTCGAAAATTGGGACATGTCTGAAAAATTGCACTTTAGT 2550998 30 100.0 36 GCACTTTAGT .............................. CTTGACCATCCTTTCCTTATTTCCTCAACTTTGCGT 2551064 30 100.0 36 AACTTTGCGT .............................. GCAGAGGCTACCAGTACTGCCGTCATACTGCCAGTA 2551130 30 100.0 37 ACTGCCAGTA .............................. GCTGATATGCCGTACTGGAGTGCTAATGAAATGAGTC 2551197 30 100.0 38 GAAATGAGTC .............................. CCAGTGTGGTTATCATGGAAAATATCGCCACCCACCAG 2551265 30 100.0 36 CACCCACCAG .............................. TTTGTAGGAAAAGCTGGACAGCTCCTTGACAAGGTG 2551331 30 100.0 38 TGACAAGGTG .............................. TCTAGAGCGTTCTCTCTTGAGAATGCTCTGGTGGGAGC 2551399 30 100.0 36 TGGTGGGAGC .............................. AGGTTCTTCCCTGCTCATCCCTGACAAGGTCATCAG 2551465 30 100.0 38 AGGTCATCAG .............................. TGGGTTTAAATTCAATCCACATTATCTTCTGCCTCCCA 2551533 30 100.0 36 CTGCCTCCCA .............................. CATTTGAGGATGCTGTTGAAGAAGAAATTCAAGATG 2551599 30 100.0 37 ATTCAAGATG .............................. ATAAGGAAAATAACAAAAGGTACTATAAAATACAAAC 2551666 30 100.0 35 AAATACAAAC .............................. TTATACATGAGGAGGAGATGGCTAATGTTTAAAAT 2551731 30 100.0 35 TGTTTAAAAT .............................. GGTGTTTTTGTGGAATTTGCACTTCTCGTATTAGA 2551796 30 100.0 35 TCGTATTAGA .............................. AATGCTGGTTTGTAGCTCAGATACTGCGCTTTAAG 2551861 30 100.0 38 GCGCTTTAAG .............................. TTGAGAAGGTTCCACTTATTACTGCAGAGCAGTTAAAA 2551929 30 100.0 36 GCAGTTAAAA .............................. ATTAGATGGTGAATATCACAAAGTAGAGCTTGCAGG 2551995 30 100.0 34 AGCTTGCAGG .............................. ATGCTGGTTTGTAGCTCAGATACTGCGCTTTAAG 2552059 30 100.0 37 GCGCTTTAAG .............................. TAAGAAACGGGAAAGAAGAGCAGGAAGAATATTTCAT 2552126 30 100.0 37 AATATTTCAT .............................. GCATCCCGGATGCTGTTTTTTCTTTTCAGAAAGAATT 2552193 30 100.0 36 AGAAAGAATT .............................. GGAAGGCCTCTTTTACTTCCTGATGAAGTTTTAAAA 2552259 30 100.0 37 AGTTTTAAAA .............................. TCAACATACCCTTTTTCTTGCCATTCCGCATAACTAT 2552326 30 100.0 37 GCATAACTAT .............................. AATAACCTGTTTTGCCTGATACCACTTGATTAGAGGT 2552393 30 100.0 38 GATTAGAGGT .............................. GTTTTTGAGGGTCCTGCCCTCTTTTCTCCCCTCCCATG 2552461 30 100.0 37 CCCTCCCATG .............................. AAATATAGTACGAGATAACCATTTCTGACTTCCACTG 2552528 30 100.0 39 ACTTCCACTG .............................. GTGAAAGTCGGGCCAGCCGAAAGGCTGCTACGCTCAACC 2552597 30 100.0 36 ACGCTCAACC .............................. TAACCGCTAGCAGGGCAAGGTACAGCCCGTGAAAGT 2552663 30 100.0 38 CCGTGAAAGT .............................. TAGAAATAGAAGATTAAAATCAAAAAAAGGTCAAGGGG 2552731 30 100.0 36 GGTCAAGGGG .............................. TCAGAAACGATTCTGAGTCAATTTTAGTCGTTTAAG 2552797 30 100.0 35 GTCGTTTAAG .............................. TTACACCTTCTAAGCCTTATACATTCTAATTTCAA 2552862 30 100.0 37 CTAATTTCAA .............................. GCTAACACCTCAATTACCAGCGAGCAATATTGCCATC 2552929 30 100.0 37 TATTGCCATC .............................. TTGCCGATGAGTACATTTTAACAGTCGAAACACCGAA 2552996 30 100.0 36 AAACACCGAA .............................. TAACTGAAGAAGATATTGAATATATGATGACACATC 2553062 30 100.0 38 ATGACACATC .............................. TCAAAATCATGGGAATAGCTAAATATTATCAAAAAACG 2553130 30 100.0 37 TCAAAAAACG .............................. CTGGAAAGCACATCTGACACGACCGGTGTAATCGACC 2553197 30 100.0 37 GTAATCGACC .............................. TTCATTTATTACTCACACCGACCCTACACGTCATACA 2553264 30 100.0 36 ACGTCATACA .............................. CATACTGCCAACCATACTGGCAAAGTATGGCAACAG 2553330 30 100.0 36 ATGGCAACAG .............................. CTGTTGGAAGCTTCTGTAAAGCGTTTTTCCAGCTTC 2553396 30 100.0 35 TTCCAGCTTC .............................. GTATTAATAATCGTTCTTATTTTCCTTGCAGTATT 2553461 30 100.0 38 TTGCAGTATT .............................. GGTAATATATCAACTCATGATAAAGGGGGTTTTGTAAA 2553529 30 100.0 37 GTTTTGTAAA .............................. CAAATTATCGAACAAATCACTCCAAATGATATAGGAG 2553596 30 100.0 38 GATATAGGAG .............................. GGGATTGTGAAAGTTTTCACAATAGGGTCAAGCTCAGA 2553664 30 100.0 37 CAAGCTCAGA .............................. CAATTTCAACTGCCATATTTTATCACTCCCTTTATAG 2553731 30 100.0 36 CCCTTTATAG .............................. TAACTCTGATATAGATGTAACAACCTGCAGTTCTTT 2553797 30 100.0 36 GCAGTTCTTT .............................. GCAAGTGAAAGCAGGTATAAGAAATTTCATAGTCGT 2553863 30 100.0 36 TCATAGTCGT .............................. GCCCTTTATTCTTTCTCCACCATTTTTTCTCATGCT 2553929 30 100.0 37 TTCTCATGCT .............................. ACAAGTTTTGGAAAAACCCGAAAGCCCACACGGGACA 2553996 30 100.0 38 ACACGGGACA .............................. CAGCTCTGGTGTGCATAATGCAGTTGTGAATGTTCCTA 2554064 30 100.0 37 AATGTTCCTA .............................. ATAGATTGCTTATCAAAGCGCAAACTCCAGCTACAAG 2554131 30 100.0 37 CAGCTACAAG .............................. ACACTCCACGTAAAACAAAAGAATATGAGGAGCTAGT 2554198 30 100.0 38 AGGAGCTAGT .............................. ATAGCACAAATTCTAAATGAGAGGATGAGCGAATGAAG 2554266 30 100.0 36 GCGAATGAAG .............................. GGTGCTTGCAAAAAGGAAAAATCAGAATCGCTGATG 2554332 30 100.0 35 ATCGCTGATG .............................. TTGCACATAATTTTTAACCTTCCTTCTTCAGTGTT 2554397 30 100.0 37 CTTCAGTGTT .............................. GTTGCGTTACTGTAAAGTAAAAACCCTAGAGGCTCGA 2554464 30 100.0 35 AGAGGCTCGA .............................. AAGAAATCGGCTATCTTTTGCAAAGTTTCTAAGTC 2554529 30 100.0 38 TTTCTAAGTC .............................. TTGAAAGCCTTCCTTATCTTTATTTTTTTCATACCATT 2554597 30 100.0 37 TCATACCATT .............................. TTGGTACACCGATATTAAACACAGCTATTACAAATAG 2554664 30 100.0 38 TTACAAATAG .............................. ACTCTTTACCGATGTATTCGTCAAGCACCATTTCAAAA 2554732 30 100.0 36 CATTTCAAAA .............................. CCTTATCCTACGGTTTTGTTTGAGTAGCTGATACAA 2554798 30 100.0 37 GCTGATACAA .............................. TACAGCACCGATTAGCGTAGTATCATATCCATTTAAG 2554865 30 100.0 38 TCCATTTAAG .............................. TAAGAGATGCAAAAGAAAATGAAAAGCCAGCGGTGTTC 2554933 30 100.0 37 AGCGGTGTTC .............................. AAGACATACGTAAAGAGAAAAATTAGAGAATTAAAGA 2555000 30 100.0 37 GAATTAAAGA .............................. GCTACTTATGCGATTAAGATATATACAAGGTAAAGAT 2555067 30 100.0 AGGTAAAGAT .............................. ACGTTCAAAT ========== ====== ====== ====== ========== ============================== 217 30 37 GTTTCAATCCCTCTTAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [129,500] Score: 0.18/0.18 # # Final direction: R [0.41,5.32 Confidence: HIGH] >NC_003901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4089310 37 100.0 36 NNNNNNNNNN TC................................... TTTCTCGCATTTCATCAGTTATCTTTATCTCGATCA 4089383 37 100.0 37 NNNNNNNNNN ..................................... GGGAAGGCTGGCTTCAGACATCAAGAAGGAATGAGTT 4089457 37 100.0 37 NNNNNNNNNN ..................................... GCTTTAGAAATATAAACATTTCCTGCTGTCGTGTCTA 4089531 37 100.0 37 NNNNNNNNNN ..................................... GGGAAGGCTGGCTTCAGACATCAAGAAGGAATGAGTT 4089605 37 100.0 37 NNNNNNNNNN ..................................... GCTTTAGAAATATAAACATTTCCTGCTGTCGTGTCTA 4089679 37 100.0 36 NNNNNNNNNN ..................................... AAGGCTATGTACCAATTCCATTAATTACAGGTACAA 4089752 37 100.0 35 NNNNNNNNNN ..................................... GGATATTCAACAGAAGAGGCAAGAAAATATGTTCA 4089824 37 100.0 37 NNNNNNNNNN ..................................... TTGTCTAAAAGCCAGGATCTTGACAGTGGATTCTCAA 4089898 37 100.0 38 NNNNNNNNNN ..................................... ATATTTGCATCTTCGAAGGCATTTTTCATTATATCAGA 4089973 37 100.0 38 NNNNNNNNNN ..................................... GGTATTTTCGAACTTCAAAACTGTATAACGCCAGTATC 4090048 37 100.0 34 NNNNNNNNNN ..................................... TTATACTACAGCGGCAGGAGGAGGAGCCGGGCGA 4090119 37 100.0 38 NNNNNNNNNN ..................................... TCTACTCTCCTGAATAGATTTACATCTTCCAGGGATAA 4090194 37 100.0 36 NNNNNNNNNN ..................................... ACATGACAGCAACAGACGCAGGAGATATAAGGATCG 4090267 37 100.0 37 NNNNNNNNNN ..................................... TGATTTGTGCTTTAGATTCCCATTGTGCTTTCAATGC 4090341 37 100.0 36 NNNNNNNNNN ..................................... TAGATTCAGCGTGATCAAACCGAGTTCTTTTAGAGT 4090414 37 100.0 38 NNNNNNNNNN ..................................... TTCGTAAGTATATGTATTCAATCGCGAAAACAGTCAGT 4090489 37 100.0 38 NNNNNNNNNN ..................................... TAGTATATCCTTAAAGTACGTCGTTTATAGTATATCCT 4090564 37 100.0 37 NNNNNNNNNN ..................................... ACTTTAAGGATATACTATATGTGCGTGGTCTAGCGCT 4090638 37 100.0 34 NNNNNNNNNN ..................................... AGGACGCTCGACGCGTTCGACCAGGCGAACCGGA 4090709 37 100.0 37 NNNNNNNNNN ..................................... TTTTCGAAGGTTGTCCGGAAAATTAAGCGAAGCTTTA 4090783 37 100.0 37 NNNNNNNNNN ..................................... ACGGTGTACCTTTAACGTATACACTATAAGGTATATC 4090857 37 100.0 35 NNNNNNNNNN ..................................... ATTACATCCGCGACGAGATCGAAGGTGAGTTGAAA 4090929 37 100.0 35 NNNNNNNNNN ..................................... TGTAAAAATTCCAGTAAATCCCATCCTTATCTATA 4091001 37 100.0 38 NNNNNNNNNN ..................................... AACGAAATGCGGAAAACGCTTCGGATGTGAAAACGTGG 4091076 37 100.0 35 NNNNNNNNNN ..................................... TTCGGGCATTTTTGGGGTCTAGCAGAAACACTTTA 4091148 37 100.0 35 NNNNNNNNNN ..................................... ACGACTGTCTACGAAAATGTTTGGCGACATGGGAG 4091220 37 100.0 34 NNNNNNNNNN ..................................... AAAGAGAAAGCTGTTACTGAAACCTTGCAACTTA 4091291 37 100.0 35 NNNNNNNNNN ..................................... GCATACCATTGATCTCAGCCTTGCAGCCCTATCGT 4091363 37 100.0 41 NNNNNNNNNN ..................................... GCAATACAGCTACAAACAGGAGGGCATAGCCGGTAATTTAT 4091441 37 100.0 35 NNNNNNNNNN ................A.................... GTCTTCCTTTATCAAGTTTATAAGCTTTCATGTTT 4091513 37 100.0 36 NNNNNNNNNN ..................................... TGTTTAATAGATCAATCCAGGTTTCGCCCTTTTTTC 4091586 37 100.0 36 NNNNNNNNNN ..................................... ATGGAATTAGAAAAGAGGGCGGGACGAGACAGGAAA 4091659 37 100.0 35 NNNNNNNNNN ..................................... CATTATCTCAAAATCCCTCTTGACCAAATGACCCC 4091731 37 100.0 35 NNNNNNNNNN ..................................... TCATGCATTTCAGAAAGGGATTTAGCAGCACAGTC 4091803 37 100.0 35 NNNNNNNNNN ..................................... TTTTGCTCTGATATGTGGCCTGTTTTCTTGTGTCT 4091875 37 100.0 35 NNNNNNNNNN ..................................... GAGCCGGCAGGACTGCCCCCACTCTCGCCGCGATT 4091947 37 100.0 38 NNNNNNNNNN ..................................... CTGGTTCTGGCTTGCGAGGCTTATTTATAATCCGAGCT 4092022 37 100.0 35 NNNNNNNNNN ..................................... GTTTTTTCTCCGCGCATAAATTATTGACATAATAA 4092094 37 100.0 38 NNNNNNNNNN ..................................... TAGGCGAAAAGCTGTTCGGGAACTCAACAACTGATGAT 4092169 37 100.0 36 NNNNNNNNNN ..................................... CCCTCAGAGAAATGCATGAAGCAATTGCCGAATTCA 4092242 37 100.0 34 NNNNNNNNNN ..................................... CTGGCGGTGTATGATCCTAAATTAATTGGGTATG 4092313 37 100.0 35 NNNNNNNNNN ..................................... TACTAAGGGTACTGATTATAAGACATTCTGTGAAA 4092385 37 100.0 48 NNNNNNNNNN ..................................... ACCTGCTGATTTAGCGCAGTTTGTAGACCCTCTTAAAGAATGGTTTAC 4092470 37 100.0 35 NNNNNNNNNN ..................................... CGCTTCAAACCCTGGAGGGGTGGGCCACGAATGGG 4092542 37 100.0 36 NNNNNNNNNN ..................................... ATAAAAAAATAGAACAGAAGGAAGCATTAGAATTTG 4092615 37 100.0 35 NNNNNNNNNN ..................................... ATTAATGTAACAAATAATAATCTAACTCTTAAAGA 4092687 37 100.0 36 NNNNNNNNNN ..................................... GTATTTTCTTTATTACTGATATGATCATTGTCCGGT 4092760 37 100.0 35 NNNNNNNNNN ...C................................. CACTTTCTTCTTGAAATGGGTTCATTTCTTTAGAA 4092832 37 100.0 36 NNNNNNNNNN ..................................... GCGAGAACCAAGCTATTGCACTGGAAACTCTGAATG 4092905 37 100.0 36 NNNNNNNNNN ..................................... GAAATTATGTTTGCTGATGATGTAGTTACTGGGCCA 4092978 37 100.0 34 NNNNNNNNNN ..................................... CAGCTATCATGTGTGGATTACTTCATGATATCTG 4093049 37 100.0 33 NNNNNNNNNN ..................................... GAGATCTCGAAATAAGAACTTATCCATTTTTAA 4093119 37 100.0 35 NNNNNNNNNN ..................................... AAAAAGTGATCCCGAAGCCGATCAATGGGAGGTAA 4093191 37 100.0 35 NNNNNNNNNN ..................................... GAAAAGCACGCCAAGAGACGCGCAGCTCAGAAATT 4093263 37 100.0 36 NNNNNNNNNN ..................................... TTAGGTTGTTCTGGTTCTTCAAAAGACTCAACCGGG 4093336 37 100.0 35 NNNNNNNNNN ..................................... ACTTTACCCCGGCTATCTTCATTCGATCCCTCTTT 4093408 37 100.0 36 NNNNNNNNNN ..................................... TTGGCTGCGTACGGAGTCGAATAGGACAACCTAACA 4093481 37 100.0 37 NNNNNNNNNN ..................................... TTCTCAGCTTCTTCATGAGTCATAGGCATTGAAGCTG 4093555 37 100.0 34 NNNNNNNNNN ..................................... ACGAATTCGCGAGAGAGTATTCAGAGACGTATCA 4093626 37 100.0 35 NNNNNNNNNN ..................................... GATACAGCCCGTCAACCCGCGAGTGCAGGAATTTT 4093698 37 100.0 34 NNNNNNNNNN ..................................... AAAACAATGGTAAACGAACTCATCTTACAAGCAG 4093769 37 100.0 36 NNNNNNNNNN ..................................... AGACAACGCAAAAATGACAACGTTTTTAATTTGGTA 4093842 37 100.0 35 NNNNNNNNNN ..................................... CCAACAACGCCCAAGCGCAGCCGCCGGAAACCTCG 4093914 37 100.0 36 NNNNNNNNNN ..................................... CAAAATTGCCCTTTGATATGATTCTGTCAATGTCCG 4093987 37 100.0 36 NNNNNNNNNN ..................................... CAGAGGTTGAATGAACGGAAAACAGCATGAAACCCT 4094060 37 100.0 34 NNNNNNNNNN ..................................... ATGGTGTTGTCTGATACTGTGTTGCACTGCAAGT 4094131 37 100.0 32 NNNNNNNNNN ..................................... ATTGCTATAGATGTCTCCCCCGACAACATCTA 4094200 37 100.0 35 NNNNNNNNNN ..................................... ACCCCACAAGTAAAATTAGGTGATTATGTTTATGT 4094272 37 100.0 34 NNNNNNNNNN ..................................... CTTATATCAGAGATTATTCTGATTCTGGTAGAGC 4094343 37 100.0 36 NNNNNNNNNN ..................................... ACTCTTTACTGTCTGTATAGTGTGGTTTCTCTTCAA 4094416 37 100.0 34 NNNNNNNNNN ..................................... TTTTATAATAATGCTAAACTCACGGGAAACGGCG 4094487 37 100.0 36 NNNNNNNNNN ..................................... CCGGCACCGTTTTAGACGGGCAAGGACAGGCAACAA 4094560 37 100.0 35 NNNNNNNNNN ..................................... GGTTCATTCCTTTTTCTCCTTCTCTTATTGCATAT 4094632 37 100.0 34 NNNNNNNNNN ..................................... CTTGAGAACGGAACAGCTTATGCGGTTTTTACCG 4094703 37 100.0 36 NNNNNNNNNN ..................................... CGGCGCGTGCTGTTATGATGAAGTAATATTCATCTC 4094776 37 100.0 37 NNNNNNNNNN ..................................... TATGTTATGTTCTTTCAGATAGTCAAGATCTTCTTTG 4094850 37 100.0 39 NNNNNNNNNN ...............................T..... ACCCGTCGACTACTTGACAAGAGAAGAATTGGACACTCT 4094926 37 100.0 35 NNNNNNNNNN ...............................T..... AAAAACTAATAAAAATAAATATGTTAAGGTGTTTA 4094998 37 100.0 35 NNNNNNNNNN ...............................T..... AATGAAAATCCGCAAGGATCTCATACGTGAATTAG 4095070 37 100.0 44 NNNNNNNNNN ...............................T..... TAGAGCGGTCACTCCGAGCAGGACAAGAGCAAGGAGGGTCTTTT 4095151 37 100.0 1 NNNNNNNNNN ...............................T..... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 81 37 36 GTTTCAATCCTTGTTTTAGTGGATCTTGCTCACGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [222,211] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_003901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 679199 37 89.2 35 TAACAAAAGC --................G...........T...... AGAAGTCCAAGTAGAGAACGGTCTCCAAATCCATT 679271 37 100.0 36 CAAATCCATT ..................................... TCTATACGAAAATGAAATATTGACTGATGAAAGTAT 679344 37 97.3 36 ATGAAAGTAT ..................G.................. CCGTTTTTATACCTGTTAATATAGGACGTATACATT 679417 37 97.3 35 CGTATACATT ..................G.................. CAGTGGGTCCGACTGGCTTTAGTGGTCTCCTCAGA 679489 37 97.3 34 TCTCCTCAGA ..................G.................. CCAACCAGTTAATACGATGTGTTACGAGGATGGT 679560 37 97.3 37 CGAGGATGGT ..................G.................. CCGAAAGTTGCAGCCCTCAAAACCTTCGTCGACCTGA 679634 37 97.3 35 GTCGACCTGA ..................G.................. CCCTGAGCCTGTAACAGAGCTTGAAAGATAATAAG 679706 37 100.0 36 AGATAATAAG ..................................... CGACTGGAAACCTGCCGATATCATTTTATTCGGAAG 679779 37 100.0 36 TATTCGGAAG ..................................... CAGTGGGCGCGGAAAGAGTAATTCCCGCCACTTATA 679852 37 100.0 38 GCCACTTATA ..................................... AGCTAAAGCATTGAAAGCTTTCAGGCTTAGTGAGGCAG 679927 37 100.0 37 AGTGAGGCAG ..................................... TTGCCGATTACATGAAGGAGCACAGCAGGGACGATTT 680001 37 100.0 36 GGGACGATTT ..................................... TAATAGGATCATTGATGCAGAAATCTCCTGAGAGTA 680074 37 100.0 43 CCTGAGAGTA ..................................... CTGTTCCCGCGCTGGCAAGAGTCACCGAGGAAAATATCAAAAA 680154 37 100.0 36 ATATCAAAAA ..................................... AAATAATGCCCGCCTTCGTGAAACCAGAGCACGATG 680227 37 100.0 36 GAGCACGATG ..................................... CCCAATTTCTCAGTTTGAGAGAGAGAGTTATTTTTT 680300 37 100.0 34 GTTATTTTTT ..................................... AAAGCCTTTTTGCTGATAATCAGGAAGAGGTGGA 680371 37 100.0 37 AAGAGGTGGA ..................................... AAAGATCTGAAATCAAATAAAATCAATGAGAAAAGCA 680445 37 100.0 35 GAGAAAAGCA ..................................... TAACATCTCTATAGCCTATGGCTTTTGTATTTCCA 680517 37 100.0 37 TGTATTTCCA ..................................... ATAGTAGAGGCTATCCGATCCTCTAGGGGTTTATCAA 680591 37 100.0 36 GGTTTATCAA ..................................... GACAGCTTAACCCGTTCCTGAATGAGGCTTATCTCA 680664 37 100.0 35 GCTTATCTCA ..................................... GCTTGATCTTCTATTGACACGTTGAATGTACTTGA 680736 37 100.0 36 ATGTACTTGA ..................................... AGGTCACAGAGAGAATCAAAAATACAGTTAGAATTG 680809 37 100.0 36 GTTAGAATTG ..................................... TTTCTCAGATCCTTGCAGGGAAAGATAAGGCTATAA 680882 37 100.0 35 AAGGCTATAA ..................................... TTGTATGTGTACACATGGTGTACACATAAGGCGAA 680954 37 100.0 36 ATAAGGCGAA ..................................... AGGAAAATGTTATATCAACGAAAGAACGCGGAGGAA 681027 37 100.0 36 CGCGGAGGAA ..................................... AGTGACCTGATAGACGTAAGGAGCAATCTTCGCGGC 681100 37 100.0 38 TCTTCGCGGC ..................................... GCGACGATCACACCCATAAAAAAGTTTAACCAACTTTC 681175 37 100.0 34 ACCAACTTTC ..................................... GGTTTGTGGGGCATTGGGTGTGTCAGCATGATAG 681246 37 100.0 36 AGCATGATAG ..................................... ACGACGACTCTGACGGCATAGGGGACGTATGGGGAA 681319 37 100.0 37 GTATGGGGAA ..................................... AGATTTCTTTTACCAATAGGATACGAAAACTGTTCAA 681393 37 100.0 37 AACTGTTCAA ..................................... GGCGATAAGATGAAAAGAAACTCAACTCAAGTTAGTT 681467 37 100.0 35 CAAGTTAGTT ..................................... TGATGAATTAAATCAAATTCCTTTCGATTTTTCGG 681539 37 100.0 36 GATTTTTCGG ..................................... CATCAAAAATTAGCCCGTCTTTATCCCCATAAGGAA 681612 37 100.0 37 CCATAAGGAA ..................................... TAATTTGATAATACCTTAATCAACTCACTTTTCTCAA 681686 37 100.0 38 CTTTTCTCAA ..................................... TATCCGGGGGCAGGAGAGCACGAGGAGGGCCAGAAGAG 681761 37 100.0 35 GCCAGAAGAG ..................................... ACGTTTTCTTTTGTTCTTCCGAGGACAAGCCCGAT 681833 37 100.0 37 CAAGCCCGAT ..................................... AAGGATTCTTCAGTATTATTGCCGTCGTCCTGATCCT 681907 37 100.0 35 TCCTGATCCT ..................................... CTGAAAATATACTTTGAGCCCGCCAGCAAACGAAA 681979 37 100.0 34 GCAAACGAAA ..................................... ATAACAATCATCTGCCGAAAACTGCATAGAATTG 682050 37 100.0 36 CATAGAATTG ..................................... ATTTGCAGGTGCAACAACGTTACAGGGTGGAGAAAT 682123 37 100.0 39 GTGGAGAAAT ..................................... ATGAACAAGATGTAAATAAAGAAAATAAAGCTCTAAAAA 682199 37 100.0 38 GCTCTAAAAA ..................................... TTTATAGTGTTTTTCAGTGGATAGGTGTCACCTTTTAC 682274 37 100.0 37 CACCTTTTAC ..................................... CATGATAATCACTATATGAGATTATGTGTTTAAAGTA 682348 37 100.0 36 GTTTAAAGTA ..................................... AGTCCATCGTGCCCTGGAGTATTGAAAATGCAGTTG 682421 37 100.0 37 AATGCAGTTG ..................................... ATAATAAACCGAAAAGCGGTGTTAAGTCAGGATATTA 682495 37 100.0 CAGGATATTA ..................................... AGGGCAAAAA ========== ====== ====== ====== ========== ===================================== 46 37 36 GTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [342,112] Score: 0.18/0.18 # # Final direction: R [0.18,4.91 Confidence: HIGH] >NC_003909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1551421 26 100.0 28 NNNNNNNNNN .......................... GGTAGCGCCGGTAGCGCCCGCCGGTCCT 1551475 26 100.0 19 NNNNNNNNNN .......................... AGTAGCACCTGCAGGTCCT 1551520 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 3 26 23 TGAACGCCTTGAGGTCCTTGAGGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [31.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [833,1078] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_003909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 4310484 20 100.0 25 NNNNNNNNNN ....GG..G...GAA..... TGAACCCGTCGCTCCCGTTGGACCC 4310529 20 100.0 34 NNNNNNNNNN ............GAA..... TGCTCCCGTTGAACCTGTTGCTCCCGTTGAACCT 4310583 20 100.0 52 NNNNNNNNNN .................... TGCTCCGGTTGGACCCGTTGAACCTGTTGCTCCCGTCGCTCCTGTTGAACCT 4310655 20 100.0 52 NNNNNNNNNN .................... CGCTCCGGTCGGACCTGTTGCTCCGGTTACTCCCGTCGCTCCGGTTGGACCT 4310727 20 100.0 52 NNNNNNNNNN .................... CGCTCCGGTCGGACCCGTTGCTCCCGTTATTCCTGTCGCTCCGGTCGGACCT 4310799 20 100.0 52 NNNNNNNNNN .................... CACTCCCGTTGGACCTGTTGCTCCCGTTATTCCTGTCGCTCCCGTTGGACCT 4310871 20 100.0 34 NNNNNNNNNN .............C...... CGCTCCCGTTACTCCTGTCGCTCCCGTTACTCCT 4310925 20 100.0 70 NNNNNNNNNN ..C..........C...... CGCTCCCGTTACTCCTGTCGCTCCCGTTGGACCCGTTGCTCCCGTTATTCCTGTCACTCCCGTTGGACCT 4311015 20 100.0 52 NNNNNNNNNN .............C...C.. CACTCCGGTTGGACCTGTTGCTCCCGTTATTCCTGTCGCTCCCGTTGGACCC 4311087 20 100.0 34 NNNNNNNNNN .................... CGCTCCCGTTGAACCTGTCACTCCCGTTGGACCT 4311141 20 100.0 25 NNNNNNNNNN .................... CACTCCCGTTGGACCTGTTGCTCCC 4311186 20 100.0 34 NNNNNNNNNN .................... CACTCCGGTTGGACCTGTTGCTCCCGTTGGACCC 4311240 20 100.0 34 NNNNNNNNNN ..C..C..A...GGA..... CGCTCCCGTTGGACCCGTTGCTCCCGTTGGACCT 4311294 20 100.0 1 NNNNNNNNNN ..C.........GGA..C.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 14 20 42 GTTGCTCCCGTTATTCCTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [615,496] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_003910 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3967485 20 100.0 37 NNNNNNNNNN ..............A..... CTCTGCGGTATCATTGATAGAATCAAGTAATGCATCG 3967542 20 100.0 49 NNNNNNNNNN ........A........... ATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCA 3967611 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTGATAGAATCAAGTAATGCATCG 3967668 20 100.0 49 NNNNNNNNNN ...A....A........... ATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCA 3967737 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCG 3967794 20 100.0 49 NNNNNNNNNN .................... ATCAACTGGCTCATTCACTGATTCACTTACTAAATCAAGCAGCGCATCA 3967863 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCG 3967920 20 100.0 49 NNNNNNNNNN .................... ATCGACTGACTCATCCACTGATTCACTTACCGAATCAAGCAGCGCATCG 3967989 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCA 3968046 20 100.0 49 NNNNNNNNNN .................... ATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCG 3968115 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCA 3968172 20 100.0 49 NNNNNNNNNN .................... ATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCG 3968241 20 100.0 49 NNNNNNNNNN .................... CTCTGCAGTCTCATTGTCTGGTTCACTTACCGAATCAAGCAGCGCATCA 3968310 20 100.0 49 NNNNNNNNNN ..............C..... CTCTGCTGGCTCATTGTCTGAATCACTTAGTGAATCAAGCAGCGCATCA 3968379 20 100.0 1 NNNNNNNNNN ..............C..... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 15 20 43 ATATCATCTGGGTCTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1500,1819] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_003919 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 4522475 31 100.0 37 CTAAGGGGGG ............................... AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG 4522543 31 100.0 35 GGCGCAGGAG ............................... CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 4522609 31 100.0 34 GCTTGCCGAG ............................... CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG 4522674 31 100.0 35 ATCTGCGTCG ............................... CGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT 4522740 31 100.0 36 AGGCGATCAT ............................... TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 4522807 31 100.0 36 TCCCCCAATG ............................... GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 4522874 31 100.0 34 CCTGCAGATC ............................... CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC 4522939 31 100.0 36 TCCTGCGTGC ............................... GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 4523006 31 100.0 37 AGGGGCGCCT ............................... GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC 4523074 31 100.0 35 GCCGCGACGC ............................... GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA 4523140 31 100.0 35 CCACGGCGAA ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 4523206 31 100.0 34 CGACTTTCAG ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 4523271 31 100.0 34 CAGGGCGACT ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 4523336 31 100.0 34 ATGGCCGGAA ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 4523401 31 100.0 35 CAGCCCGTAG ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 4523467 31 100.0 34 TGCCCGCATC ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 4523532 31 100.0 34 ACCTGCGAGG ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 4523597 31 93.5 36 TCTGACGCGT T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 4523664 31 96.8 GCAGAAGGAA .G............................. AATTTAAACT ========== ====== ====== ====== ========== =============================== 19 31 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-6.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [195,132] Score: 0/0.18 # # Final direction: F [5.68,0.37 Confidence: HIGH] >NC_003911 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 2126117 22 100.0 86 NNNNNNNNNN ....G.....T........... GACCAACGAAGGCGACGAGGGCGACGAGGACGACGAAGGCAACGAGCACGACGAAGGCAACGAAGGCAACGAAGGCAACGAAGATA 2126225 22 100.0 77 NNNNNNNNNN ...................... ACAGAACGAAGCCGACGGCGGCGACGAAGGCGACGAAGGTAACGAAGGCAACGAGGGCAACGAAGGCAACGAGGACA 2126324 22 100.0 86 NNNNNNNNNN ...................... GGGTAACGAAGGCGACGAAGCCGACGAGGGCGACGAAGACAACGAGGGCAACGAGAACGACGAAGGCAACGAGGCCGACGAAGGCG 2126432 22 100.0 50 NNNNNNNNNN ...................G.. AGGCAACGAGGACAACGAAGGTAACGAAGGCGACGAAGGCGACGAAGGCG 2126504 22 100.0 65 NNNNNNNNNN ...................... GGACGGCGGCGACGAAGGCGACGAAGGCGACGAGGGGAACGAAGGCAACGAGGGCAACGAGGGCA 2126591 22 100.0 41 NNNNNNNNNN ....G..T.........A.... GGACAACGAAGGTAACGAAGGCGACGAAGCCAACGAGGGTG 2126654 22 100.0 32 NNNNNNNNNN ....G...G............. GGGTAACGAGGGCGACGAAGGTAACGAGGACG 2126708 22 100.0 20 NNNNNNNNNN ...................... GGGTAACGAGAACGACAACG 2126750 22 100.0 41 NNNNNNNNNN ........G............. GCAAGACGAAAACGACGAAAACGACGAAGGTGACGAGGCCG 2126813 22 100.0 23 NNNNNNNNNN ...................... AGACGACGAAGGCAACGAGGACA 2126858 22 100.0 35 NNNNNNNNNN ...................... GTCCGGCGACGAAGGTGATGAGGGCGACGAAGCTG 2126915 22 100.0 23 NNNNNNNNNN ...................... AGACAACGAAGGCAACGAAGGCG 2126960 22 100.0 38 NNNNNNNNNN ...................... AGGCAACGAAGACGGCGGCGACGAAGGCGACGAAGACA 2127020 22 100.0 53 NNNNNNNNNN ..............A....... GGACGACGAAGGCGACGAAGGCGACGCCAGCGATCCCTATGACAATGAGGGCG 2127095 22 100.0 62 NNNNNNNNNN ....G........G.A...... AGGCGACGAGGACGACGAGAGCAATGAGGGCAACGAAGGCCCCCAGACCGACGATGAGGATG 2127179 22 100.0 41 NNNNNNNNNN ...................T.. AGGCAACGAAGAAATAGAAGGCCAGGAAGACGACGAGGACG 2127242 22 100.0 32 NNNNNNNNNN ........G............. GGATAACGAGTGGGACGAGGATAACGAGGACG 2127296 22 100.0 23 NNNNNNNNNN ........G......C...... AAACGACGAGGACGACGAAGGCA 2127341 22 100.0 32 NNNNNNNNNN ........G......C...... GGACGACGAAGACAACGAAGACGACGAAGGCA 2127395 22 100.0 23 NNNNNNNNNN ........G......C...... AAACGACGAAGACAACGAATTCG 2127440 22 100.0 50 NNNNNNNNNN ........G.......T..... GGGCAACGAGGGCAACGAGGGCGACGAAGACGACGAATTCGACGAGGGCG 2127512 22 100.0 44 NNNNNNNNNN ........G............. GGGCGACGAAGGTAACGAGGGCGACGAGGGCCAGATCGACGGCG 2127578 22 100.0 41 NNNNNNNNNN ......A.G............. AGATGACGAAGCCGACGAAGGTGATGAAGGCGACGAAAGCG 2127641 22 100.0 32 NNNNNNNNNN ...................... AACCAATCTGAACGACGAAAACGACGAGGGTG 2127695 22 100.0 32 NNNNNNNNNN ....G..T.............. GGACGACGAGTTCGACGAAAACGACGAATTCG 2127749 22 100.0 32 NNNNNNNNNN ....G..T.........A.... AGGCGACGAAGACGACGAATTCGACGAAGGCG 2127803 22 100.0 50 NNNNNNNNNN ....G.A.G............. GTCCGACGAAAGCGACGAGCACGACGAAAACGACGAAGGCGACGAAGGCG 2127875 22 100.0 38 NNNNNNNNNN ....GTA.G............. AGGCGACGAGGCCGAAACCGGCACCGGCGATGACGGTG 2127935 22 100.0 32 NNNNNNNNNN ....G.....T.....T..... AGCCGATATCGACAATCGTGGCGACGAAGGCG 2127989 22 100.0 23 NNNNNNNNNN .....AA.G.......T..... AGCCGACGAAGGCGACGAAGCCG 2128034 22 100.0 32 NNNNNNNNNN ....GCA.G.......T..... AGGCAACGAAGGTGACGAAGCCGACGAAGGCG 2128088 22 100.0 41 NNNNNNNNNN ....G.A.G......C...... AGATGACGAAGGCGACGAAGACAACGAAGGTGACGAAGCTG 2128151 22 100.0 41 NNNNNNNNNN ......A.G.....AA...... GCACGACGAATATGATGAAGGCGACGAATCTGACGAGGACA 2128214 22 100.0 32 NNNNNNNNNN ....G.A.G......A.A.... AGGCAATGAAGGCAATGAGAACGACGAGCTCG 2128268 22 100.0 50 NNNNNNNNNN .......TG........A.... GGGCGATGAAAACGACGAAGGCAACGAATTCGATGAAGGCGGCATAGACG 2128340 22 100.0 41 NNNNNNNNNN ....G..TG............. AGACGACGAGGGCGACGAAAACGACGAGGACGACGAAAACA 2128403 22 100.0 32 NNNNNNNNNN ........G......A...... AAACGACGAATACGACGAAGGTGACGAAGCCG 2128457 22 100.0 41 NNNNNNNNNN ........G.....AA...... AGACGACGAAAACAACGAAGGCGACGAAAACAACGAGGATA 2128520 22 100.0 32 NNNNNNNNNN .....AA.G.....AA...... GTTCGACGAAGAAAACGAAGGCAGCGAAGGCG 2128574 22 100.0 59 NNNNNNNNNN ......A.G......C...... AGGCGACGAAGACGACGAAGGCGACGAAGCCGACGAGTATGACGAAGGCGACGAAGGCG 2128655 22 100.0 59 NNNNNNNNNN ......A.G............. AAACGACGAGGACGACGAAGGTAACGAAGAAAACGAGGTCCACGACGACAACGACGGCG 2128736 22 100.0 86 NNNNNNNNNN ........G............. AGGCAACGAAGGAGACGAAGGAGACGAAGGCAACGAAGGCAACGAGGGCGACAGCCAGGCCGATGCCAACGAAGGAGATGAGGGAG 2128844 22 100.0 50 NNNNNNNNNN ......A..........A.... AGGTGACGAAGGCGACGAAGACGACGAAGGCAATGAAAACGACGAAGGCG 2128916 22 100.0 1 NNNNNNNNNN ........G............. NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 44 22 43 ACGAAGGCAACGAAGGCGACGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [13-50] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [475,534] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_003919 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 27399 17 100.0 37 TATGGCGCCC ................. TCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACG 27453 17 94.1 37 ACCAAGAACG .......C......... GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG 27507 17 100.0 40 ACCGGTGGCG ................. TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC 27564 17 94.1 TCCGGCGGGC .............T... AGCATCCTCGC ========== ====== ====== ====== ========== ================= 4 17 38 TGGAAACGGTCAACGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [283,517] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_004088 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1291480 28 100.0 34 NNNNNNNNNN ............................ CCTGATACAATCATCCTATTTGTCCTATCCAGAA 1291542 28 100.0 32 NNNNNNNNNN ............................ GACAAGAACCGAATCTTTCGCCGTGCCGTAAA 1291602 28 100.0 33 NNNNNNNNNN ............................ CCGAAATCATCAGATGTAATTAAGATTTTTGCT 1291663 28 100.0 32 NNNNNNNNNN ............................ AGACTGATGCAAGATGGCGGTATGCGTACAGA 1291723 28 100.0 1 NNNNNNNNNN ........................T.G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [356,5] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_003923 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 290103 23 100.0 32 NNNNNNNNNN GTT.TA........C...A.CAT AGAAGCTGGCGGAAAGTCAGCATACAATAATG 290158 23 100.0 32 NNNNNNNNNN ....................... CAGAGAATTTCGAAAAGAAATTCTACAGGCAA 290213 23 100.0 33 NNNNNNNNNN ....................... TAGAAGCTGGCGGAAAGTCAGCTTACAATAATG 290269 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 32 TGCAAGTTGGCGGGGCCCCAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [67,295] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_004116 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 908164 36 100.0 30 NNNNNNNNNN .................................... TAATTGCCAATGCTTACAATATCTTCGTCA 908230 36 100.0 30 NNNNNNNNNN .................................... ATGTTCTGAATTACCTTTCTCGACACTCCG 908296 36 100.0 30 NNNNNNNNNN .................................... ACCATCAAGGCTCTTATCTGCAGATTGTTA 908362 36 100.0 30 NNNNNNNNNN .................................... AAATGGTTGCCAATGACTTTCTAGAGTGAT 908428 36 100.0 30 NNNNNNNNNN .................................... ACAAAATCTTTTGTTGCTCCTGGACGTATT 908494 36 100.0 30 NNNNNNNNNN .................................... ATGTAAGGTATTGTAAAACTTCTTCTTGCG 908560 36 100.0 30 NNNNNNNNNN .................................... ACTGTTCCTATAATTAAAATAAAAGAGGTA 908626 36 100.0 30 NNNNNNNNNN .................................... TGTTCCAGTAAAAAGTAATTTTAAAGCATT 908692 36 100.0 30 NNNNNNNNNN .................................... CGCTCGATTGATGCTATCAACTATATTGAA 908758 36 100.0 30 NNNNNNNNNN .................................... TTCTTCAAGAGAACTTGTAGAACAGCTTCA 908824 36 100.0 30 NNNNNNNNNN .................................... AAGGTACTTTTAGCTTGTTCTTGTGGTGTT 908890 36 100.0 30 NNNNNNNNNN .................................... ACAGCTACTGTAAATTCTGCTTTTACGGTT 908956 36 100.0 30 NNNNNNNNNN .................................... TAGTGCAGTTGTCAAGGAGATTGTGAGCGA 909022 36 100.0 30 NNNNNNNNNN .................................... TTTAACCTTTGAAAATGTGAAAGGCTCGTA 909088 36 100.0 30 NNNNNNNNNN .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 909154 36 100.0 30 NNNNNNNNNN .................................... TTTTACACACGATGTCAGATATAATGTCAA 909220 36 100.0 30 NNNNNNNNNN .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 909286 36 100.0 30 NNNNNNNNNN .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 909352 36 100.0 30 NNNNNNNNNN .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 909418 36 100.0 30 NNNNNNNNNN .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 909484 36 100.0 31 NNNNNNNNNN .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 909551 36 100.0 30 NNNNNNNNNN .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 909617 36 100.0 29 NNNNNNNNNN .................................... TTTTACCAATGCTTCCATATCGCTTATAT 909682 36 100.0 30 NNNNNNNNNN .................................... TGGTTATACATTTACTAATCCATCAGCATT 909748 36 100.0 30 NNNNNNNNNN .................................... AAGCTAATTCTCATCTCACCGAGATGGATA 909814 36 100.0 1 NNNNNNNNNN ...................ATT.TGCTAGGAC.TCA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 26 36 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,256] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_004088 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1902329 31 100.0 29 TTATCTTACT ............................... TGCGCCAAAGAAAATGCCATTCAGATAAT 1902389 31 93.5 29 TTCAGATAAT .........T...................A. TACTAGAAGCTTGCCCATCTTACCTTTTC 1902449 31 100.0 TTACCTTTTC ............................... ATGAAAGACATTGTTCGCCAGTCCCCTGA ========== ====== ====== ====== ========== =============================== 3 31 29 GTTCACTGCCGCACAGGCAGCTTAGAAAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [336,388] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_004193 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 3168886 33 100.0 19 NNNNNNNNNN ...T..A.T..A..AC................. TTCCGATCTCTCCTATTTA 3168938 33 100.0 19 NNNNNNNNNN .....T..T..................C..... CCACGATTTCTCACGTTTA 3168990 33 100.0 19 NNNNNNNNNN ................................. CCATGATTTCTCACCTTTA 3169042 33 100.0 19 NNNNNNNNNN ................................. TTTCGGTTTCTCCTGTTTA 3169094 33 100.0 19 NNNNNNNNNN ..G.............................. CCATGATTTCTCACCTTTA 3169146 33 100.0 1 NNNNNNNNNN ...............ATG......A..C....C NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 6 33 19 TTTGGGTTAGAGAGCTGCTCTATTGACTACTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.61%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [174,133] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_004547 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4124152 28 100.0 33 NNNNNNNNNN .GAA..G..................... GGGTTGCCTCGGCCTGAACAGCGATCTCGCGTG 4124213 28 100.0 32 NNNNNNNNNN ..........A................. TTGAAATTAGTGACGTGAGCAGAATCGTAAAC 4124273 28 100.0 32 NNNNNNNNNN ............................ CGATACTCGGATACGCTCCCAGACCTTATCGA 4124333 28 100.0 32 NNNNNNNNNN ................G........... AACACGCCGCGCGATTTTGTCCACAATGCGCA 4124393 28 100.0 32 NNNNNNNNNN ................G........... TGTCGAGCGCTGATTCGTCGGTCACTGGATAC 4124453 28 100.0 32 NNNNNNNNNN ................G........... TCCATAGTCCTCGGAAGGGACGACGATGTGAC 4124513 28 100.0 32 NNNNNNNNNN ............................ CATTAATTGACGTCTCTCTATCAATTATCTGT 4124573 28 100.0 32 NNNNNNNNNN ............................ CCGAGCCTGTATTACAGGTGGTTATGGCGACA 4124633 28 100.0 32 NNNNNNNNNN ............................ ACGCTTGATATTGCTTATGGCGTGTTAGTTCA 4124693 28 100.0 32 NNNNNNNNNN ............................ GATCGGCAAAGATAATCAGGCACTCATCACCG 4124753 28 100.0 32 NNNNNNNNNN ............................ TGAATGAGCCGGCCAATCTATATCACTACACT 4124813 28 100.0 32 NNNNNNNNNN ..................T......... GGCGCGTCAGTGAAGTGGATGTATCCGTGCCA 4124873 28 100.0 32 NNNNNNNNNN ................GT.......... GCGGGGGCTAATGTGTCTGAGGCTGGTAGATC 4124933 28 100.0 32 NNNNNNNNNN ................G........... CCAGACCGCAGCAACTACCAGTTAGCTCAACA 4124993 28 100.0 32 NNNNNNNNNN ............................ GAGCAATTCGCGCATGAGTTCGCGTCTACGCT 4125053 28 100.0 32 NNNNNNNNNN ............................ GCGTTAGGCTCGTCGGTGTAGATCAACTTTCC 4125113 28 100.0 32 NNNNNNNNNN ............................ TCTTTGTAATCACCTGTACGGCTGGCCCACAC 4125173 28 100.0 32 NNNNNNNNNN ............................ TTACGGACGCAATCTATGTGCCGTGTAACGAT 4125233 28 100.0 32 NNNNNNNNNN ............................ ACGCTGCGTAAGCTGGCAACCGGTGAGGTGCA 4125293 28 100.0 32 NNNNNNNNNN ............................ TTTGTCCTTGAGCCTGACCGCTTCCGCCATCG 4125353 28 100.0 32 NNNNNNNNNN ............................ CTGTCGCAGTATTTGACCCACGACGTGATGCT 4125413 28 100.0 32 NNNNNNNNNN ............................ AGCTTGCGTTGCTCGTCTGTCAAATTGCGGGT 4125473 28 100.0 32 NNNNNNNNNN ............................ AGGCGATGGTGTCGTGGTCTGACCCTGCAAAC 4125533 28 100.0 32 NNNNNNNNNN ............................ AACCGTCGCTCGCTGGCCACTGTACGATTCGC 4125593 28 100.0 32 NNNNNNNNNN ............................ ACTCTGTTATTCCCCAACTGGCGTATGCCGAG 4125653 28 100.0 32 NNNNNNNNNN ............................ CCTGACGGCAACGCCGACGCCGATCCGACACA 4125713 28 100.0 32 NNNNNNNNNN ............................ AATCAATGGCTCAGGGGATTCTACAACCCTAA 4125773 28 100.0 32 NNNNNNNNNN ............................ GCATCCGTCCAGACCGTATCGATAGTCTCTGC 4125833 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 29 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [256,297] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_004547 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4135961 28 100.0 32 AATAGGAACG ............................ AGCCTGAACCCGTCCGATTATCAAGATGGGAA 4136021 28 100.0 32 AAGATGGGAA ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 4136081 28 100.0 33 AAGGCGGCGA ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 4136142 28 100.0 32 CATATTGCAT ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 4136202 28 92.9 32 CAAAGATAAC .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 4136262 28 92.9 32 CTCAGTGACC A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 4136322 28 96.4 32 GTACGATAAA .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 4136382 28 100.0 32 CATAACGCGC ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 4136442 28 96.4 32 CCATAAAGAA .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 4136502 28 96.4 CGAACGCAAC .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC ========== ====== ====== ====== ========== ============================ 10 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [290,102] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_004342 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3163660 36 100.0 35 NNNNNNNNNN ACTT.C.A..A.CG.G.....G.............. TTGATTGGTGCAGTTGTGCTTGTTTTGATTGGTGT 3163731 36 100.0 35 NNNNNNNNNN .................................... CCGTTCTGATTTTTTCTTTTCCTTCCTTTTGTTAT 3163802 36 100.0 36 NNNNNNNNNN .................................... CAGTAGATTTTGGATACACAAACCCGTTTGTGTTTC 3163874 36 100.0 35 NNNNNNNNNN .................................... GAATACAACCTCTTCAAAAAAGAGGAACCGGCGTA 3163945 36 100.0 1 NNNNNNNNNN ............................A.TTAG.T NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [773,518] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_004342 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3163253 37 100.0 34 NNNNNNNNNN ..................................... CCGTTCTGATTTTTTCTTTTCCTTCCTTTTGTTA 3163324 37 100.0 34 NNNNNNNNNN ..................................... ACCCCACGATACTACCTGTCAGACCGTGCCCGGA 3163395 37 100.0 34 NNNNNNNNNN ..................................... GCACTCCTCGAACTGGTAAAACTACCGATGCTCG 3163466 37 100.0 1 NNNNNNNNNN C............................G.TTAG.A NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 34 TCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [366,996] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_004342 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3164839 36 100.0 34 NNNNNNNNNN ..T.CA.A..TCGG.......G.............. GAATAACTCGTTCGGAAAGCGTTCTGCGGATCTT 3164909 36 100.0 37 NNNNNNNNNN .................................... TCGTAAAGATCGTCTGCGTGTTCGTCGTGATACGTGT 3164982 36 100.0 36 NNNNNNNNNN .....................G.............. AGCATAGCGGACGTGTTCTTTGTTCGTTTTATCGAA 3165054 36 100.0 36 NNNNNNNNNN .................................... AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC 3165126 36 100.0 1 NNNNNNNNNN ............................A.TTAG.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1952,329] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_004350 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1327814 36 100.0 30 NNNNNNNNNN A....A.T.AATCAGT..CT....TG.......... TCAAATGTAGTAGTTACTTTCTTTTCACAT 1327880 36 100.0 30 NNNNNNNNNN .................................... TGTGGCAAGTCATGTCCGAATACATAGGCA 1327946 36 100.0 30 NNNNNNNNNN .................................... GTTTGTCTATTGTCTAATTGAAAATATTTA 1328012 36 100.0 30 NNNNNNNNNN .................................... CTAACTATGATGACACAACAGCTTTTAGCG 1328078 36 100.0 30 NNNNNNNNNN .................................... AGAGCACTAACTGCGCTAGCTGGTTCAATC 1328144 36 100.0 30 NNNNNNNNNN .................................... TCACCATATTAATTAATGGCGTTTCCTTTT 1328210 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 30 GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,156] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_004631 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2912041 29 100.0 32 NNNNNNNNNN GT........................... GGACAGCAACCCGTGTCGGATATCAGACAGAT 2912102 29 100.0 32 NNNNNNNNNN ............................. ACGCGAATCGCCAATCGCCGCCGCGTGAATTG 2912163 29 100.0 32 NNNNNNNNNN ............................. CCACGATGTATGCCGACCGTGATTTTTACCGC 2912224 29 100.0 32 NNNNNNNNNN ............................. AGATACGCCTTTACGTCGCCCTCTTTGGCGCG 2912285 29 100.0 32 NNNNNNNNNN ............................. ATTAAAAAAGATTAATGTTGGTTATAGTTTTA 2912346 29 100.0 32 NNNNNNNNNN .................T........... TAAAACACCGGTTGCGCAACCTCCGCGGGGAT 2912407 29 100.0 1 NNNNNNNNNN .........................T.GG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 7 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,112] Score: 0.18/0.18 # # Final direction: R [0.41,1.69 Confidence: MEDIUM] >NC_004368 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1588776 26 100.0 46 NNNNNNNNNN ......A....G.............. CGTGGCACTCATTGAAGCGCTAGTGCTGGCTGACATTGACGCACTC 1588848 26 100.0 46 NNNNNNNNNN .....A.....G.............. CGACGCACTCATTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTT 1588920 26 100.0 46 NNNNNNNNNN .....A.AA..T............A. TGACGCACTCGTTGAGGCGCTAGTGCTAGCTGACGTCGAGGCACTC 1588992 26 100.0 46 NNNNNNNNNN A....A..................A. CGAGGCACTTGTTGAAGAACTTGTGCTGGCTGACATTGACGCACTC 1589064 26 100.0 46 NNNNNNNNNN .......................... CGACGCACTCATGGAAGCACTTGTGCTGGCTGACGTCGAGGCACTC 1589136 26 100.0 46 NNNNNNNNNN A......................T.. CGATGCACTGGTACTTGCACTTGTGGAAGAACTTGTACTTGCCGAT 1589208 26 100.0 22 NNNNNNNNNN ..............A..T.....T.. GGAAGCACTCGTACTTGCACTT 1589256 26 100.0 34 NNNNNNNNNN ..G..A.....G..A..T.....T.. CGATGCACTCATTGAGGCGCTAGTACTTGCACTT 1589316 26 100.0 58 NNNNNNNNNN ..G..A..A..G.............. CGATGCACTCATTGAGGCGCTAGTACTGGCTGACGTCGATGCACTGGTACTTGCACTT 1589400 26 100.0 46 NNNNNNNNNN ..G..A.....CA.A..T........ GGATGCACTGATACTTGCACTTGTGGAGGCGCTCATACTTGCTGAC 1589472 26 100.0 22 NNNNNNNNNN ..G..T..A..G..A..T........ GGATGCGCTCATACTTGCTGAT 1589520 26 100.0 22 NNNNNNNNNN ..G..T..A..G..A..T........ GGAAGCGCTAGTACTTGTTGAC 1589568 26 100.0 22 NNNNNNNNNN ..C.....A..G..A.....ACTG.. TGAAGCACTAGTACTTGCACTG 1589616 26 100.0 22 NNNNNNNNNN ...........CA.A..T..ACTT.. GGAAGCGCTAGTACTTGCACTT 1589664 26 100.0 22 NNNNNNNNNN ...........CA.A..T.....G.. GGAAGCACTGGTACTGGCACTG 1589712 26 100.0 34 NNNNNNNNNN ..............A.........A. TGAGGCGCTAGTACTTGCTGACGTGGATGCACTC 1589772 26 100.0 46 NNNNNNNNNN A......................T.. GGAAGCACTGGTTGAAGCACTGGTTGAAGCACTGGTTGAAGCACTG 1589844 26 100.0 22 NNNNNNNNNN .......G...G.............. GGATGCGCTCATACTTGCTGAT 1589892 26 100.0 22 NNNNNNNNNN ..G..T..A..G..A..T........ GGAAGCGCTAGTACTTGTTGAC 1589940 26 100.0 22 NNNNNNNNNN ..C.....A..G..A.....ACTT.. TGAAGCACTAGTACTTGCACTG 1589988 26 100.0 22 NNNNNNNNNN ...........CA.A..T..ACTT.. TGAAGCGCTAGTACTTGCACTT 1590036 26 100.0 34 NNNNNNNNNN ...........CA.A..T.....G.. GGAAGCACTGGTTGAAGCACTGGTTGAAGCACTG 1590096 26 100.0 46 NNNNNNNNNN .......................... CGAGGCACTCATTGAAGCACTTGTGCTGGCTGACATCGACGCACTC 1590168 26 100.0 46 NNNNNNNNNN A......................T.. GGAAGCACTGGTTGAAGCACTGGTTGAGGCGCTGGTGCTGGCTGAC 1590240 26 100.0 34 NNNNNNNNNN .......................... TGAGGCACTCGTTGAGGCGCTGGTGCTGGCACTT 1590300 26 100.0 46 NNNNNNNNNN ..G..A........A..T........ GGATGCACTCGTACTTGCACTTGTTGAAGCACTCATACTTGCACTT 1590372 26 100.0 22 NNNNNNNNNN .....A..A..T...........T.. CGAGGCACTCGTTGAGGTGCTG 1590420 26 100.0 46 NNNNNNNNNN .....A.....G.............. CGACGCACTCATGGAAGCGCTGGTACTTGCTGATGTCGAGGCACTC 1590492 26 100.0 1 NNNNNNNNNN A.G..A.....G..A..T.....T.. NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 29 26 35 GTTGAGGCGCTAGTGCTGGCTGACGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [33-46] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [537,2370] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_004368 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 951908 36 100.0 30 TTTCTACGAG .................................... AAAAACTCTTACCACTTACATACATGTATG 951974 36 100.0 30 TACATGTATG .................................... GCTGGAGATTTTACAAGCAGTTTGAATTTC 952040 36 100.0 30 TTTGAATTTC .................................... ATCACACCAGTCGTTATGATGGATGACTAT 952106 36 100.0 30 GGATGACTAT .................................... TGTCAACAGTACGTGAGACGAGTGTGTAGG 952172 36 97.2 30 AGTGTGTAGG ..............T..................... TGAAGTTGATGGATATGTTGATTTAGAGCT 952238 36 97.2 30 ATTTAGAGCT ..............T..................... TAATCATTTTATGAGAGATACCGCCTCAAG 952304 36 97.2 30 CCGCCTCAAG ..............T..................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 952370 36 97.2 30 ATCTTGCGGA ..............T..................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 952436 36 97.2 30 ATCTTGCGGA ..............T..................... AATCACTTCTGCATAAATATCTTTTACTTC 952502 36 97.2 30 CTTTTACTTC ..............T..................... AAACATCCGCAACGGGATAAATAAAGCTAG 952568 36 97.2 30 ATAAAGCTAG ..............T..................... AGTTTCTTGTGGGTTAGCTTGTCCACCGTA 952634 36 100.0 30 GTCCACCGTA .................................... GAACATGAAAGATTTTAAAAAAGAACATTT 952700 36 100.0 30 AAGAACATTT .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 952766 36 100.0 CGAATGCTGA .................................... GATGGTACAAAATCATTTGTTGGTACTGAT ========== ====== ====== ====== ========== ==================================== 14 36 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,54] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_004369 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1241444 36 100.0 36 NNNNNNNNNN .................................... TGGTTGGTCTTGGTGGGGCACGGGAACTTATCGAAG 1241516 36 100.0 33 NNNNNNNNNN .................................... CCAGGATCGGATGATGCTGGTGAGCCAGAGGAT 1241585 36 100.0 37 NNNNNNNNNN .................................... TTTTGCGGACGATGTAGTCCCCAACCTTGATGCCGGG 1241658 36 100.0 35 NNNNNNNNNN .................................... ACATAGGCATCTTCAGCTTCGCCAAGTCCATTGAG 1241729 36 100.0 38 NNNNNNNNNN .................................... ATCAGCTGATCGGTGCCCGTCAGCACGCACCGCGAACC 1241803 36 100.0 35 NNNNNNNNNN .................................... AGACCTTCATACAGGTTTACAGCACCAGTAAAGCT 1241874 36 100.0 35 NNNNNNNNNN .................................... GACGCCCCGGACTCAAGCGCGAAGATCTTCTCGAT 1241945 36 100.0 35 NNNNNNNNNN .................................... GCAGGATGGAACGACACCCCCATTGCTGATGGAGG 1242016 36 100.0 35 NNNNNNNNNN .................................... TATGATCGAGTGACGCGGACCCGGGGTGAGGATAA 1242087 36 100.0 34 NNNNNNNNNN .................................... CCGCGATTGCCCTGCCGAGTCGTGCGCCCACCCC 1242157 36 100.0 34 NNNNNNNNNN .................................... TGAGGACCTCACCATCTACGACACGTCCGATCAG 1242227 36 100.0 35 NNNNNNNNNN .................................... TAAGGCACCAGATCACAATGGTGCACCCCGTGTGT 1242298 36 100.0 35 NNNNNNNNNN .................................... CAGGGCGCCCGGGTCCCAGCCGGGGTAGCTGGCCT 1242369 36 100.0 36 NNNNNNNNNN .................................... GTCGGGCGTCGACGCCACGTCTGGCGAAGTCGAACG 1242441 36 100.0 35 NNNNNNNNNN .................................... GTTGTTCATGATGCGTCTTTCCTGGGGGGCTAGGG 1242512 36 100.0 34 NNNNNNNNNN .................................... GGCTGCAGCGGGCGCTGTGGAGCTCGCTGGAAGA 1242582 36 100.0 36 NNNNNNNNNN .................................... GGAGGGGTGCCACTGGTAGAGCCAGCCGTAGTCGTC 1242654 36 100.0 39 NNNNNNNNNN .................................... TGGTGCGCCCTCGATGAGGCGGTTGACCTTCTCCACCAG 1242729 36 100.0 34 NNNNNNNNNN .................................... GAATCGTAGAGGATGCCATCCTCCACAAAGCAAA 1242799 36 100.0 37 NNNNNNNNNN .................................... TTCCTCATCGACGCCACGATCGATTCCATAGTGGTCC 1242872 36 100.0 39 NNNNNNNNNN .................................... GTCCACAGAATCCCCCCAGAAACTGGGGCCGATCTCGTC 1242947 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 35 CCCTCAATGAAAGGCCGTCGAACTAACGACGGCAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [152,308] Score: 0.18/0.18 # # Final direction: R [0.37,0.82 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1573299 30 100.0 34 TTACAGCAAT .............................. GTGTGTTCCGTATCAATCTAGGTCGGCAAACTTC 1573363 30 100.0 35 GGCAAACTTC .............................. AGATGTTTTAACAACGATAATGAATGCTTACAAAA 1573428 30 100.0 37 GCTTACAAAA .............................. TATTAATTCTCCTTTTGAGCTATGCTCATATATATTT 1573495 30 100.0 35 ATATATATTT .............................. GAGCTACAAGATAAATACAAAGATGTGGATTTAGT 1573560 30 100.0 36 TGGATTTAGT .............................. ATATGCAATAGCCATATTTCAAAGATATTCAAAGGA 1573626 30 100.0 ATTCAAAGGA .............................. CACTGTAAAA ========== ====== ====== ====== ========== ============================== 6 30 35 ATTTAAATACAACTCTTGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [500,214] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1571158 30 100.0 36 GCAGCATAAC .............................. AGGTTGGGACTGTTGGGGAAATGAAGTAAATCTTAA 1571224 30 100.0 34 TAAATCTTAA .............................. ACCCTAATTGTAGAACTACAATAGTTCCGTATTT 1571288 30 100.0 36 TTCCGTATTT .............................. ACAGTAACATGAATACACTCATGTTACTGTTTTTCA 1571354 30 100.0 CTGTTTTTCA .............................. CACTGTAAAA ========== ====== ====== ====== ========== ============================== 4 30 35 ATTTAAATACAACTCTTGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [637,206] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1217308 30 100.0 36 AGATGAACGC .............................. TTAAATGAAGGTACTAAATTTAAGGTAAGAATGGTG 1217374 30 100.0 36 AAGAATGGTG .............................. AGCATTCCTCTATCTCCATTAACTACTGAAAAAGGA 1217440 30 100.0 36 TGAAAAAGGA .............................. GCTATAAGAATAATTCTAATTTTATCCAAGGAACTG 1217506 30 100.0 38 CAAGGAACTG .............................. TTCCAATTTTACTAGCTGCTACCCCAACGCCTAATAAT 1217574 30 100.0 37 GCCTAATAAT .............................. TAAATATATTACTTCCTTCTTGCACTGTAGGTTTTTC 1217641 30 100.0 35 TAGGTTTTTC .............................. TTGTTCGTAACTGTTAAAGCTATCTTTCTTTATGC 1217706 30 100.0 37 TTCTTTATGC .............................. AGAGCCTAGTTTCCTAAGCCCTTATAACCAACTTACC 1217773 30 100.0 39 CCAACTTACC .............................. ATACAATGCTCCATGGAAAGGACTCCACTTAGATATATA 1217842 30 100.0 36 TAGATATATA .............................. CCCACATCATTAAAGGATATAAAATTACCACCTTCC 1217908 30 100.0 37 ACCACCTTCC .............................. GTTTTAATATTAATATCGGCAAGTGCTAATTCATATG 1217975 30 100.0 37 AATTCATATG .............................. GTTTTAATATTAATATCGGCAAGTGCTAATTCATATG 1218042 30 100.0 36 AATTCATATG .............................. AACTGCACAGTATCACCGCTAGCTTTTAATTCTTTA 1218108 30 100.0 36 TAATTCTTTA .............................. TTTTGAAGTATATTATAAAGGCACAGTAACACGCCC 1218174 30 100.0 35 TAACACGCCC .............................. GCTTTAACTCTTAAAAAAGATAAAGTTCTAAATTC 1218239 30 100.0 36 TTCTAAATTC .............................. AAGATGCAGCCAACGCACTTGGATATATGGCTTTGG 1218305 30 100.0 36 ATGGCTTTGG .............................. GGTAATGTAAGTAATTCTACAACCAATAATAGCAAT 1218371 30 100.0 36 TAATAGCAAT .............................. ATACAGAATACAAGATTATAGTTAGTGGATATAGAA 1218437 30 100.0 35 GGATATAGAA .............................. AATGAAGTCAAATAATAACATACCATTTTGTGCTC 1218502 30 100.0 36 TTTTGTGCTC .............................. TTTAAATCTGGTTTATTTTTTACATTCTTCCAATCC 1218568 30 100.0 37 CTTCCAATCC .............................. AAGTGCGTTATTTACGCCTTCTATATGTCCGAATACC 1218635 30 100.0 36 TCCGAATACC .............................. TTTTCATTAGCAATTCCTTTGTACTGCCATCTTCCG 1218701 30 100.0 38 CCATCTTCCG .............................. CCTAGTACGCCCAGCATACCCAAAAAAGAACTACTTAA 1218769 30 100.0 38 AACTACTTAA .............................. CTGGAAAGAGGCAATAAAGCATTAGGAATAATAAAATG 1218837 30 100.0 38 TAATAAAATG .............................. CTTACTAACACTTTCAGACCTAGTATTAAAATAATTTT 1218905 30 100.0 37 AAATAATTTT .............................. GTGTTACATCTCCCAATTTCTCCTCATAATACTTTAA 1218972 30 100.0 36 AATACTTTAA .............................. GCTATAGCTAGTATAGTAGATACGTTGCGAGAATGG 1219038 30 100.0 37 GCGAGAATGG .............................. AATTAATATTGGCAGTATATGCTATACCATCTATAGC 1219105 30 100.0 38 CATCTATAGC .............................. TATCTAACTCAATATTTTCTTCTTTTACATCCTGTTTA 1219173 30 100.0 36 ATCCTGTTTA .............................. AAATTAATAAAGATAGTAGGTTAAAGGGTATATTAG 1219239 30 100.0 36 GGTATATTAG .............................. TTATAAAATTCTATTTCTAGTTCTTCTTGAGTATAT 1219305 30 100.0 35 TTGAGTATAT .............................. GTCGACCCATTGGAGTTAGACAGATGGGATTTTCA 1219370 30 100.0 36 GGGATTTTCA .............................. TTAGCATCTATAATATTTACTTCTTTAATAGTTCTT 1219436 30 100.0 35 AATAGTTCTT .............................. ATATGTGATGATGAATTAGAGAAAGTGCTTGAAAG 1219501 30 96.7 TGCTTGAAAG ........................A..... TGACTGTAAC ========== ====== ====== ====== ========== ============================== 34 30 36 GTATTAGTAGCACCATATTGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [470,85] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_004671 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 528 20 100.0 34 NNNNNNNNNN .................... CTTCGGATAAACATGATAAAATCGGCGTTTCTTT 582 20 100.0 34 NNNNNNNNNN .................... GTCCAGAAGAATCCAATAATACCAGTACTTTGTT 636 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 3 20 34 CGAAAGTGGGAAAAACCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [529,626] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1592010 30 96.7 35 TAATGTATAT -............................. GTGCTGCACTTCTAGAACTTAAATTACATTCCTTT 1592075 30 100.0 34 ACATTCCTTT .............................. ATATAGAGAAATCACTTAAAATAATAGAATTTGC 1592139 30 100.0 34 TAGAATTTGC .............................. AAAATAAAAGGAAGTGGTAATATAGTGAAAACAT 1592203 30 100.0 34 GTGAAAACAT .............................. ATCGACTAAAGATTATATTTGGGGGTAAGATAAA 1592267 30 100.0 36 GTAAGATAAA .............................. GAATGCTACACAATTTGCTAACAATGCTATGAATGA 1592333 30 100.0 36 CTATGAATGA .............................. GCATCAAACATAGTTACAGCAATTGTAGTTACAAAG 1592399 30 100.0 AGTTACAAAG .............................. CACTGTAAAAT ========== ====== ====== ====== ========== ============================== 7 30 34 ATTTAAATACAACTCTTGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [105,1017] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_004722 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 4625238 21 100.0 78 NNNNNNNNNN T.....G....AT......GC TGAATTTCCTCAAGTGCTACAAATGTCTCTACTACAGGCGCTTTTGTTTCTGCAATCACTTCTGTTTCTTCTGCTTCC 4625337 21 100.0 69 NNNNNNNNNN ..................... GCTTCCGCAATTACTTCCACTTCTTCCGTTTCCGCAATTACTTCCACTTCTTCTGACTCTTCTGTTTCT 4625427 21 100.0 51 NNNNNNNNNN .T................... AGCTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTCTGTTTCT 4625499 21 100.0 51 NNNNNNNNNN ..................... GACTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTTCGCTTCC 4625571 21 100.0 51 NNNNNNNNNN ..................... GACTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTTCGCTTCC 4625643 21 100.0 51 NNNNNNNNNN ..................... GACTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTTCGCTTCC 4625715 21 100.0 42 NNNNNNNNNN ..................... GACTCTTCTGTTTCTACAATCACTTCTACTTCTTCTGCTTCC 4625778 21 100.0 36 NNNNNNNNNN ..................... GTTTCCATAACTACTTCTTCTGGCTCTTTCGTTTCT 4625835 21 100.0 57 NNNNNNNNNN ..................... TCCACTTCTTCAGGTGCCTCTGTTTCCATAACTACTTCTTCAAGCTCTTCCGTTTCT 4625913 21 100.0 1 NNNNNNNNNN ...........T....T.GAC NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 10 21 54 GCAATTACTTCCACTTCTTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.90%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2464,1227] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_004722 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================================== ====== 5209576 62 100.0 40 GCTTCGCCAA .............................................................. TTTTCTGTTTCGCTAATGCTGCCGCTTTTGCTTTTGCGGC 5209678 62 100.0 40 CTTTTGCGGC .............................................................. TTTTCTGTTTCGCTAACGCCGCCGCTTTTGCTTTTGCGGC 5209780 62 100.0 CTTTTGCGGC .............................................................. ========== ====== ====== ====== ========== ============================================================== 3 62 40 TGCTGCTGCCTTCGCCTTCGCTTTCGCTTTTTCTTCTTCCGTTACTTCTTCGGTTCCTTCTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,30] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,338] Score: 0/0.18 # # Final direction: R [0,0.74 Confidence: HIGH] >NC_004757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 139594 36 100.0 34 NNNNNNNNNN CA..A.TC.GGCGGT..T......T........... GGTATCCTGCTGTTGAAAAAGATAGGTGGGCGTT 139664 36 100.0 33 NNNNNNNNNN .................................... ATCTATTGGCCGTATGGTTTCGAAGTAAAGATG 139733 36 100.0 34 NNNNNNNNNN .................................... TCTACTGGTTCGAGACATATGAGGAAAAGTATTT 139803 36 100.0 35 NNNNNNNNNN .................................... AAACCAGAATCAAGAAAGAAGACAAAAATTACTAC 139874 36 100.0 35 NNNNNNNNNN .................................... AAACCAGAATCAAGAAAGAAGACAAAAATTACTAC 139945 36 100.0 34 NNNNNNNNNN .................................... CCTTGGCTAACGCGATCAGTTATGGTGATCCTAA 140015 36 100.0 35 NNNNNNNNNN .................................... GATTCCATGCCGAAATCTTTCCCAACGAGACCTAT 140086 36 100.0 35 NNNNNNNNNN .................................... TCGGCGTAGATTCGGAGAATACTGCTCGGGCAGTG 140157 36 100.0 35 NNNNNNNNNN .................................... AGAATATTAATGTCGGCAATGTTCAGGCAAACGGA 140228 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 10 36 34 GTCTCAATCCCTTTGAAATCAGGGCATCGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [161,120] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_004757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 921023 37 100.0 35 TAGTTGTACT ..................................... TGGCAATCCTTGATCCATAACGAGATGACTAGCTT 921095 37 100.0 35 TGACTAGCTT ..................................... ATTGATGTTACAATCCGAGAAAACCGAGGCTCCTA 921167 37 100.0 36 GAGGCTCCTA ..................................... AGTGGCATCAGTAATAGATTTGTCAGGGTCACAGGC 921240 37 100.0 35 GGTCACAGGC ..................................... TCTACCTCTCTTGATCTCCATCAGGAAATTGCCAG 921312 37 100.0 34 AAATTGCCAG ..................................... TTTAAATCGCTAAGAATTACTGACCCTAATCTAA 921383 37 100.0 35 CCTAATCTAA ..................................... ACATCGTAATAGGCTGCATTACTGGCCCGTGTCAA 921455 37 100.0 36 CCCGTGTCAA ..................................... ATGATGTATTCAGGTATCAGCGTCTGTGCCGGTAAT 921528 37 100.0 35 TGCCGGTAAT ..................................... CCGGTAGTCGACCTATTAAAGCCATCATTTAATTA 921600 37 100.0 CATTTAATTA ..................................... AGTTATTCTC ========== ====== ====== ====== ========== ===================================== 9 37 35 GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-17.30,-17.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [182,4] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_004829 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 925156 36 100.0 30 NNNNNNNNNN .................................... ATTTTCTCTTGGAAAATTACCAATTATACC 925222 36 100.0 30 NNNNNNNNNN .................................... CAAGATTTTAAATTCTGTTATAATCACCAC 925288 36 100.0 30 NNNNNNNNNN .................................... TTTTGCAACAGCTGGAATCGTTAGTGTGAT 925354 36 100.0 30 NNNNNNNNNN .................................... TTTAAGTGCGCTAAAACAAACTTTTTGTTA 925420 36 100.0 30 NNNNNNNNNN .................................... TTTAAGTGCGCCAAAACAAACTGTTTGTTA 925486 36 100.0 30 NNNNNNNNNN .................................... ACGAATCAAATTATTATTTGAATACAATCG 925552 36 100.0 30 NNNNNNNNNN .................................... TCGCGCGAAGAATAGTATAACACTTGTTTA 925618 36 100.0 30 NNNNNNNNNN .................................... AATTTAAATATTTGTTTATAATTATTATGT 925684 36 100.0 30 NNNNNNNNNN .................................... TATAGAACCTGTTGCTCTATTTGCTTTTGA 925750 36 100.0 30 NNNNNNNNNN .................................... TATTTTTTAAATGTGTAACCTTCTTTTTCA 925816 36 100.0 30 NNNNNNNNNN .................................... TAAATAATTTACTCGCATTAACTTTAGCTA 925882 36 100.0 30 NNNNNNNNNN .................................... AGAATAAAGGGTTAGATAGTTCTTGTTTTT 925948 36 100.0 30 NNNNNNNNNN .................................... TCCCATACAAAACCCGTCTTTGGACGGGTT 926014 36 100.0 30 NNNNNNNNNN .................................... AAAGCAAATAGAGTAACAGGTTCTATAACC 926080 36 100.0 30 NNNNNNNNNN .................................... AAATTTAAAATTGCCTATTGAATTCGTGAA 926146 36 100.0 30 NNNNNNNNNN .................................... TTTTTGGTTTAAAAAAGAACCACAGGGTAA 926212 36 100.0 30 NNNNNNNNNN .................................... AGTTAACATCAATGTAATAAATTTGACCTA 926278 36 100.0 30 NNNNNNNNNN .................................... ATGTTAACTCGATGTATCCTTACGTAATGA 926344 36 100.0 30 NNNNNNNNNN .................................... CTTTTTGTGCCAATTTACCGTACAAAGAGT 926410 36 100.0 30 NNNNNNNNNN .................................... AAAAACGTCGTCAATTGCGCTAGATCAGCC 926476 36 100.0 31 NNNNNNNNNN .................................... CAAGTCGATATAATTAAGCTATTTGATCCTA 926543 36 100.0 30 NNNNNNNNNN .................................... CGCCTAATAACCCACTACTAAACGCCACCC 926609 36 100.0 30 NNNNNNNNNN .................................... ATTAAAATTTAAATTATAAAATTCGCCAGC 926675 36 100.0 30 NNNNNNNNNN .................................... CTACTTCATTAAATCTACCCTCTGGAATAA 926741 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 926807 36 100.0 30 NNNNNNNNNN .................................... CACACGATTGTCTTAAAGTCAAATCCTTCA 926873 36 100.0 30 NNNNNNNNNN .................................... GTTGAGCTAATTGGACTTAAAGCAAATATT 926939 36 100.0 30 NNNNNNNNNN .................................... TTGTTGTCGTAAAAATAGTTGATTGTATCG 927005 36 100.0 30 NNNNNNNNNN .................................... AGACTGTTTGGTGTAACTATTTATGTCGTA 927071 36 100.0 30 NNNNNNNNNN .................................... CACACGATAGTGTTAAAAACAAACCCATCG 927137 36 100.0 30 NNNNNNNNNN .................................... TTGTTTGATTTATTGGGTCGGTATAAGTTG 927203 36 100.0 30 NNNNNNNNNN .................................... AAATCTGAATGTTTGGTAATCTTCATGGTG 927269 36 100.0 30 NNNNNNNNNN .................................... TCGAAGTAGGCAAAACTTAATATTACGACT 927335 36 100.0 30 NNNNNNNNNN .................................... AATGAAGTAGATATCGTTAACTTCTTTTGT 927401 36 100.0 30 NNNNNNNNNN .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 927467 36 100.0 30 NNNNNNNNNN .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 927533 36 100.0 30 NNNNNNNNNN .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 927599 36 100.0 30 NNNNNNNNNN .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 927665 36 100.0 30 NNNNNNNNNN .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 927731 36 100.0 30 NNNNNNNNNN .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 927797 36 100.0 30 NNNNNNNNNN .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 927863 36 100.0 30 NNNNNNNNNN .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 927929 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 927995 36 100.0 30 NNNNNNNNNN .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 928061 36 100.0 30 NNNNNNNNNN .................................... TTGACAATCTTATGATCTCAACTCACCCGC 928127 36 100.0 30 NNNNNNNNNN .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 928193 36 100.0 30 NNNNNNNNNN .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 928259 36 100.0 30 NNNNNNNNNN .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 928325 36 100.0 30 NNNNNNNNNN .................................... AATCCAACAAACGATACGGATGGTGTTAAT 928391 36 100.0 30 NNNNNNNNNN .................................... TTTGTATAGCTATTTATGTCATAGATATAA 928457 36 100.0 30 NNNNNNNNNN .................................... TTAATCTTAAAATAATAACTGTCTACTTGT 928523 36 100.0 30 NNNNNNNNNN .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 928589 36 100.0 30 NNNNNNNNNN .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 928655 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 928721 36 100.0 30 NNNNNNNNNN .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 928787 36 100.0 30 NNNNNNNNNN .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 928853 36 100.0 30 NNNNNNNNNN .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 928919 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 928985 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 929051 36 100.0 30 NNNNNNNNNN .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 929117 36 100.0 30 NNNNNNNNNN .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 929183 36 100.0 30 NNNNNNNNNN .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 929249 36 100.0 30 NNNNNNNNNN .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 929315 36 100.0 30 NNNNNNNNNN .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 929381 36 100.0 30 NNNNNNNNNN .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 929447 36 100.0 30 NNNNNNNNNN .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 929513 36 100.0 30 NNNNNNNNNN .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 929579 36 100.0 30 NNNNNNNNNN .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 929645 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 929711 36 100.0 30 NNNNNNNNNN .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 929777 36 100.0 30 NNNNNNNNNN .................................... TTGACAATCTTATGATCTCAACTCACCCGC 929843 36 100.0 30 NNNNNNNNNN .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 929909 36 100.0 30 NNNNNNNNNN .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 929975 36 100.0 30 NNNNNNNNNN .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 930041 36 100.0 30 NNNNNNNNNN .................................... AATCCAACAAACGATACGGATGGTGTTAAT 930107 36 100.0 30 NNNNNNNNNN .................................... TTTGTATAGCTATTTATGTCATAGATATAA 930173 36 100.0 30 NNNNNNNNNN .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 930239 36 100.0 30 NNNNNNNNNN .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 930305 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 930371 36 100.0 30 NNNNNNNNNN .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 930437 36 100.0 30 NNNNNNNNNN .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 930503 36 100.0 30 NNNNNNNNNN .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 930569 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 930635 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 930701 36 100.0 30 NNNNNNNNNN .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 930767 36 100.0 30 NNNNNNNNNN .................................... TGACTTTAAATGATATCCGCAACATTGATA 930833 36 100.0 30 NNNNNNNNNN .................................... TTATTATCAAAAATGCCAAGACAACAGTCT 930899 36 100.0 30 NNNNNNNNNN .................................... TATTTGTCAATAAGCCGTCTTGAGTTCGTT 930965 36 100.0 30 NNNNNNNNNN .................................... CAAGACATTTTAATGTTACTAAACGGTCTT 931031 36 100.0 30 NNNNNNNNNN .................................... GTTATGCAGATAAGTTTCACACCGACTACT 931097 36 100.0 30 NNNNNNNNNN .................................... TTAAAGTGCCGATAGTTTGTCAGATGTGTT 931163 36 100.0 30 NNNNNNNNNN .................................... TGTCAAATATATAAACGTGTTTTAAGTTAG 931229 36 100.0 30 NNNNNNNNNN .................................... AAAACCAGCTGATTTAGACGACACAAATAA 931295 36 100.0 30 NNNNNNNNNN .................................... TCTTAATCAATGAACCCGCACCATATTTTA 931361 36 100.0 30 NNNNNNNNNN .................................... TTCATTAAACCAGATTTAATTTATGGTGCA 931427 36 100.0 30 NNNNNNNNNN .................................... CTTTTATCATAATACTTATTGTAAAATTCG 931493 36 100.0 30 NNNNNNNNNN .................................... TTTCTTGATATAAGGATATAATATAATCAT 931559 36 100.0 30 NNNNNNNNNN .................................... AAAAACTTGACAAAATTAAAAATAAAAGTT 931625 36 100.0 30 NNNNNNNNNN .................................... AAAATTCTAATTAACATTCATCCAGGTTCT 931691 36 100.0 30 NNNNNNNNNN .................................... TGTCGCTATACCCAAACCCAAGTTTTTCCA 931757 36 100.0 30 NNNNNNNNNN .................................... TTAACTTTAGTTTTTCTGAATTTAGTCTAT 931823 36 100.0 30 NNNNNNNNNN .................................... TATTACAGATATAAAAGAAATTAAAAAGAT 931889 36 100.0 30 NNNNNNNNNN .................................... TTTAATGTGTATTTAGCGTTATGGTTTTTA 931955 36 100.0 30 NNNNNNNNNN .................................... AAAAATAGGTACAAAAAATTGTTTTAAGTT 932021 36 100.0 29 NNNNNNNNNN .................................... ATAAACTGCAATTTTTTCTCGATGAACCA 932086 36 100.0 1 NNNNNNNNNN .............G...................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 106 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,85] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2142057 28 100.0 32 GTATCTAACA ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 2142117 28 100.0 32 TTTTATATGC ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 2142177 28 100.0 32 GCAAATACGT ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 2142237 28 100.0 32 GAGTTTCTTC ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 2142297 28 100.0 32 CCTCCTCCCG ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 2142357 28 100.0 32 TAGAACCCAC ............................ TGGAATGCGACTTCATCACCATTTTCAATCAT 2142417 28 100.0 32 TTTCAATCAT ............................ TTTACCGAAATCTTTTAGAGCGCTAGTTGTTT 2142477 28 100.0 32 CTAGTTGTTT ............................ AACATTTAAAACATTATTTATTGTTACTGTTC 2142537 28 100.0 32 GTTACTGTTC ............................ ATTTACGTAATGACCAATGACGATGGACATGA 2142597 28 100.0 32 ATGGACATGA ............................ TCGTCGATTTGAACGCGACTCAAGCTGCAATT 2142657 28 100.0 32 AGCTGCAATT ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 2142717 28 100.0 32 TATCCACTTT ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 2142777 28 100.0 32 TTAATCAAGA ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 2142837 28 100.0 32 GTAGTGTCCA ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 2142897 28 100.0 32 TCCCGGCTGA ............................ TCACGTCATTTGTACCAATTTACTGACAACAG 2142957 28 100.0 32 CTGACAACAG ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT 2143017 28 100.0 32 CGGAAGCTCT ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 2143077 28 100.0 32 CACCTATGCA ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 2143137 28 100.0 32 GCGGTAAGCT ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 2143197 28 100.0 32 TATTGCAACT ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 2143257 28 100.0 32 ACACAGATAA ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 2143317 28 100.0 32 TTAACGTCCA ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 2143377 28 96.4 GTTGATTCTG ...........C................ ATTACGCAAGCTGTCACTAATGTTGCGTGCCC ========== ====== ====== ====== ========== ============================ 23 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [131,109] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_005071 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 17489 19 100.0 38 NNNNNNNNNN ................... TGGTGGCGGCGGTGGCGGCGGTGGATATGGCGGCGGCG 17546 19 100.0 38 NNNNNNNNNN ................... CGGCGGCGGTGGATATGGCGGTGGCGGCGGCGGATATG 17603 19 100.0 35 NNNNNNNNNN ................... TGGTGGATATGGCGGTGGTGGATATGGCGGTGGTG 17657 19 100.0 1 NNNNNNNNNN ....T......G..C.T.. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 37 GCGGCGGTGGATATGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [381,168] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1293342 32 100.0 54 NNNNNNNNNN ................................ CTTCTGGTCGCGCAAGCCAAAGCCGTCCACGCGCGTCGCGCCCAACGCGGGCGC 1293428 32 100.0 35 NNNNNNNNNN ................................ TGCTCGTATGCTGACATGTGCGGTCGTAATATTGA 1293495 32 100.0 33 NNNNNNNNNN ................................ GGCTGCTTCCTGGGCGCGCTTGCCGGCGAAGAT 1293560 32 100.0 35 NNNNNNNNNN ................................ TTGTCAACGACGCTAATCGTCATCCCCGGCGAGAG 1293627 32 100.0 34 NNNNNNNNNN ................................ TTATGCTCCGGTGCCGCTGCAAGCTGGCGACCTG 1293693 32 100.0 34 NNNNNNNNNN ................................ TTCAACACCGACCTGGCCGAGGTCTACATCCCGG 1293759 32 100.0 36 NNNNNNNNNN ................................ ATAAGTTGAGGCCGACTATACCAGCGAACTGGCATA 1293827 32 100.0 34 NNNNNNNNNN ................................ GTACCCGTGTTGTCCGAACCACTGCTGCCACCGC 1293893 32 100.0 35 NNNNNNNNNN ................................ TCCCGCCTCTCCGTTGGTGAGCGGAGCCTGCCGGG 1293960 32 100.0 34 NNNNNNNNNN ................................ ACCACCGGCGGCGCTGCGCCGTCGCTGCCGCCGG 1294026 32 100.0 33 NNNNNNNNNN ................................ CCTTCAACGCCGCCGCTTCTGTGTTGCGCCTCT 1294091 32 100.0 35 NNNNNNNNNN ................................ CGATGCATGCGCTATCACGGCGAGCTATATATCCC 1294158 32 100.0 36 NNNNNNNNNN ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 1294226 32 100.0 36 NNNNNNNNNN ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 1294294 32 100.0 35 NNNNNNNNNN ................................ ATCGTCTCACTCCTTGATGCTGCTCGGCACCGTAC 1294361 32 100.0 34 NNNNNNNNNN ................................ TCGACACGCCGGCGTCGGGCTTGGATGCCATGGC 1294427 32 100.0 33 NNNNNNNNNN ................................ TGACGCCCCCAGCTCATCACCGATGCGCAGCAA 1294492 32 100.0 34 NNNNNNNNNN ................................ GGACAGCTTGGTGATGCCCTGGACGCGGTTGCGC 1294558 32 100.0 35 NNNNNNNNNN ............A................... ATGAACGCTACGGCCTGGGCTTCCACCTTGGCCGC 1294625 32 100.0 34 NNNNNNNNNN ................................ ATCGTCGAATTTGTGCCGCGCGCTAAAACCGGTG 1294691 32 100.0 34 NNNNNNNNNN ................................ TGCGTGTACAACATGCAGGACGTAGAAGCGGAGA 1294757 32 100.0 34 NNNNNNNNNN ................................ GCCGCGGCGGCACCGATCACCGCCATCTGGTCGA 1294823 32 100.0 35 NNNNNNNNNN ................................ AACCAGGCTTCCAGATACTGCGCGCCCAAAATGCC 1294890 32 100.0 33 NNNNNNNNNN ................................ CCATCAAGGGCTTTTACTGCTTCAATAGAGGGA 1294955 32 100.0 33 NNNNNNNNNN .........C.......T.............. ATCTGCATGCATAGACCGAGCAATAGTTTTGAG 1295020 32 100.0 33 NNNNNNNNNN ....T..G.C.T.......A............ AGTTGGAGGGAGGGAGCAGTCGCGCCTAGCTGT 1295085 32 100.0 1 NNNNNNNNNN .GTCGCG..C.T.T...........C...... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 27 32 35 GTCGCGCCCAACGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [193,326] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1452780 29 79.3 32 CCGCGTGCTC -----.......C................ GAGGAGTACGAGGCTGCTCGCCGGTCGACGCA 1452841 29 93.1 32 GGTCGACGCA ...C........C................ CCGACCGGATCCCGCGCGGCGTCTGAATCGAG 1452902 29 93.1 32 CTGAATCGAG ...C........C................ TCGCCCATCTCCTCGCGGCGATGCTTCTTGCC 1452963 29 93.1 32 GCTTCTTGCC ...C........C................ CGCCGGCCTCGCAGCCGGCAAACCGCCGAGTC 1453024 29 100.0 32 CCGCCGAGTC ............................. GGTGGGAATCAGCCGGGCGCGATTGTGGGCGT 1453085 29 100.0 32 TTGTGGGCGT ............................. CTTGAGAGCAATCCGTTGACCTGGAAACCGAT 1453146 29 100.0 32 GGAAACCGAT ............................. CTCCATGGCCTGGCCGTAATCGATGGCATTGA 1453207 29 100.0 32 ATGGCATTGA ............................. AAATCCACCACCGCGACCGATAGCGCCACCCG 1453268 29 100.0 32 GCGCCACCCG ............................. TTCACGGTGAGCACGCCCTCGCAGGTAATCAG 1453329 29 100.0 32 AGGTAATCAG ............................. TGATCCGGGCGGAATACAACCACCACGGCCGG 1453390 29 100.0 32 CCACGGCCGG ............................. CTCCAGACTGGTCGTATACACCTGACGGATAT 1453451 29 100.0 32 TGACGGATAT ............................. AGCTCGCTGAGCTGTTCCGCCTCATCCTCGTA 1453512 29 100.0 32 CATCCTCGTA ............................. GCTGGCACGACGCTTGGCGCGATTGTGAAGAA 1453573 29 100.0 32 TTGTGAAGAA ............................. GTCGTTACTGCAACGGAGGCAAAACAGCATCA 1453634 29 96.6 32 AACAGCATCA ............C................ TGCGGCAGACCAAGCCGACCGACAAACCGGTC 1453695 29 96.6 33 CAAACCGGTC ............C................ GCGAGACGATCATCTTGCCGCAACGGCGCGGAA 1453757 29 96.6 32 CGGCGCGGAA ............C................ GCCTCCCACTCAGCAGGGCCCGCCGGCTCGTG 1453818 29 96.6 32 CCGGCTCGTG ............C................ TCGTCGATCTCTATCACACCGGTCGCCGTGGC 1453879 29 96.6 TCGCCGTGGC ............C................ CAATCGCACCAAGGCGTCGGCCGACAACATCA ========== ====== ====== ====== ========== ============================= 19 29 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [393,224] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1461308 29 96.6 32 TGAAATTGGT ...........A................. TCTGGCCTCAGGGCCATCGACATGGCCAAAGC 1461369 29 100.0 32 TGGCCAAAGC ............................. ATGGGATAGTCGCCCAGGAAATCGAACACCAG 1461430 29 100.0 32 CGAACACCAG ............................. ACGTTATTGCCTGGCAGGCCCAGTTCCGCAAA 1461491 29 100.0 32 GTTCCGCAAA ............................. CCTAAAGACCTAGTCGGCCAGCCCTGGCGCTT 1461552 29 100.0 32 CCTGGCGCTT ............................. CCATGTGCGCCGTATCGCATCTTTGTCGCTTC 1461613 29 100.0 32 TTGTCGCTTC ............................. GCTGATCCGAGTTTGCCGCCGCCGCATCAAGT 1461674 29 100.0 32 CGCATCAAGT ............................. CGAGAGGACCGTCCCCGCCGAGGCGTTACCTA 1461735 29 100.0 32 GCGTTACCTA ............................. GGCCGGTTGGAGAGCCTAGGCGTTAGTGTCTT 1461796 29 100.0 33 TTAGTGTCTT ............................. GAACCCGGCCTGCACCATCATCAACGAGACCAG 1461858 29 100.0 32 ACGAGACCAG ............................. ACCGGCCACCACCTGGCCGCCAGCCCGGTTCC 1461919 29 100.0 32 GCCCGGTTCC ............................. GTTACAGATCTTGGTCAGCTGGTGGCAGGCAT 1461980 29 100.0 33 TGGCAGGCAT ............................. CACTGAGGCTGAAAAACCTTGGCCTACTCTGCT 1462042 29 100.0 CTACTCTGCT ............................. GTGGAAGCGT ========== ====== ====== ====== ========== ============================= 13 29 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [181,561] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2126977 28 100.0 32 ATATGTAACA ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 2127037 28 100.0 32 GTAACCTTCT ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 2127097 28 100.0 32 GAAGAATGTA ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 2127157 28 100.0 32 CGTTTAGATA ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 2127217 28 100.0 32 AATGATTGAG ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 2127277 28 100.0 32 ACTATTTAAT ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 2127337 28 92.9 32 GCAAGGAAAG CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 2127397 28 100.0 32 TTTCGTTACC ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 2127457 28 100.0 32 ACCTCAGTTA ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 2127517 28 100.0 32 CTATCCGTAC ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 2127577 28 100.0 32 TGCCGCTCTT ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 2127637 28 100.0 32 CATTAAGTGT ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 2127697 28 100.0 30 GTTGACGATT ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 2127755 28 100.0 32 TCAGCTTTAA ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 2127815 28 100.0 32 ACTGATAGAA ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 2127875 28 100.0 32 AATGGCAAAC ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 2127935 28 100.0 32 TGTGGCAAGT ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 2127995 28 100.0 32 TCCAGGTCAT ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 2128055 28 100.0 32 ATAGCGATCA ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 2128115 28 100.0 32 GTTGTGCCGC ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 2128175 28 100.0 32 ACAATATTTC ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 2128235 28 100.0 32 TTATCTAGAA ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 2128295 28 100.0 32 CGTGGGATGG ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 2128355 28 100.0 32 ACAAAGTGGT ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 2128415 28 96.4 ATTGCATCAG ...........................G CGCGATAACT ========== ====== ====== ====== ========== ============================ 25 28 31 GTGCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [426,42] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2475403 28 100.0 32 ATATGTAACA ............................ TGTAAGAACGATACCAAAGACAAGTATTCCCA 2475463 28 100.0 32 AGTATTCCCA ............................ TTGTTTATTCTTAAGAACAACGTAGTAGCTGG 2475523 28 100.0 32 TAGTAGCTGG ............................ TATTAAAGGGGATCAAAATGAATACATCAACA 2475583 28 100.0 32 TACATCAACA ............................ CTTTTGAAGGGCTAAGTGTTGCCGGGCCGATA 2475643 28 100.0 32 CGGGCCGATA ............................ GCAAGTAAACCCGGTGGCTATAATCTCATCTC 2475703 28 100.0 ATCTCATCTC ............................ TGAGTAAGCT ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [229,843] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1462103 29 100.0 32 TCGTTGCGAT ............................. ACCTATTTCTACATAGACTGTATGTAGCAGAG 1462164 29 100.0 32 TGTAGCAGAG ............................. TACGCGCTGCCGTGGAACAAACAGCGGGAGGG 1462225 29 100.0 32 AGCGGGAGGG ............................. CAGCTGGTTCGATACGGCAATTCGGGCCTGAC 1462286 29 100.0 33 CGGGCCTGAC ............................. TACATCACCATCCACGGCGGCGCGAACGTCGGC 1462348 29 100.0 33 GAACGTCGGC ............................. TAGTAATGGCCATCTGGTGCTCTGGGAACAAGA 1462410 29 100.0 GGGAACAAGA ............................. GGCATGACCGGATTTCGCATCGACAGCCGGCGC ========== ====== ====== ====== ========== ============================= 6 29 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [40.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [976,193] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_005230 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 16310 37 100.0 35 AGGGGGCGGT ..................................... GATTGTTGTGCCCCTGGCGGTCGCTTTCAATGCCT 16382 37 100.0 37 TTCAATGCCT ..................................... TAATCCTAATTAGGTTTGAGTTAGTATCTAGTGCCAT 16456 37 100.0 33 CTAGTGCCAT ..................................... ACAGATTTTGCTTCAGCTAGTACCAAAGGCTAG 16526 37 100.0 37 CAAAGGCTAG ..................................... TCGTAACTACCTTCTAAGTCTGTAGCGATGAATGTGG 16600 37 100.0 37 ATGAATGTGG ..................................... CAAAATATAGGGAAGAATTTTAGAAAGAACCTCAGAA 16674 37 100.0 39 AACCTCAGAA ..................................... AACTAAGGCATCCCATAGCATTCCGCTACGATCTATCAG 16750 37 100.0 35 GATCTATCAG ..................................... TAATAATTGCTGATTAATCGTGGTGGTGGTGGTGG 16822 37 100.0 36 GTGGTGGTGG ..................................... GATATATGGCTAAATATTGCTCAAAAGATTTTAATA 16895 37 100.0 35 GATTTTAATA ..................................... ATTAGATTGGTCGTGTTTTGATTAACGGTGCTAGC 16967 37 100.0 35 CGGTGCTAGC ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17039 37 100.0 35 CATGGAGGTG ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17111 37 100.0 36 CATGGAGGTG ..................................... TTGCGGACAGACTCGATTAAGTCAATAACAGCTTGG 17184 37 100.0 36 AACAGCTTGG ..................................... CTTGCCCTAATTTTCCTGGTGGAAAAGCCGCTGGCT 17257 37 100.0 35 GCCGCTGGCT ..................................... ATAGCAAGTTGCTAGAGAAAGCGCAACAAAACAAG 17329 37 100.0 34 ACAAAACAAG ..................................... GAGGTTAAATTGTTGTCGATTCAAGAAGACTTGA 17400 37 100.0 36 GAAGACTTGA ..................................... AATAGACACGAATTCCGGTTCCAGACCCAGCCCGTT 17473 37 100.0 35 CCAGCCCGTT ..................................... TTCTTCCATCAGTCCAAGTTCTTCAACAATGTCTA 17545 37 100.0 35 ACAATGTCTA ..................................... TGCTGAAGAAGCTGGAGAGAATCGGGCATCGCTAT 17617 37 100.0 35 GCATCGCTAT ..................................... ATTCCAGATGTGGTGGAAGAAACCTACGCCCCCGA 17689 37 100.0 32 ACGCCCCCGA ..................................... AATCAGCTTCCGGCGTTGCCATTTGGATTCAA 17758 37 100.0 34 TTGGATTCAA ..................................... GTGAGGGGGCCAGATCCCTGCCAGATCCCCCAAT 17829 37 100.0 35 ATCCCCCAAT ..................................... ATTAGATCTTTGGCATAAGGCAACCGAAACTGATC 17901 37 100.0 35 GAAACTGATC ..................................... GATTATCGTGCTTCCTTCGATGCTAACTTTGCTCT 17973 37 100.0 35 ACTTTGCTCT ..................................... TCCATAATGATTCTGCCTCGTTTCTACTTGGTTTA 18045 37 100.0 37 ACTTGGTTTA ..................................... TGTATGTCACGCCATCGGACAGGTAGGGAAAGCCTGG 18119 37 100.0 38 GAAAGCCTGG ..................................... CAACTGGCTAAGCTGGTCATAAGGCTTTGGGAATGAAA 18194 37 100.0 34 GGGAATGAAA ..................................... TCGGGTTTCCCTCCTGGGTAATGACGCCTACGGG 18265 37 100.0 34 CGCCTACGGG ..................................... CAAAGCTGGCACGGAAGCCCTTAAGGATATCCTC 18336 37 100.0 37 GGATATCCTC ..................................... GATGCAGAGATTCCACCACCAAAGGAGAATCCGATAA 18410 37 100.0 37 AATCCGATAA ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 18484 37 100.0 41 ACCAGGCTAG ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 18562 37 100.0 37 GGTTAAGCGG ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 18636 37 100.0 41 ACCAGGCTAG ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 18714 37 100.0 35 GGTTAAGCGG ..................................... AAGTAAGGTTCAAACGCCGCTACGCAGTCTGGTCC 18786 37 100.0 33 AGTCTGGTCC ..................................... CAAAGTTGGAACGAAAGCTAACGACAAAAACTA 18856 37 100.0 38 ACAAAAACTA ..................................... TTTAGCCATCGTCGGATTCTAATCGATCCAAAAGTCGG 18931 37 100.0 37 CAAAAGTCGG ..................................... AATCCTACCAAGCGGCTTTTGGTGGGCCTGGCTCCGA 19005 37 100.0 36 CTGGCTCCGA ..................................... TTCGGTTGATTGATGAAGATCTGATCGTCGAGTGGT 19078 37 100.0 34 GTCGAGTGGT ..................................... TCCCTTTTCGGGGATAGGTGGTGTCCCTTTTCGG 19149 37 100.0 35 CCCTTTTCGG ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 19221 37 100.0 35 TCCCGGCAAA ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 19293 37 100.0 36 TCCCGGCAAA ..................................... GGGCAATGTTAAGCATGGCTAGAAGGAATAGTTAAC 19366 37 100.0 33 AATAGTTAAC ..................................... TTCCATTAATGATTCTTCAAAAATCACTCGATT 19436 37 100.0 36 TCACTCGATT ..................................... ACTGTTACTAGCCACCGCCCAACTCCTTTAATACTT 19509 37 100.0 37 TTTAATACTT ..................................... TCTTCTGTTACGTAGATTTTTCCTGTTTCGCCAACAG 19583 37 100.0 37 TCGCCAACAG ..................................... CATCGCTCCCAGCATATTGTCCTGAACGGTCGGCAAT 19657 37 100.0 34 GGTCGGCAAT ..................................... GATTTTTCCAGTGATGGTGCATACCTAGCCGTAG 19728 37 100.0 32 CTAGCCGTAG ..................................... TAGTCCCTCCCACACTGCCAATATTTCTTCAT 19797 37 100.0 31 ATTTCTTCAT ..................................... TCCGTCTGTATGACTTATACTCGCAAGGATT 19865 37 100.0 CGCAAGGATT ..................................... ACGCCGCCAG ========== ====== ====== ====== ========== ===================================== 50 37 35 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-7.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [214,366] Score: 0/0.18 # # Final direction: R [0.5,0.74 Confidence: LOW] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1900978 28 100.0 32 NNNNNNNNNN ............................ ATGCCGAAGTTCACAGCCCCTTGGCATTGGAT 1901038 28 100.0 32 NNNNNNNNNN ............................ CGATTTACAGTAGACCGGTGGACCTGGAGGTG 1901098 28 100.0 33 NNNNNNNNNN ............................ CTCACGCTCCTTGGGCGTCACCCATAATTTCAT 1901159 28 100.0 32 NNNNNNNNNN ............................ GGCCAGAAATGGCCTGTTTCCATTTTGGAGAT 1901219 28 100.0 32 NNNNNNNNNN ............................ GCGCAGCAAACAACGGGACCAATTACGGCGGT 1901279 28 100.0 32 NNNNNNNNNN ............................ GCTGCAGCGCTTGCTGCCGCGCGGCCGAGTGT 1901339 28 100.0 32 NNNNNNNNNN ............................ CTGACGCTTGGATGGCTTACCTGCGACCTGTA 1901399 28 100.0 33 NNNNNNNNNN ............................ GTCATCGACCGTGCATTGCCTGTGATGGTTCCG 1901460 28 100.0 32 NNNNNNNNNN ............................ TGGGGCTTTCGAGTGGGTTTTGCTCTCCAGGT 1901520 28 100.0 32 NNNNNNNNNN ............................ AGATTGATTGTTTTGCTGCCGGTATTGGCATT 1901580 28 100.0 32 NNNNNNNNNN ............................ TCTGGGTTCATGAAATGGCCAGGTTTCAGGTA 1901640 28 100.0 32 NNNNNNNNNN ............................ GTTTTCGAGCGAGAGCGAGCGCGGGCTGACCT 1901700 28 100.0 32 NNNNNNNNNN ............................ TCGGTGTGACGTCTATATGGGTGTCTGGGTGT 1901760 28 100.0 32 NNNNNNNNNN ............................ CCGTAGTAGTTGGGTTTGCCCAGCGCGCTGGA 1901820 28 100.0 32 NNNNNNNNNN ............................ TGCTGTGATCGACACCGAACTCACCTGGGCGA 1901880 28 100.0 32 NNNNNNNNNN ............................ ATTCAACAGCCGCAGCAGGGTTGAATTGCGCA 1901940 28 100.0 32 NNNNNNNNNN ............................ GAGTCAGCATTACGCTCAATGGCGGTTCGGGC 1902000 28 100.0 32 NNNNNNNNNN ............................ TTGAACATCACGTATGCGTGGCGTCTTGGACA 1902060 28 100.0 32 NNNNNNNNNN ............................ GCGAAGGGGCGCGTCACGGCAGGGCGGCAGAT 1902120 28 100.0 32 NNNNNNNNNN ............................ TGAAACCGATGCCGCCTTGAGGATGCGGTGCT 1902180 28 100.0 32 NNNNNNNNNN ............................ GGGTTTGCCAGCTACGGCGATCCGGACGGATG 1902240 28 100.0 32 NNNNNNNNNN ............................ CGATGCCGGACACCGTCGTGACGCCCCCGGTC 1902300 28 100.0 33 NNNNNNNNNN ............................ CCGTCGCGTTGGCGATGCTCTGCACCGATGACT 1902361 28 100.0 32 NNNNNNNNNN ............................ CCGGCCAGCGCGAACACCGCGCCCCAGCAGTA 1902421 28 100.0 33 NNNNNNNNNN ............................ CTCCTACCTGATCCAGGCGACCTACCAAGATCA 1902482 28 100.0 33 NNNNNNNNNN ............................ TTTTGTCCTTTCTATTCGTTGATGTGCCGTGAG 1902543 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 27 28 32 TTTCTAAGCTGCCTATCCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [225,159] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_005230 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 68499 37 100.0 36 NNNNNNNNNN ..................................... TGTAGTAGAACCAATCGGGGTCGTCAATAACTCCCG 68572 37 100.0 40 NNNNNNNNNN ..................................... CGGGGCTTGGGGGGTTGGAGTCCCCGCCCCCGTGGTGGGA 68649 37 100.0 42 NNNNNNNNNN ..................................... TGTGAGTTGCATAATGCCTCCTAATGGCTGTTGGACTCATAA 68728 37 100.0 36 NNNNNNNNNN ..................................... CTTGGTATTTGTAGTTCTCGATGAGTGTTTTAGGCA 68801 37 100.0 36 NNNNNNNNNN ..................................... TGATAACGGGATGCCAGCCCTAAAGGTGATGAGCGG 68874 37 100.0 39 NNNNNNNNNN ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 68950 37 100.0 39 NNNNNNNNNN ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 69026 37 100.0 39 NNNNNNNNNN ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 69102 37 100.0 39 NNNNNNNNNN ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 69178 37 100.0 35 NNNNNNNNNN ..................................... CTATTAAGGCTATTTTCGCCACTTCTGTTTGAAAG 69250 37 100.0 44 NNNNNNNNNN ..................................... GTCACACCTCTTCACGAATCCTCACATCATGAATAAGCTGCACA 69331 37 100.0 39 NNNNNNNNNN ..................................... CGCGGGTCGAGATGTCGCTGGACACGCTGGTGCCGGACA 69407 37 100.0 38 NNNNNNNNNN ..................................... CTGGGCGGACTGGAGTTGCCACCTGCCGATGGCCTGCA 69482 37 100.0 41 NNNNNNNNNN ..................................... GAGCCAAAGTCAACTAGCACAGGCACGGCAAGCCATCCTGA 69560 37 100.0 38 NNNNNNNNNN ..................................... TCGTGCATCTGCGCATAGGAAGAGGTTAATTCCTCAAC 69635 37 100.0 38 NNNNNNNNNN ..................................... AACGGGCAGCCCGAGTGGTGGGCATCGAGGTGGTGCTC 69710 37 100.0 40 NNNNNNNNNN ..................................... CCCCGCCACATTTTCGGATTAGAGGATTTGAATCGGCCGT 69787 37 100.0 42 NNNNNNNNNN ..................................... AGTTTCTCAAACTTTTCGGCGATCGCCGTCCAGGTGAGTTGA 69866 37 100.0 43 NNNNNNNNNN ..................................... TAGCGAAAAGTTATAGTTACCTTTGACCGGAGCTACCAACTCA 69946 37 100.0 35 NNNNNNNNNN ..................................... CCCCGCTGCCACGAGGGCAGCTGTAGACGCACCCC 70018 37 100.0 40 NNNNNNNNNN ..................................... TTAAATATACCCATCCCTAATAAAGGATAGAGATCTTGCA 70095 37 100.0 37 NNNNNNNNNN ..................................... GCTCTATTCTAATAACCCAAGCTTTTTTCAATTCTAA 70169 37 100.0 41 NNNNNNNNNN ..................................... CCGCTTGGTAGGATTGACCACCAAAGCTAGAAACAGGCACA 70247 37 100.0 35 NNNNNNNNNN ..................................... AGGGCGGTTAATCACTAGCGGCGATCTAGATATTG 70319 37 100.0 45 NNNNNNNNNN ..................................... TAGACTTCTATTTCCCCTCTTGCCGAGGGATGATACTGCAATTGA 70401 37 100.0 38 NNNNNNNNNN ..................................... TGCGCTCTCTTATCAAACGCCGCAACGCCATCAAGGCT 70476 37 100.0 39 NNNNNNNNNN ..................................... ACGAGCGGAATCTTCTATGGATCGGATCACATCCTTAAT 70552 37 100.0 37 NNNNNNNNNN ..................................... CTGGTGTCGGGGTTGTAGTATTCGTCTCGGTACAACA 70626 37 100.0 40 NNNNNNNNNN ..................................... ACTATAGGGAGCGTTACCCTAGCTAGACATTGCCTAATCT 70703 37 100.0 40 NNNNNNNNNN ..................................... AAGAAGCAGAATAATGCGATTGAGTGGACAAAAATAAGAA 70780 37 100.0 34 NNNNNNNNNN ..................................... GGTTACGTATCGGCGTAACCGCCACTCCTTAGAG 70851 37 100.0 39 NNNNNNNNNN ..................................... CGCCTCCTGCGCCCTGGAGGGGTGATCCTACACCTCGCG 70927 37 100.0 36 NNNNNNNNNN ..................................... GATTCTGGTATACGTTTATCCCACCACTCCTTAGCT 71000 37 100.0 35 NNNNNNNNNN ..................................... CTCGTAAGCTAGGCAACGGCCTTGCTCGATGCACA 71072 37 100.0 36 NNNNNNNNNN ..................................... GGTGCAGCTGCGCCTAAGGAGATGGCTGTACAAGCT 71145 37 100.0 39 NNNNNNNNNN ..................................... CACCTAGAGGGTACCTCCCGGTTAGACCGGGGCTCTTAT 71221 37 100.0 36 NNNNNNNNNN ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 71294 37 100.0 40 NNNNNNNNNN ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 71371 37 100.0 36 NNNNNNNNNN ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 71444 37 100.0 40 NNNNNNNNNN ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 71521 37 100.0 40 NNNNNNNNNN ..................................... CTAGCCTTTGTGGCTAACCCTCCTGCGCTTTGACATATAG 71598 37 100.0 35 NNNNNNNNNN ..................................... TTTTACCTCTTGCTCCTGCACAAGCTCAGCCTTAA 71670 37 100.0 36 NNNNNNNNNN ..................................... TCCTCCTCGCCTCTGAGAAAGAGTATGAAACACTGT 71743 37 100.0 37 NNNNNNNNNN ..................................... ATGAACAGATTGCCATCTTCTAGGCGGATAGCCTGGG 71817 37 100.0 40 NNNNNNNNNN ..................................... CGCCCATTGTTTGTGCTTCCGGAAGAAGTCTTTCAACTTC 71894 37 100.0 43 NNNNNNNNNN ..................................... GTTATCACGAGTTATCTTGCGCAAATCTTGTAGTGCATCTTTT 71974 37 100.0 37 NNNNNNNNNN ..................................... TTTAGCGGAGGAGACCTCTTCTATTTCTCCTATAACC 72048 37 100.0 41 NNNNNNNNNN ..................................... GGGAGAACCCTAAAAAGTTCTCCTGTCTAATCGCCACCTGT 72126 37 100.0 35 NNNNNNNNNN ..................................... CGCTCCAGAGTGCGCCGCCGCCGAATTGCGGTCCA 72198 37 100.0 45 NNNNNNNNNN ..................................... GAGACTCTATCTTTGGAGTTTCTAAGACATTGGCGGTTTCTAGGG 72280 37 100.0 41 NNNNNNNNNN ..................................... ATTGCTTGGCGTAGGTTGACTTACCCGAGCCTGGGAGACCA 72358 37 100.0 40 NNNNNNNNNN ..................................... TCCAAGGGCTCTTCGTCTTCAAAGGCCTTAGTTACCTCTG 72435 37 100.0 45 NNNNNNNNNN ..................................... ATAATAAAGCACCCTCAACGGACTATGCCATGAACAACAGGACCC 72517 37 100.0 34 NNNNNNNNNN ..................................... GTTGCCAGTTTTGCCGTTTTTGCTGTTCTGAGAT 72588 37 100.0 46 NNNNNNNNNN ..................................... CCCATAATAATTAGGCTCGCTACCATAAGGGGAAACTTCTTCCAAG 72671 37 100.0 34 NNNNNNNNNN ..................................... GCGCCTGAGGTGGTCAATAGTGACCCCATGGCTC 72742 37 100.0 1 NNNNNNNNNN .......................T............. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 57 37 38 GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [524,101] Score: 0.18/0.18 # # Final direction: F [1.46,0.64 Confidence: MEDIUM] >NC_005090 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1386269 36 100.0 30 CGATAAACCC .................................... TCGCCAAAGAAGTTACCAATCTAATTGAGC 1386335 36 100.0 30 CTAATTGAGC .................................... AAGGTTGATCTTGTTTTCATTGCAACAAGG 1386401 36 100.0 30 TGCAACAAGG .................................... GAATACATCGACACGGCTAGCACCATAACA 1386467 36 100.0 30 CACCATAACA .................................... AGCTTGAGGATGGTACATATACCCTCACAA 1386533 36 100.0 30 ACCCTCACAA .................................... AGCTACATAGCCTGCAACTGAGTCGAAATA 1386599 36 100.0 30 AGTCGAAATA .................................... AAAAGAATGGTACAAGAAGTACGCTAACAC 1386665 36 100.0 31 ACGCTAACAC .................................... CCAAGCAATCATGCCTGAGGGAGGAAGTATA 1386732 36 100.0 30 AGGAAGTATA .................................... ATTTCAGGGGCAAGGAAATAGAAGCTGATG 1386798 36 100.0 30 GAAGCTGATG .................................... CATCAGTATGCTCAGAGCAGACGACAAAGA 1386864 36 100.0 ACGACAAAGA .................................... AGTTCTCCTC ========== ====== ====== ====== ========== ==================================== 10 36 30 GTTATAGCCGCCTACTCAGCCATTCCTCGCTATAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [19,70] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_005230 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 90105 36 100.0 36 AATGGGGGCA .................................... CTTTAGGTGGGCGTTGACCTTTAGATTAGGAATGGT 90177 36 100.0 36 TAGGAATGGT .................................... AGCGCCACAGCTGACAGAGTTCCTGAAGGAAGCTAA 90249 36 100.0 35 AGGAAGCTAA .................................... CTGAGTGATTTTTATCAATTGTCGAGCTTAGTAGT 90320 36 100.0 36 GCTTAGTAGT .................................... ACAGGAGTGTTAGCGCACTGCCTGTCATTACTATTA 90392 36 100.0 39 ATTACTATTA .................................... TTAGATTGCGGGGGCTAGTGACGCCATAGTTTAACGACA 90467 36 100.0 36 TTTAACGACA .................................... AAAGATATTAGGCTATCCTTCGGGGTAGTCTTTCTT 90539 36 100.0 35 AGTCTTTCTT .................................... AAGTGTTGTTGCCTAGTGTTATACCAGAATATCCC 90610 36 100.0 37 AGAATATCCC .................................... CTCATTAGTGCTATCTTCTTGTTGATGGATTAGAACA 90683 36 100.0 37 GATTAGAACA .................................... TCTACTCTGGTGAAGACCAAGTGGATTTCGTGGTGAT 90756 36 100.0 36 TCGTGGTGAT .................................... GTTAGTGCTTGGTTGTGGTTATGCTGCAACTAAGCC 90828 36 100.0 37 CAACTAAGCC .................................... ATCGATATACTTTTTAGCATCAGCTAAATGATAAAAA 90901 36 100.0 35 ATGATAAAAA .................................... TTAGAAAGTTTTGGTTAGTTTCCATTCCTCTTTTT 90972 36 100.0 36 TCCTCTTTTT .................................... TTTCTCCATTGTTAGTTAGTCATTTCCTTGACAATT 91044 36 100.0 36 CTTGACAATT .................................... TGGGATTCATGAACATGTTGATGGTGAATTATACCT 91116 36 100.0 41 AATTATACCT .................................... TGATTAAATTAATATGCGTGATAGATTAACTCATTTTGGTT 91193 36 100.0 35 CATTTTGGTT .................................... TTTTTTGGCATAACTCAGTAAGTCTTTTTTGTTTA 91264 36 100.0 39 TTTTTGTTTA .................................... AATACTAATCTTAAAGATCTTGGTTTAATTACATATCGT 91339 36 100.0 37 TACATATCGT .................................... AACAATTGCAAGGTTTATAAGTAAATGAACAACAACG 91412 36 100.0 38 AACAACAACG .................................... AAATCCAACAACTTCTCCACATTTACTCCACTAGTCTC 91486 36 100.0 40 CACTAGTCTC .................................... CTCCTACTTGTGCAGCCTCTAGTCCGCTTTTTAGATTGCG 91562 36 100.0 39 TTAGATTGCG .................................... GCTTCGCTTCTTTCGCTTTCTCAACATAAAACTCATGAT 91637 36 100.0 35 AACTCATGAT .................................... CTAAAGTATGGTAACTCTGGGTAATTTTTTAACAG 91708 36 100.0 37 TTTTTAACAG .................................... CTTATCTTTTTCTAGCGTAACAAAAGAATAATCAGGA 91781 36 100.0 40 ATAATCAGGA .................................... TTTCAACCAAAAGCTTATTGGCTTCTACGGACTCACGAGC 91857 36 100.0 39 ACTCACGAGC .................................... TCTGAACTACTTTTTTTTCAACGACTTCACCATGGGAAG 91932 36 100.0 39 CCATGGGAAG .................................... AGTTTTAGATGCACCAATTACATCTTCTTCCATAAAGGA 92007 36 100.0 46 CCATAAAGGA .................................... ATTCAAGACCTCCGGTGGTCAGAAGACTGTAGCAACAAAGCTTGAG 92089 36 100.0 39 AAAGCTTGAG .................................... TAGATCAGGCATCCAAACTCTTGGGCGATGTCGCGTAAC 92164 36 100.0 36 GTCGCGTAAC .................................... CGATGTAGCTCATAGCGACCTCGATAATTAATTGAT 92236 36 100.0 39 ATTAATTGAT .................................... ACCAAGCTAGTCACTATCCGATCAACCGTCGTTGCAGGT 92311 36 100.0 42 CGTTGCAGGT .................................... TATCAAGAGTTGTCTAGTCAGTTCCAAGAAAAACCCTGGGAG 92389 36 100.0 41 ACCCTGGGAG .................................... TGACCTGATTCCTCGAGAATTGAGACTCCTAAAGAAATTGC 92466 36 100.0 35 AAGAAATTGC .................................... AGTTCCAGTCGTGCTCCAAGGGCTCTTCGTCTTCA 92537 36 100.0 47 TTCGTCTTCA .................................... AACTTTGGAAAATTGCCTTCATACCATTCTTTTGTTAAACCGTTGTT 92620 36 97.2 37 AACCGTTGTT ...........C........................ AGCAACAAAACAGCCAGCAGCAATTAATAAATCAGTT 92693 36 100.0 39 TAAATCAGTT .................................... ACTCCGTGGCGTCGTACCGGTACGCCTGGGCTTCGTCCA 92768 36 100.0 43 GCTTCGTCCA .................................... TGAAATAACCCCCATAGCGGTGGCCATGGGGGCGTTTTACTAA 92847 36 100.0 40 GTTTTACTAA .................................... ATATCTGTTAGCTCAATTTGAGCAAGTTCATCATTTTTTA 92923 36 100.0 TCATTTTTTA .................................... TAGCTACGAT ========== ====== ====== ====== ========== ==================================== 39 36 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [208,308] Score: 0/0.18 # # Final direction: F [1.28,0.27 Confidence: MEDIUM] >NC_005090 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1531926 37 100.0 37 TCAGAGGGGG ..................................... CCGCATACAGGGCAAACCACATCTATCAATACGCTAT 1532000 37 100.0 36 AATACGCTAT ..................................... TCGGTAAGCTCAATTAAGCCCTGTAATAGTTGCTTC 1532073 37 100.0 36 TAGTTGCTTC ..................................... TAAACCTAGAAAACGGAATACTCGCCGCGCCTGAAA 1532146 37 100.0 37 GCGCCTGAAA ..................................... TCGACAATCACGGTGACGATTTCATGAGCACGCAAGA 1532220 37 100.0 38 GCACGCAAGA ..................................... CTCTTCAAATTCTACAAATGAGGCGGGTTCTACTTTCA 1532295 37 100.0 39 TCTACTTTCA ..................................... ATCAACCCAAACTTTTTTAGTATATAAGCGACTCTTCAA 1532371 37 100.0 34 GACTCTTCAA ..................................... GTTTCGCAGAGTAGCATGAGTGCCACCCTGTATT 1532442 37 100.0 37 ACCCTGTATT ..................................... TCTGTGTAAATATCTGCATTAAACCCAAGTCTTGATA 1532516 37 100.0 35 AGTCTTGATA ..................................... TAGATTTATTGTTTTCCTTCTTCACCCCGCCCACG 1532588 37 100.0 36 CCCGCCCACG ..................................... CATAAGAGTGGCGTTCCTCATACTCATATTAGTTTC 1532661 37 100.0 36 TATTAGTTTC ..................................... TTCTTTCTTGCCCCTTAACTGTTTTTGTTGTGGTAG 1532734 37 100.0 35 GTTGTGGTAG ..................................... ACAACATCAATCTGAGCATCGACGCAGAAGAGTTT 1532806 37 100.0 35 AGAAGAGTTT ..................................... GAGCTCACCGAAGCTTTTCAGTCTGCGCTAGCACC 1532878 37 100.0 35 CGCTAGCACC ..................................... CTGATACTCATAGAGCCTACGAGGCACGGGCTGTA 1532950 37 100.0 38 ACGGGCTGTA ..................................... ACTCCGCAAGAGCGAATCTATCGAACTACAATGTGAGG 1533025 37 100.0 36 CAATGTGAGG ..................................... CAAAAGGGCATTTTAGAGATCTACCCGCTGATGAGC 1533098 37 100.0 35 GCTGATGAGC ..................................... CCGCTTGAAACATTGTATCGAACCACTACCGCAGG 1533170 37 100.0 36 CTACCGCAGG ..................................... TTTTTATCTCTTTGTAGTCAAAACAAATATCAGTTT 1533243 37 100.0 36 ATATCAGTTT ..................................... CCTCAATATGGATGCTTGATTTTGCCATCTTTCCCC 1533316 37 100.0 35 ATCTTTCCCC ..................................... TTGGGAACTGCTCCCAACAGGGTTGTTTCCTTCTT 1533388 37 100.0 34 TTTCCTTCTT ..................................... TTTGACCGAGTGAAATTTCGGGTGCTCAATTCGA 1533459 37 100.0 CTCAATTCGA ..................................... TTTGAAATCT ========== ====== ====== ====== ========== ===================================== 22 37 36 GCAACACTTTATAGCAAATCCGCTTAGCCTGTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [213,232] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2395199 28 100.0 32 TATGTAACAA ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 2395259 28 100.0 32 AGCATTAAGT ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395319 28 100.0 32 CTCTTTAAAG ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395379 28 100.0 32 GTGAGGGTTA ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395439 28 100.0 32 CTCTTTAAAG ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395499 28 100.0 32 GTGAGGGTTA ............................ TGATGCCGACGAACGGCAACAATGCCGGTGAT 2395559 28 100.0 TGCCGGTGAT ............................ TTTGAAAACT ========== ====== ====== ====== ========== ============================ 7 28 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [208,833] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_005213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 13719 28 100.0 40 AGCTATTCGC ............................ GTGTCCAATGAATTAGTGTCTATATTATTATTATAGATAA 13787 28 100.0 40 TTATAGATAA ............................ TTCTTTCGAATACGCTCCAAACACCGATTTCAATTCCTCT 13855 28 100.0 40 CAATTCCTCT ............................ ATCAAAATGAGAACGGAAAAATAACTGTTAAATTGAAAGT 13923 28 100.0 38 AATTGAAAGT ............................ TAGCCAGCAGAATAGAAACTGCAGTAAATGATGCCTTC 13989 28 100.0 39 TGATGCCTTC ............................ AGATAAAGTTATTGAAATAGTAGATTATAATAGAAGATG 14056 28 100.0 40 ATAGAAGATG ............................ CTTCTAAAAAAGTCTATTTTTCATTAACTCCGTCCGCACT 14124 28 100.0 40 CGTCCGCACT ............................ ACTATCGTATACTTGATCGAATGTTGATTTGAATGTTTTT 14192 28 100.0 GAATGTTTTT ............................ CTTTCCTTC ========== ====== ====== ====== ========== ============================ 8 28 39 CTTTCAATATTTCTAATATATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [631,654] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_005140 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1694586 35 100.0 34 NNNNNNNNNN ................................... AAAACCACAAGGTTTTCGTAGCCGTTTTGTAGCC 1694655 35 100.0 33 NNNNNNNNNN ................................... ATGCACCTTTTGCATTTAAGATGGTTTCCTGCT 1694723 35 100.0 35 NNNNNNNNNN ................................... ATCAAAGGCTTTACCCTTGATGCATCCTTCAACAT 1694793 35 100.0 35 NNNNNNNNNN ................................... TCTAGTAACCAACGACGCAACATGCTTCGAGCATT 1694863 35 100.0 33 NNNNNNNNNN ................................... TCGTTATGCTGGTTGCTGTTCAGCTCTAATAAT 1694931 35 100.0 35 NNNNNNNNNN ................................... ACCAGCCTCGCAGTAGCGATTCTTTAATCTGGTTG 1695001 35 100.0 37 NNNNNNNNNN ................................... AACTCTTTATCATCCATGTAAACAGCAAATGCAGTTG 1695073 35 100.0 33 NNNNNNNNNN ................................... TATGATCTGTACGATGACCTTGTCCAAAAACAT 1695141 35 100.0 37 NNNNNNNNNN ................................... ACGTTTAGAAAACGAAATCTATTTTTGTTCACCTCAA 1695213 35 100.0 35 NNNNNNNNNN ................................... GCTAAAAACTTTAATCAAATTGGTAAACATTTCCA 1695283 35 100.0 1 NNNNNNNNNN ....................CTG.TTAGCA..AGA NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 11 35 34 GTTTCAGACATGCCCGGTTTAGACGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [240,45] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_005213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 14354 28 100.0 40 TTTAGTATAA ............................ TGTTGTGTGTTGTTGCCTATATAATATATGATGTTGTGCT 14422 28 100.0 40 ATGTTGTGCT ............................ TTCTATATCATATTTATATGCATATAGTCCCAGTTTGAGA 14490 28 100.0 40 CAGTTTGAGA ............................ GGAACATTTTGTTTTCCTTGAGCAAACTAAATACATCGTC 14558 28 100.0 ATACATCGTC ............................ CCACAGGGCT ========== ====== ====== ====== ========== ============================ 4 28 40 CTTTCAATATTTCTAATATATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1266,288] Score: 0.18/0.18 # # Final direction: R [0.18,4.5 Confidence: HIGH] >NC_005213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 488561 28 100.0 47 NNNNNNNNNN ...C...C............C..AT.TT CTAGAAACAGTATTTTTGTGTCTCGTCCAGGAATAACCATGTTTCAT 488636 28 100.0 41 NNNNNNNNNN ............................ ACTACAGTGTAATTTGGTCAGCAGGCGTCGGTTGGCTATAA 488705 28 100.0 38 NNNNNNNNNN ............................ TAGCGACAATATCTTCTTCTCTCGTGTATCTCGGGAAT 488771 28 100.0 40 NNNNNNNNNN ............................ TATAGACCGCCATTGCGTATATGCTTAATTCCTTATCCGC 488839 28 100.0 40 NNNNNNNNNN ............................ GAGAAACAATTAAGCTATTATCAATAACATTCACAGCAAC 488907 28 100.0 46 NNNNNNNNNN ............................ TGGAGGACAACGAAAGGTTTTTAAAGGAACAGGGCGAGAATGTGGA 488981 28 100.0 39 NNNNNNNNNN ............................ GTGGTTGGGAGGGAGCCGAAGGGTCCGAAGGGTTCGAAT 489048 28 100.0 40 NNNNNNNNNN ............................ ATGTTGTGTTCTATTGCCACGGATGTATCTGCTATTATGT 489116 28 100.0 40 NNNNNNNNNN ............................ TTGATAAATTCTTTGAAGTTATATGTAATTATCACTCTAT 489184 28 100.0 40 NNNNNNNNNN ............................ ATTTTCAAAGACTCTAAAAATCTGGGGGAAATGAAATTGG 489252 28 100.0 66 NNNNNNNNNN ............................ TATATGAATTGTCTAGGTACTTTTGTGTCTCATCCAAAAATAACCATGTTTCGTTCGAATTTCTGT 489346 28 100.0 41 NNNNNNNNNN ............................ CACATTTATGTATATTATATAATACTTTAAAAGTCTAACAG 489415 28 100.0 42 NNNNNNNNNN ............................ GATCACATACAGGAATTGCTGAAGAAATTGTTACAGGAAAAG 489485 28 100.0 41 NNNNNNNNNN ............................ ATGATAAGATGTTTGCTCAAAAAGCCAAATGCTTTTACACA 489554 28 100.0 36 NNNNNNNNNN ............................ CATCATATTTAAAGAGTTTGAGAACACGATACATTT 489618 28 100.0 43 NNNNNNNNNN ............................ GTGGGTCAATTTAAAGGATATTTCACAAATGTAGAGTTAGAAA 489689 28 100.0 40 NNNNNNNNNN ............................ ATCCTATCAATTCTGGAATCTGATGCTGGATCAAATATAA 489757 28 100.0 40 NNNNNNNNNN ............................ TTCAGGACAAGAACAATGTAAAATAACTCAATTTAACATA 489825 28 100.0 39 NNNNNNNNNN ............................ TCATTCTTAGATAAACAAGATATAGTATTTAGAAAGATG 489892 28 100.0 40 NNNNNNNNNN ............................ ATGGCGGAACATTACAATTGAAGATAGATAATAAGAGTAA 489960 28 100.0 40 NNNNNNNNNN ............................ ATCATTTCTTGTTGTCTCTGAAGCCAAAGAATCTGTAGAG 490028 28 100.0 40 NNNNNNNNNN ............................ CAGTCTTAACTATAATGCATGTTATTTGCCTAACTGATAA 490096 28 100.0 39 NNNNNNNNNN ............................ ATTGCAGTTTATACTGAAGATCCTTCTTAATTCTAGTTA 490163 28 100.0 42 NNNNNNNNNN ............................ ACAGCTAAACATTTATAAATAATTATATTATTATTATCCATA 490233 28 100.0 40 NNNNNNNNNN ............................ TTACATTATCCCTAATTACTATTCTTACTATCGAATTGTA 490301 28 100.0 40 NNNNNNNNNN ............................ TGTTACAAATGTGTATACTACCAATATCAATGCAAATCAA 490369 28 100.0 40 NNNNNNNNNN ............................ TGTTAATGATTATATGCTGAGTTGTTAATAATGTTGTCCT 490437 28 100.0 45 NNNNNNNNNN ............................ TTAATCCCGTTCAAAGTAGCACTTGAATCCAATAGTGAACTCTTT 490510 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 29 28 41 CTTTCAATATTTCTAATATATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1600,347] Score: 0.18/0.18 # # Final direction: R [0.45,4.91 Confidence: HIGH] >NC_005244 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 2229 19 100.0 19 NNNNNNNNNN ................... TCATATTCTCAAGTTATAA 2267 19 100.0 19 NNNNNNNNNN ................... CATTTTCTGAATTCGCTGA 2305 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 19 GTGGTGCTCCGAGCACCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [22,42] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_005810 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1223356 28 100.0 32 NNNNNNNNNN .C.A........................ TCTGTACGCATACCGCCATCTTGCATCAGTCT 1223416 28 100.0 33 NNNNNNNNNN ............................ AGCAAAAATCTTAATTACATCTGATGATTTCGG 1223477 28 100.0 32 NNNNNNNNNN ............................ TTTACGGCACGGCGAAAGATTCGGTTCTTGTC 1223537 28 100.0 33 NNNNNNNNNN ............................ TTCTGGATAGGACAAATAGGATGATTGTATCAG 1223598 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [5,356] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_005835 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1136637 36 100.0 37 NNNNNNNNNN ..AT................................ CGAGGAGGACGTGGCGGAGCTGGTGGAGCTTCTTGGG 1136710 36 100.0 39 NNNNNNNNNN .................................... TGTGGGGTTTGAGGACACTCCCTATGGTCGTGTTCGCGT 1136785 36 100.0 37 NNNNNNNNNN .................................... TGAACCTCTTCCGCGTCCTGCAGGACAGGGAGAGGTT 1136858 36 100.0 47 NNNNNNNNNN .................................... AAGTGGCTGGAAGCGCTGAAACTCAGGGAGCTCGTAGAGGCAGTCCA 1136941 36 100.0 35 NNNNNNNNNN .................................... TAAGCGACAGCCGCGTACTGGCCGCCTTCATCGGC 1137012 36 100.0 35 NNNNNNNNNN .................................... GGAAGTGGACGGGTTGACTCGCACCGTCATCCTTG 1137083 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 38 GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [13,365] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_005823 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1133848 37 100.0 33 NNNNNNNNNN T.CTAA.C......T...................... AGTTTTTCACGGGGTGACGAATGTTTTCCCCTT 1133918 37 100.0 38 NNNNNNNNNN ....................................C CCATAACGATACATTATGGGAAGTTTGGTCCTATGTCC 1133993 37 100.0 36 NNNNNNNNNN ..................................... AATCAAGGACGAATTCTTTTGATCAAAGGATCCTTT 1134066 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 35 GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [462,37] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 100454 36 100.0 41 NNNNNNNNNN .................................... TGGGGTATATCCTCTTTATCCCCGGTATTCTTGACAGGTCT 100531 36 100.0 37 NNNNNNNNNN .................................... TTCACAAAATCGTACTTGAGGCAAGCGAAAGCGACGA 100604 36 100.0 38 NNNNNNNNNN .................................... CCCTGAGGGGGAGGAGGAGGTGGCTTGCGGGTAAAAAA 100678 36 100.0 42 NNNNNNNNNN .................................... TTCGAAGCGCCCCGCCCCGAGGCACTTCCCACACCCTTTCCC 100756 36 100.0 44 NNNNNNNNNN .................................... GTGCTCCTTCAAACTCCTCTCCAGAGCCTCCTGGATCAGTTCAT 100836 36 100.0 41 NNNNNNNNNN .................................... TCCTCTATCGCCTTGGCGATGACGCCCCTGATGGCCTCGCG 100913 36 100.0 40 NNNNNNNNNN .................................... ACTCCCTCTACGCCCCCTAACTCGCGGTACGCGAAGAGGG 100989 36 100.0 36 NNNNNNNNNN ........A........................... GACAGGTAAGGGTGTAGAGGTCGTCCAGCTTCATAA 101061 36 100.0 37 NNNNNNNNNN ........A........................... AAGTGAGGATGTACCCCCGCCCCTTGAGCTTCTTCTC 101134 36 100.0 37 NNNNNNNNNN .................................... CTTTGCGCCGCGCGGCCTAGCGCCGACCGCGTATCCC 101207 36 100.0 37 NNNNNNNNNN .................................... CTTTAAGGGAGTCGCCTTCGCCCACGTCTTCCTTGGT 101280 36 100.0 38 NNNNNNNNNN .................................... GCGAGGAGCCGCCGCACCCCGATGATGCGCCCCTGGTC 101354 36 100.0 40 NNNNNNNNNN .................................... TCCTTCTTTGGGCCAGCTGATGCCCCAGGCAAGCCCCGGT 101430 36 100.0 41 NNNNNNNNNN .................................... GCTTCTCCGTTGCGCTGAGTTCGCCGTTGCTCCAGACATGG 101507 36 100.0 42 NNNNNNNNNN .................................... GTGTGGCCGCGGCTGCGCGCCGCGCGGCCCTTGCGCCCATGC 101585 36 100.0 1 NNNNNNNNNN ..............................G..CT. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [144,38] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 131658 37 97.3 38 GGCGTTGGGG .................................T... CTGGCCGCCTGGCTCTTAATGAGCTGGAGCACCTGGTG 131733 37 100.0 34 GCACCTGGTG ..................................... GCGCTCTCCGCCTGTAGGTCCAGGCCGAGGACCT 131804 37 100.0 38 CCGAGGACCT ..................................... ACCCAGTTGCCCCTAACCACCCAATAGAACCACCCATA 131879 37 100.0 37 ACCACCCATA ..................................... CCGGGGCGCGCCGGACGATCTCCCGCAGGCCCTCCAC 131953 37 100.0 37 GGCCCTCCAC ..................................... CCCCCCCTAGTGGGTCCTCCACCAGGGCCCCGCCGCA 132027 37 100.0 38 CCCCGCCGCA ..................................... AGGCGGAGCTCGGCGAGGATCTCCTCGTGGTGGCGGCG 132102 37 100.0 37 GGTGGCGGCG ..................................... CCTCTAAGACGGCCTTCTCACCTATGACCTCCTCCGG 132176 37 100.0 CCTCCTCCGG ..................................... TCCCCCCTATA ========== ====== ====== ====== ========== ===================================== 8 37 37 GTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-17.10,-18.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [94,27] Score: 0.18/0.18 # # Final direction: R [0.18,5.92 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 153106 36 100.0 42 GGGGGGTACC .................................... GGCCCCTGACGAGGTTCCTAGGTGAGGTCGGTCTCCTTCTGG 153184 36 100.0 37 CTCCTTCTGG .................................... CCCCCGTGTGGGAGGTGGACCTGGGGGGCCTCGAGAT 153257 36 100.0 40 GCCTCGAGAT .................................... GCTCCGGGTGGGCCCCGTCCTCCTCGGGCCCGAGAGGAGA 153333 36 100.0 37 CGAGAGGAGA .................................... TGATGCTGATCATTGCTCACCTCCTGCCCGGAGGTGG 153406 36 97.2 42 CCGGAGGTGG ...............G.................... AAATGCGGTCCTGGAGTGGGAATACAACGAAGTTTCCGTTCA 153484 36 97.2 TTTCCGTTCA ...............G.................... ACGGTACCGGCGAAGGACTTGGCCACACCTTGAATGACCGTCAT ========== ====== ====== ====== ========== ==================================== 6 36 39 GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [660,93] Score: 0.18/0.18 # # Final direction: F [0.92,0.27 Confidence: MEDIUM] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 138645 36 100.0 35 ATAGGGGGGA .................................... CCCCGCGCACCCCTCCACGGGGCATAGCAGGTCAT 138716 36 97.2 43 AGCAGGTCAT ......T............................. CGGGGCGGGCCGCCATATCTGTACCCGCTCTAGAGCAACTGGA 138795 36 97.2 36 AGCAACTGGA ......T............................. CCGGGAGGAGGCGCTGGAGGTGCGGAGCTACGAGGC 138867 36 100.0 39 GCTACGAGGC .................................... CCCCTCAGGGTCCGTTACTTCCACAAAAGTTTTAAAGTG 138942 36 100.0 40 TTTTAAAGTG .................................... CGCACAGCTTTCGGACGGTGGCTGGCGAAACCCCCAACTC 139018 36 100.0 40 CCCCCAACTC .................................... TATGCCCAAGAGGTTGAGCACGCTGCACCTCCTTGCCGAT 139094 36 97.2 34 CCTTGCCGAT ............T....................... CCCGCCCGGTCCCTGGAGCACCAGCCTGTCCCAC 139164 36 100.0 CCTGTCCCAC .................................... CAAACTTGCC ========== ====== ====== ====== ========== ==================================== 8 36 38 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-18.00,-17.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [111,57] Score: 0/0.18 # # Final direction: F [5.65,0.27 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 191888 36 100.0 36 TTGGGCTGCA .................................... ACCGCCACCGCCAAGATCCAAGCGCCCTGCATCCCT 191960 36 100.0 36 CTGCATCCCT .................................... GATGGCGAGGACGGCCACGTTGAGGTCCCGGGCCAG 192032 36 100.0 36 CCCGGGCCAG .................................... GAGGGAGGCTGGTAGGACTCCATGCCGGGGTAGCGG 192104 36 100.0 37 GGGGTAGCGG .................................... TCTCCCTGGGCCGGATGCGGTGCCCCCTCCGGTCCCC 192177 36 100.0 37 TCCGGTCCCC .................................... CCTATCTCGTCTTCCGCCTCTGGAACTTCTCCGACAC 192250 36 100.0 37 TCTCCGACAC .................................... TCAGTATACCACAGCTCTGCGGCGGGTGCTGGAGAAG 192323 36 100.0 GCTGGAGAAG .................................... GGCCCCCTCCA ========== ====== ====== ====== ========== ==================================== 7 36 36 GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [25,241] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 203222 36 100.0 36 NNNNNNNNNN .................................... TCCGGCTCGTGAACGGCGAGATTCAGATCATTCCCG 203294 36 100.0 35 NNNNNNNNNN .................................... CATCACCTCGGCCCGGGCCAGGACCACCCCCACCC 203365 36 100.0 38 NNNNNNNNNN .................................... CCGCCTGGCTCGCCGGCCCCATCGCCCGCCTCTGGCAG 203439 36 100.0 36 NNNNNNNNNN .................................... CGCTATGGACCGAAACGACTGCCCACTCGCGAGCGC 203511 36 100.0 37 NNNNNNNNNN .................................... AACACAGCGTAGACCGTAACGGCCCCCAGCGCGATGC 203584 36 100.0 37 NNNNNNNNNN .................................... CCGAACCGCCGCCTCAGCGCGGTGAGGACCTCGCCCA 203657 36 100.0 34 NNNNNNNNNN .................................... GTGCGGCTCGTGACCAAGTAGCCATGGGGTACTT 203727 36 100.0 36 NNNNNNNNNN .................................... TTCGGAACCCGCCTGGAGTACGCCCCATATCAGCAG 203799 36 100.0 35 NNNNNNNNNN .................................... CGCTGGGCGGGGATCGCGGCGAGCGTGGTCCTCCC 203870 36 100.0 37 NNNNNNNNNN .................................... TGTACGCCCTGCGAAACTTTGTGCTCCAAAGCGTGGT 203943 36 100.0 38 NNNNNNNNNN .................................... AGGGCCTCGAGGCCCTTCACCAGGAGGCCGAGGCGGCG 204017 36 100.0 35 NNNNNNNNNN .................................... CTGAGGGAGCTGGTAAACGAGCTTGGGAACGCCTG 204088 36 100.0 36 NNNNNNNNNN .................................... ATTCGCCGCCTCCCAGTAGCCGCGCCACCACCTCAG 204160 36 100.0 1 NNNNNNNNNN ............T....................T.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 14 36 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [240,13] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 212720 36 100.0 41 TTGCCTACAA .................................... AAGGCAGGGGAGTTCGGCAAGAAGCTTGAGCAGTACTTCAA 212797 36 100.0 41 AGTACTTCAA .................................... AGAAGCCCTCTACACGGGCGAAGAAGCCCTCTACACGTACG 212874 36 100.0 45 TACACGTACG .................................... ATTTGAAAGAGGCGAAACCAGGGCCCTCCTCCCTGGGTCGCAATC 212955 36 100.0 37 GGTCGCAATC .................................... CCCTAGTGGAGGTGAGCCTTGAGGCGTAAGCTGAAGT 213028 36 100.0 42 AAGCTGAAGT .................................... CGAGGGCGATCCTCGCACTCAGGCCAGAAGGCAGTCCAGAAA 213106 36 100.0 40 AGTCCAGAAA .................................... GTAAGGTGTTAAGAAGCGTGTTTTTCGGACTTGGGGCGGC 213182 36 100.0 41 TTGGGGCGGC .................................... GGAGGCCTTGTCGGACCCCGAGGCCGCCCCTCTCGCCCGGG 213259 36 100.0 40 CTCGCCCGGG .................................... TAAGCCCCAAGGAAGGGAGTTTGCGTGGATCCTGAAAGAG 213335 36 100.0 CCTGAAAGAG .................................... GGTACCCCCC ========== ====== ====== ====== ========== ==================================== 9 36 40 GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [88,365] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 92158 36 100.0 38 CTTCACTGCT .................................... CGCGATGACGATGCAGGGCGCCGAGTGAAACGTTAAAG 92232 36 100.0 41 AACGTTAAAG .................................... ATCACCTTCTTAGGTGTCGGGTTCCTTTTTGCCGTTCTAAC 92309 36 100.0 44 CCGTTCTAAC .................................... ACCAAGATGTAGTCATCCCCAAAGTCCTTGACGAGCTTAGTCAT 92389 36 97.2 GCTTAGTCAT ..................................C. TCGCGGGG ========== ====== ====== ====== ========== ==================================== 4 36 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [55,31] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_005863 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 175898 32 100.0 33 ATGGCCGACA ................................ CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT 175963 32 100.0 35 GGGCGTCGAT ................................ GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA 176030 32 100.0 36 CACTCATCAA ................................ CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC 176098 32 100.0 33 CAGGCATCGC ................................ TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA 176163 32 100.0 34 ATCGTGGCGA ................................ ATCACACACCTCGCTTGCTCTACGTTCCTGCATC 176229 32 100.0 32 TTCCTGCATC ................................ CAGTTGGAGGAAGACCATCAACAGTTCCATAG 176293 32 100.0 34 AGTTCCATAG ................................ ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG 176359 32 100.0 35 AGTGCATTTG ................................ TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG 176426 32 100.0 35 GCCTGCGCCG ................................ CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG 176493 32 100.0 35 CGCTGGACGG ................................ TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG 176560 32 100.0 35 ACAAGTGGCG ................................ GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG 176627 32 100.0 33 CCATCACGGG ................................ GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG 176692 32 100.0 33 GCCGAACTTG ................................ CGAAGAATTACGCGCAGTACGAAATTGACGAGC 176757 32 100.0 36 ATTGACGAGC ................................ ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC 176825 32 100.0 33 GCAGCGGCAC ................................ AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG 176890 32 100.0 34 CACGCGCAAG ................................ ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT 176956 32 100.0 33 AGCTCGTAGT ................................ AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG 177021 32 100.0 33 GTACTCCGCG ................................ TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT 177086 32 100.0 33 GTTCAGGGAT ................................ GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA 177151 32 100.0 34 TGGCTCGTGA ................................ ATCCAGATACCGCAGGATGATGACAACTACCTGT 177217 32 100.0 33 AACTACCTGT ................................ AACATCGGAACGGATGTTGACCGTGTTGGTGGA 177282 32 96.9 34 TGTTGGTGGA ..........G..................... GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC 177348 32 100.0 34 ATCCTGTTGC ................................ TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG 177414 32 100.0 35 GAATCGGCAG ................................ CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA 177481 32 100.0 35 GCAGCCTGAA ................................ ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC 177548 32 96.9 33 AACGCTGCGC ..........G..................... GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG 177613 32 100.0 35 CGGCATCGAG ................................ AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT 177680 32 93.8 CCTTGGCTAT ........T.G..................... AGCTCTCCCTCTTTGACGACAGCGCGGCACGCC ========== ====== ====== ====== ========== ================================ 28 32 34 GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.20,-11.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,118] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_005871 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 39353 29 100.0 33 NNNNNNNNNN ....A..T..................... TTGTGGGATATTTAACGGAAGCTAAAGTGGATG 39415 29 100.0 32 NNNNNNNNNN ............................. TTAATGAATCTAAGTGAAGCCGTTAACGTTAT 39476 29 100.0 32 NNNNNNNNNN ............................. TTAATGGGTGCAGTGGGTACGGGTGACAACTT 39537 29 100.0 32 NNNNNNNNNN ............................. AGCAACAACAGGCTTTCGGTTCGAACCTCAAC 39598 29 100.0 32 NNNNNNNNNN ............................. CGATACGTTAGAGTTCATCGCTAGAATGAACC 39659 29 100.0 32 NNNNNNNNNN ............................. ACAAAAAGCTATCTGGTGCTGTAGTTCTATAT 39720 29 100.0 32 NNNNNNNNNN ............................. AGGTTCAAGGGACAACGGCCCAACTGTTACAA 39781 29 100.0 32 NNNNNNNNNN ............................. TTCGAGGGCGCACATTCAATTAAACGGGTGTG 39842 29 100.0 33 NNNNNNNNNN ............................. TTTCCCATCCTCGCGCTTTCTATTTTTGGAACA 39904 29 100.0 32 NNNNNNNNNN ............................. ATCAGTGATCTTAATGCTACAGCTTGATTCAA 39965 29 100.0 32 NNNNNNNNNN ............................. ACGTTGTGCCATTTATCTCGCTAATCTCACCG 40026 29 100.0 33 NNNNNNNNNN ............................. GTAGCAAGCTGAGTCAGTAAGATAGATACCATC 40088 29 100.0 32 NNNNNNNNNN ............................. GTTGATGAAACAAACCGACCTGATTCAACCGA 40149 29 100.0 32 NNNNNNNNNN ............................. TACACCAAAAGCCCCATCAGGCACGCCGGAAG 40210 29 100.0 32 NNNNNNNNNN ............................. ACCTTACCGATCACTTTAATGATGACCGCATT 40271 29 100.0 32 NNNNNNNNNN ............................. TACATACGTTGGGTTGTGAACATGTGATTCTC 40332 29 100.0 32 NNNNNNNNNN ............................. ATATTTATCCGAAACTTACCCTTTCCTATATC 40393 29 100.0 32 NNNNNNNNNN ............................. TATCAGGGTATTGCTCTTTGAACTCGTCAATG 40454 29 100.0 32 NNNNNNNNNN ............................. ATGGCTATGAAAACTCAAATAGCAATATGTTA 40515 29 100.0 32 NNNNNNNNNN ............................. TCCATACAGAACGCCGTGGAAAACCGTGTGCG 40576 29 100.0 32 NNNNNNNNNN ............................. AAAGAAGGTAGTTCTGAAATTGCGGATACCAC 40637 29 100.0 32 NNNNNNNNNN ............................. TTGTTCAACTCGTCGATGATGTCCGGCATGTC 40698 29 100.0 32 NNNNNNNNNN ............................. TCTTCATCAGTACCGTTCGGAATATTCCCGTA 40759 29 100.0 32 NNNNNNNNNN ............................. GCTAGGCCTAGAACGCTTCGGATACCTGTTAA 40820 29 100.0 32 NNNNNNNNNN ............................. TTTCTCGTGGTCAACTCTTACATGGAACATTG 40881 29 100.0 32 NNNNNNNNNN ............................. CTCTACCTGAGTTTCCTTTTTATTCTCAGCAT 40942 29 100.0 32 NNNNNNNNNN ............................. CTGGCATCGATAAGCGTGACCGCGATGCGGAA 41003 29 100.0 32 NNNNNNNNNN ............................. CGTTGACAGTCTAGCGTTCATCTCATTCATTA 41064 29 100.0 32 NNNNNNNNNN ............................. GCCGTCCATGCAGTAACCGTCCTGAGAGAACG 41125 29 100.0 32 NNNNNNNNNN ............................. GATTTACTAGTTACGCTAATTCTAATTAGTGG 41186 29 100.0 32 NNNNNNNNNN ............................. ATTTGAACGTTACCTGGTGGTGTTTTCTCGCC 41247 29 100.0 32 NNNNNNNNNN ............................. TCAGGTAGTGCATTCAAGGTAAATGATGGTGA 41308 29 100.0 32 NNNNNNNNNN ............................. ACCGCCTGAAAGCCACGAAGGTTACAAGGTAA 41369 29 100.0 32 NNNNNNNNNN ............................. AAAAAGAGGTATAAAGTCAAACCCCTCACCCT 41430 29 100.0 32 NNNNNNNNNN ............................. ATGCTTGGGTGATCTCAACATGATTTTGCCGT 41491 29 100.0 32 NNNNNNNNNN ............................. TGTATCTCCCAATTGGGCACTAACCTTCGAGT 41552 29 100.0 32 NNNNNNNNNN ............................. TTTAACAGCGTGTCCCATTGGTATTTCATAAC 41613 29 100.0 32 NNNNNNNNNN ............................. ATTCAGCCTCATTTTTGTCATTGTCCTAGCTC 41674 29 100.0 32 NNNNNNNNNN ............................. GCGATAAATGCCAGCATCCATTTTTTTGCATG 41735 29 100.0 32 NNNNNNNNNN ............................. ATCTCATTATCTGGCCACAGAAAACCAAGATG 41796 29 100.0 32 NNNNNNNNNN ............................. ACTTTCATAACATCAAATAACTGGAGTAAGAC 41857 29 100.0 32 NNNNNNNNNN ............................. CACACAATTGCAGTCTTCACAGAATGGCTTTA 41918 29 100.0 32 NNNNNNNNNN ............................. TGTATCGAAATGATGCACAACCAGTACGTCAC 41979 29 100.0 32 NNNNNNNNNN ............................. CATTGCATGTGCGTAATCGTCAACTTTGATTG 42040 29 100.0 32 NNNNNNNNNN ............................. GCAGCAATGAGTTTTATTGGTGAGTCGAGAGA 42101 29 100.0 32 NNNNNNNNNN ............................. CGGGAACAGTTACGCCCCGCGTTGGCTGATTA 42162 29 100.0 32 NNNNNNNNNN ............................. ACGAACAGAAACCTGATAGTAGGCATAGTCAA 42223 29 100.0 32 NNNNNNNNNN ............................. GCGTAAAACGCCCTTTGATTGTTGTTTGGTTA 42284 29 100.0 32 NNNNNNNNNN ............................. GGTCGTATGCCTATGGCTTCGGTTGGTATGGA 42345 29 100.0 32 NNNNNNNNNN ............................. CATCAACGATTATCGAAGATGGCGTTATCAAG 42406 29 100.0 32 NNNNNNNNNN ............................. ATTCAAAGTTGATTCAGTGGAAGAACTTGTAA 42467 29 100.0 32 NNNNNNNNNN ............................. CTCACCCAGTGTCACATTACATTTTTTGTATG 42528 29 100.0 32 NNNNNNNNNN ............................. CTACAAGCCCGTATGTTAGCCGGTGGGGGTGC 42589 29 100.0 32 NNNNNNNNNN ............................. GTGATGGCAAAACGTTGGGGTACCGCTCCTGG 42650 29 100.0 32 NNNNNNNNNN ............................. TTCGTCGTACCGTTGGCTCGCATGGTGCAGCT 42711 29 100.0 32 NNNNNNNNNN ............................. GTAAACGATTGCTGGCTTACTGGGCTGCTAAA 42772 29 100.0 32 NNNNNNNNNN ............................. GTGGCCATGTTGCTGCCCGTTACTACAAAGAA 42833 29 100.0 32 NNNNNNNNNN ............................. ATTCCTACTCGCATTTGCTAAGCGATTGCTAG 42894 29 100.0 32 NNNNNNNNNN ............................. ATGTGACATGCCTTGAAGGTGATGTTAATTGG 42955 29 100.0 32 NNNNNNNNNN ............................. ATGAAGAGCGACAACAGCGGCTTTTGCTTTTT 43016 29 100.0 32 NNNNNNNNNN ............................. ATCGCGACAAGAGCAGCGGCGATTACTGATCA 43077 29 100.0 32 NNNNNNNNNN ............................. TTCTTTCATTGCTGCCTGCTCAGCCTGCTCAG 43138 29 100.0 32 NNNNNNNNNN ............................. TGTAACACAGATGTTCCACTTGTCGCCCTAGC 43199 29 100.0 32 NNNNNNNNNN ............................. AGATTGAAAAACAATACCATCAGATCCTATTA 43260 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 65 29 32 CGGTTCAGCCCCGTGAGTACGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [286,79] Score: 0.18/0.18 # # Final direction: F [0.92,0.68 Confidence: LOW] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 14 31 100.0 35 AATTCGGATA ............................... CTGGATTTCCTTGGCCATATTTGCCGAGATACTAT 80 31 100.0 35 GAGATACTAT ............................... ATATATCGGATTTCAAACCCTTATAGATAGACTAG 146 31 100.0 35 GATAGACTAG ............................... GCCAGAGGCATTTCTCCGTGCGTGGTCCTTTAATG 212 31 100.0 36 TCCTTTAATG ............................... ACAACAGGCAAAAACAGAATTAAGACTGGCCATTGA 279 31 96.8 TGGCCATTGA G.............................. CCGTTTCTAAT ========== ====== ====== ====== ========== =============================== 5 31 35 ACTTTCAATCCTATTTAGGTTATTATTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [15,216] Score: 0.18/0.18 # # Final direction: R [0.41,5.32 Confidence: HIGH] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1540318 30 100.0 35 NNNNNNNNNN ....................G......... TCCGCCGAATTTCAAACACTTATAGATGGACTAGA 1540383 30 100.0 36 NNNNNNNNNN T............................. TATCTCTCTTTTCATTCCTTATCGATTTATCGATCC 1540449 30 100.0 36 NNNNNNNNNN .............................. CACGGTGGTGATGCAACGATAAGATCAACATTATCA 1540515 30 100.0 37 NNNNNNNNNN .............................. TCCATCTAAAGACATTCTCTCTAAATATATCAAAGCC 1540582 30 100.0 35 NNNNNNNNNN .............................. TTTTTCCGCATAGAAAAGCCATTCTTTTCTCTGTA 1540647 30 100.0 39 NNNNNNNNNN .............................. CAGATGCGACAAAAATTTAACATCACTCGTGCTTTATCT 1540716 30 100.0 38 NNNNNNNNNN .............................. AATTTTAAACTTTTTGATACACATGTTTTTGTAAAATA 1540784 30 100.0 39 NNNNNNNNNN .............................. TGAATTTGTTATATTTGTGTTTATAAAGTTATTTCCAAT 1540853 30 100.0 36 NNNNNNNNNN .............................. TTATTTTCAAGTAAGCTATAAAGAAGGCTTTGATTT 1540919 30 100.0 37 NNNNNNNNNN .............................. TAAGACTATTACCATATTAAAGAAAAAGCCAAAAAAT 1540986 30 100.0 35 NNNNNNNNNN .............................. AAGTTCAGATAACGAGCTCTCTGCAAATGGGTATT 1541051 30 100.0 37 NNNNNNNNNN .............................. GAAAAAAATAAAAATGACTGACCTTTTCCTGACTGAA 1541118 30 100.0 37 NNNNNNNNNN .............................. CCTATTCTTTGCACATTGATAATGTACCAGGATACAT 1541185 30 100.0 39 NNNNNNNNNN .............................. CAGAACAAGGCCATGTCTACTGTGGCACAGTCATTTAGA 1541254 30 100.0 38 NNNNNNNNNN .............................. AAAGGGATAGAGCTGGCAAGGTTTGATAAAGGGACTAC 1541322 30 100.0 38 NNNNNNNNNN .............................. TATTAAATACTATAAGTGATTACGAATTTTAATCAAAA 1541390 30 100.0 36 NNNNNNNNNN .............................. TTCTCTTTCCGACGCTCTGGAACATTCTGCTCAACT 1541456 30 100.0 40 NNNNNNNNNN .............................. TCAAAGGTATAATCGGGACTTAATAACAAAAGCATTGCTA 1541526 30 100.0 39 NNNNNNNNNN .............................. ACCTATCCGTATAATTCATGTCCTTATTCTATATCTTTA 1541595 30 100.0 35 NNNNNNNNNN .............................. TATAAAGACCTTCAAAGACGCTTCAATTCTCTAAA 1541660 30 100.0 38 NNNNNNNNNN .............................. AATACCTCATCGGGAATGCGTCGTACACCTGGTTCGAA 1541728 30 100.0 37 NNNNNNNNNN .............................. TGAAAACCCCGTTAGATGCATCGCATGAATAGGCGTC 1541795 30 100.0 44 NNNNNNNNNN .............................. CAGGAGTATAGAGGGGTTGCTATGAATAAAATCTTTAATAAAAG 1541869 30 100.0 38 NNNNNNNNNN .............................. TATAGGCATGGCTTTATCTTTGACAACGATTATTATCA 1541937 30 100.0 38 NNNNNNNNNN .............................. GGCCACCTCTCAAACTCGATCTCTCATATCTATCAAAT 1542005 30 100.0 38 NNNNNNNNNN .............................. TCTATATCCTCAAAACCTATTATTCTAATTACATTCAC 1542073 30 100.0 39 NNNNNNNNNN .............................. CATGAAATTAGCCGATTATCAAAATCTCAAAGGCTCTTT 1542142 30 100.0 37 NNNNNNNNNN .............................. TAATACATCAAATTCAAAGGTTCTATTGCAATATGGC 1542209 30 100.0 39 NNNNNNNNNN .............................. TTGAAAAGTATGCAATCCAGCCTGTTATGGCCCTGAGTT 1542278 30 100.0 37 NNNNNNNNNN .............................. TCGAAAAATACTAAAAAAGGCAAGGGAGATTGAGGAT 1542345 30 100.0 38 NNNNNNNNNN .............................. CAGGTTTTTCACGGAGGTAAACAAAGGCGAGAGGACTG 1542413 30 100.0 37 NNNNNNNNNN .............................. AAAATTTATTTGATAGCTACCTCCATGAAGCTGAATA 1542480 30 100.0 37 NNNNNNNNNN .............................. TATAGGTATTGAAATTTTTAAAACTGGATTGCATTAA 1542547 30 100.0 38 NNNNNNNNNN .............................. ATGAATTTAATAACTGAAATAGCCATAACTGTATTCTC 1542615 30 100.0 36 NNNNNNNNNN .............................. CCTGTCTCCTGCCTGCCATACTGTTCCTATGAACTT 1542681 30 100.0 38 NNNNNNNNNN .............................. TTCAATGTCTGACGCATTGTATCTGTTTTCTAATAGCT 1542749 30 100.0 38 NNNNNNNNNN .............................. TGCGGAAATCCATTTTTTTGAAATTCCAGAGTATCGAT 1542817 30 100.0 35 NNNNNNNNNN .............................. GAATACAGATTTAGACCAGCGTCATCAAGAATTAG 1542882 30 100.0 38 NNNNNNNNNN .............................. TCATTCTCTCATTCTCAAAATCTCAAAGTCATAGTCGA 1542950 30 100.0 37 NNNNNNNNNN .............................. TTGAAATCAAAGGATATGGAGTTAGGCTTATCGTTAT 1543017 30 100.0 39 NNNNNNNNNN .............................. TTCATCTTTGCATGACGCTTTGGAAAATTCGGCTCAATT 1543086 30 100.0 36 NNNNNNNNNN .............................. TGGATCAAAGCTTGCCTTCAACGTAATATCTTTGTT 1543152 30 100.0 38 NNNNNNNNNN .............................. CCGATCCTGAATTTCTCTCAAAACAGATATTATTCGAT 1543220 30 100.0 36 NNNNNNNNNN .............................. ATATATGATCAATATGATTGTATTCGGAAAATTTAA 1543286 30 100.0 36 NNNNNNNNNN .............................. AAAGCTATTGACCTCGTACATCATCTCTCCGCCTGA 1543352 30 100.0 39 NNNNNNNNNN .............................. AAGGAAATAACGGATAACGGCGATAAAATATTAAAAATT 1543421 30 100.0 36 NNNNNNNNNN .............................. GAATATAGAAATGAAAAAAAACTGTATGCAAGTAAA 1543487 30 100.0 37 NNNNNNNNNN .............................. AAAATCCTATGCCTCTTTGAGAATTATGCAGGACATT 1543554 30 100.0 39 NNNNNNNNNN .............................. TGATAGAATACATCTCTATGAGTTCATATAACTCATTCA 1543623 30 100.0 38 NNNNNNNNNN .............................. CCGCCTTTGTTTTCATCGTTAACACCAGTTGTATCGAA 1543691 30 100.0 39 NNNNNNNNNN .............................. TGATAGAATACATCTCTATGAGTTCATATAACTCATTCA 1543760 30 100.0 38 NNNNNNNNNN .............................. CCGCCTTTGTTTTCATCGTTAACACCAGTTGTATCGAA 1543828 30 100.0 36 NNNNNNNNNN .............................. CTCTTCCTGCATTTATATCACCTCGTTGGCAATCGA 1543894 30 100.0 37 NNNNNNNNNN .............................. TATCGATAGTTTTTTGATTAAAATCGGCAATCACTTA 1543961 30 100.0 36 NNNNNNNNNN .............................. TGAATTCTGAATTTTTGAGCCTGATTTTGTTTTTTG 1544027 30 100.0 36 NNNNNNNNNN .............................. AAAATTGCTATCGATGATCCAATGCTCAATTTTCTA 1544093 30 100.0 37 NNNNNNNNNN .............................. CATGAAAAGAAAAACAAATTTGCGAATTCCATCAAAT 1544160 30 100.0 38 NNNNNNNNNN .............................. TAATCTTATGAATAATGCATTCCTATGGTTATTCTCAA 1544228 30 100.0 39 NNNNNNNNNN .............................. CATTGTCCCAACTATCCTTATAAATTCCGGAGCCGCATA 1544297 30 100.0 38 NNNNNNNNNN .............................. TATTGAATTTGATCATTCTAATCAAACAGTCTTATCAA 1544365 30 100.0 35 NNNNNNNNNN .............................. AAATCCAAACAAAGCATACCATGAATATCCATTAT 1544430 30 100.0 38 NNNNNNNNNN .............................. TTAAAAATTGCTGGTTATATTAAAAAAAAGAAATAACT 1544498 30 100.0 41 NNNNNNNNNN .............................. CAGATTCCGTGCCGACAGTAGGAAAATGGATCATTTTGAAT 1544569 30 100.0 38 NNNNNNNNNN .............................. CGATCTGATGATATAGTGTGGCATTGGAATTTTTGATA 1544637 30 100.0 36 NNNNNNNNNN .............................. TTATATATCGAATTCAACTAATCATTTTTATGAAAA 1544703 30 100.0 36 NNNNNNNNNN .............................. TGATCCAATTTTATAATCCTGCCTGCCAACAAATTT 1544769 30 100.0 36 NNNNNNNNNN .............................. CATATTCCTTTGAATTGCAAAATCGCTGGTTTTCCA 1544835 30 100.0 36 NNNNNNNNNN .............................. CAATCGTATTATCTTTATCTAAATTCGTCAGTAATC 1544901 30 100.0 36 NNNNNNNNNN .............................. TATCAAAAAATTATTTGAAAATTTATCATTTGAAAA 1544967 30 100.0 37 NNNNNNNNNN .............................. ATGGCCTATTTCAGGTGCCAGGGCGAGGAATATAAGA 1545034 30 100.0 38 NNNNNNNNNN .............................. TCATATGAACTGGCAGACGGCACAGCACCATCAAAAAT 1545102 30 100.0 36 NNNNNNNNNN .............................. AGACTTTTTTAATTCAAAATTAAATTTTACATATGT 1545168 30 100.0 40 NNNNNNNNNN .............................. TGGGCGGCTGGGTTCAATCATTTCCAAAGGAATGGGACAT 1545238 30 100.0 37 NNNNNNNNNN .............................. AAACGGCGTTGTTAGACTGTCTCTATTTCCTGATTAT 1545305 30 100.0 38 NNNNNNNNNN .............................. TGCAACCCTGTTAAATGGGATTGTTACTCCCAATATTT 1545373 30 100.0 36 NNNNNNNNNN .............................. ATGAAAAGAAAAACAAATTTGCGAATTCCATCAAAT 1545439 30 100.0 37 NNNNNNNNNN .............................. GAGAATACAGATTTAGACCAGCGTCATCAAGAATTAG 1545506 30 100.0 37 NNNNNNNNNN .............................. AGCCGACTTTATTTTTTCAATATTCCAGTTTTTGTAG 1545573 30 100.0 39 NNNNNNNNNN .............................. TAAAAAGACTGAAAATGATAATTTTCAATTTTCATTGAG 1545642 30 100.0 38 NNNNNNNNNN .............................. TAAAATAAAGCTAATTGAATGACAAAAAACGATAATGG 1545710 30 100.0 37 NNNNNNNNNN .............................. AGATGGATCTTTCCCCCAATGACCTAAACGGCGTTGT 1545777 30 100.0 37 NNNNNNNNNN .............................. TATAATCCTGCTTCCCTACATATCTAACAGAACCTCT 1545844 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 83 30 37 CTTTCAATCCTATTTAGGTTATTATTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [88.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [251,24] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_006155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1891010 28 100.0 32 TTATCTTACT ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 1891070 28 100.0 32 ACAATGACAA ............................ ACAATATTTTTTCCACTAATTATCATATTAGA 1891130 28 100.0 32 TCATATTAGA ............................ CTGGGCCTCGCTGCTAAAATGATCGTGCTCTT 1891190 28 100.0 TCGTGCTCTT ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT ========== ====== ====== ====== ========== ============================ 4 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [497,96] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 51349 28 92.9 38 GGAAAAACAC --.......................... AAAAAAGTGAAAATATCCGGGATATACAAATTATATTC 51415 28 100.0 43 AATTATATTC ............................ GAGTAAACTACAGTAGCAGGCAAAATAAATTTTTGAGGAACAG 51486 28 100.0 38 TGAGGAACAG ............................ TCTTAAAAATAGACGTCGTTTCTGACCCTTTCTTTAAG 51552 28 100.0 38 TTTCTTTAAG ............................ TTGACGTTGTTGCGTGGGATGATGAGTGATATCCTCCT 51618 28 100.0 45 ATATCCTCCT ............................ AGAGAAGACAGCCTCAAAAAAGCCAAAGAAATACCTCAAAAAGAA 51691 28 100.0 40 TCAAAAAGAA ............................ ACTAAAAATTGGAATATCGAAAAGATTAGCTCCATCTTAA 51759 28 100.0 42 TCCATCTTAA ............................ GATGATCTGCGTCATCCACTCCGGGAAGTGCATGTGGAAAAG 51829 28 100.0 44 TGTGGAAAAG ............................ TTAAAGCCTGGTTCTAGGACTACAAAGGATTGCTTAGCGCTCCC 51901 28 100.0 39 TAGCGCTCCC ............................ CATAAATCTATTCTATTATTATATTGAGGTGGTAAAATG 51968 28 100.0 TGGTAAAATG ............................ CAATAATGAA ========== ====== ====== ====== ========== ============================ 10 28 40 CTTCCATACTATCTAGTAATTCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [286,541] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 61415 28 100.0 43 AACTAAAAGA ............................ TGAGCTTGATAGGGTTCTAAAGGATTTTAGAATAAAGCTTCTT 61486 28 100.0 45 AAAGCTTCTT ............................ CTGATATTCGCCATAATAGTTCTCGTTGCCGCCGTTATCTTTATC 61559 28 100.0 48 TATCTTTATC ............................ CCACATGCAAATCTATGTTGCCGTCAAAAATTACATTGAGAGCAAAAA 61635 28 100.0 39 AGAGCAAAAA ............................ ATCAAATCAGGGCACAAACACCTGATGGACGGTGTCCAC 61702 28 96.4 38 CGGTGTCCAC ...............T............ CTTTAAGAGCCTGGTCAATTCTCCTATTTCCGGTGATT 61768 28 100.0 41 TCCGGTGATT ............................ TGACAATAAAGGAGGTTGATTAAAATGATATATAAAAATTG 61837 28 100.0 42 ATAAAAATTG ............................ ATACAATGCAATTTTTTATTCGGTCATGATTTTTTCATTATC 61907 28 100.0 48 TTTCATTATC ............................ CCACATGCAAATCTATGTTGCCGTCAAAAATTACATTGAGAGCAAAAA 61983 28 100.0 41 AGAGCAAAAA ............................ ACATTATGTAAAAATGTCTGAGACAGATCAGAGAAGATCAT 62052 28 100.0 41 AGAAGATCAT ............................ AGGGCGAGGTTGTATTAAGAGGTACGCTTTACACGGAGTTA 62121 28 100.0 39 CACGGAGTTA ............................ CATCAAACAGTTTGGAAACGAAAATAAGATAATGTATGA 62188 28 100.0 41 TAATGTATGA ............................ ATAAAGTCTCGAATATTGAGGTCAAGCCTAATGCTTCCACG 62257 28 100.0 38 TGCTTCCACG ............................ CGTAGAATCAAAAGAAGACGGCAATGGCGGTTATGTAG 62323 28 100.0 39 GGTTATGTAG ............................ TAGGCGACATCGTAATAGACATAACGGGAATAACGATGG 62390 28 100.0 39 ATAACGATGG ............................ AATGATCGGGGCGAGCTGTACAGAGCGTATAATGAATGG 62457 28 100.0 45 TAATGAATGG ............................ TTAGATAAATATAAATATCCATGTCCCGTGTGTGGTAGCCTAAAA 62530 28 100.0 TAGCCTAAAA ............................ CCGTTACTAA ========== ====== ====== ====== ========== ============================ 17 28 41 CTTCCATACTATCTAGTAATTCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [309,213] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 52031 28 100.0 47 TAGCTAAAAT ............................ TAAAAGCTATTGATCTGCTGGCTAACAACGATATATATCGAGTAGAA 52106 28 100.0 38 TCGAGTAGAA ............................ CTTGGAAAAAAATTTATGAATTATATATTTCTACATCA 52172 28 100.0 40 TTCTACATCA ............................ TATAATATTGGTGATAAAAATGGATAAGGATATGTATGTA 52240 28 100.0 42 TATGTATGTA ............................ CCGGGCAGTGCTATAGTGAAGTTAGTACACAGAGGAAAGACA 52310 28 100.0 AGGAAAGACA ............................ CGTTACTAAAA ========== ====== ====== ====== ========== ============================ 5 28 41 CTTCCATACTATCTAGTAATTCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [968,199] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_005966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2339398 28 100.0 32 AGAAGCAAGA ............................ CAGAAACGGCGGGTACACGTGTCACGGTGAAT 2339458 28 100.0 32 CACGGTGAAT ............................ ATCGCTATTCTGACCCAGAAATTAACAATCAC 2339518 28 100.0 32 TAACAATCAC ............................ TCATGATACGTGCAGTACCATCTGCTGGATTA 2339578 28 96.4 32 TGCTGGATTA ....................T....... ACTTAATGCGGAACCGACATCTGTACTAGTGA 2339638 28 100.0 32 GTACTAGTGA ............................ TATTGAGCAAGCGATTGACGGTTATGCGCGTT 2339698 28 100.0 TATGCGCGTT ............................ AGTAAATATTG ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTGTGCGGCAGTTAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [113,241] Score: 0.18/0.18 # # Final direction: R [0.41,1.19 Confidence: MEDIUM] >NC_005966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2371799 28 100.0 32 CTTTCTTACT ............................ TCACACTGCACTTGCGATTGGGGCACTATCAA 2371859 28 100.0 32 GCACTATCAA ............................ AATGTCGTGAACACTCAGACAGGCGGATACCA 2371919 28 100.0 33 GCGGATACCA ............................ CGACAGAGCAAGACATCACTGATATGTCGAATT 2371980 28 100.0 32 ATGTCGAATT ............................ GCAGTCGGACAACTTCAATCGAACGCATCATC 2372040 28 100.0 32 ACGCATCATC ............................ CTGCTTCTCGGTCATCCTTAAATCTGAATGAG 2372100 28 100.0 32 TCTGAATGAG ............................ TCACACTGCACTTGCGATTGGGGCACTATCAA 2372160 28 100.0 32 GCACTATCAA ............................ AATGTCGTGAACACTCAGACAGGCGGATACCA 2372220 28 100.0 33 GCGGATACCA ............................ CGACAGAGCAAGACATCACTGATATGTCGAATT 2372281 28 100.0 32 ATGTCGAATT ............................ GCAGTCGGACAACTTCAATCGAACGCATCATC 2372341 28 100.0 32 ACGCATCATC ............................ CTGCTTCTCGGTCATCCTTAAATCTGAATGAG 2372401 28 100.0 32 TCTGAATGAG ............................ TTCCACCAATCAAGAGTGGATTGGTCAATAGT 2372461 28 100.0 32 GGTCAATAGT ............................ AGTCGACCGCGAGACGGGAAAAAGTACGAACA 2372521 28 100.0 32 AGTACGAACA ............................ CGTAGACTGCCACCACCGCACCCCCATACATT 2372581 28 100.0 32 CCCATACATT ............................ TCGCGCAATCCATCGCGAGGGGCCTATTCGAG 2372641 28 100.0 32 CCTATTCGAG ............................ AATGAGAAAATCAAACCACCCATGATGATCGT 2372701 28 100.0 28 TGATGATCGT ............................ TACTCGAACTTGTCTGTCATATTGCCCT 2372757 28 89.3 32 ATATTGCCCT TAC......................... TGAATACTCAAATGACAATAAACAGGATAAAG 2372817 28 100.0 32 CAGGATAAAG ............................ TGTGAACAAATCCGTTGTAAGCCGCGCCTTAT 2372877 28 100.0 32 CGCGCCTTAT ............................ ATTTAAAAGCCACTCATCTGACACACCTAAAA 2372937 28 100.0 33 ACACCTAAAA ............................ TTATCGAAGTATTCTGCTTTGGGTGCGGCAATG 2372998 28 100.0 TGCGGCAATG ............................ ACCAGAAATGATTCCAGATATTCCAGATGAATCC ========== ====== ====== ====== ========== ============================ 21 28 31 CTTCACTACCGCACAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [233,185] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_005966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2448115 28 100.0 32 NNNNNNNNNN ............................ GACACCAAAGGTAATAAAGCTATGAAAGAATA 2448175 28 100.0 32 NNNNNNNNNN ............................ TTTACTCTTATTATACTATTACCCCTAACCCC 2448235 28 100.0 32 NNNNNNNNNN ............................ TCCAGCTAAAATCGTTTGAGGGTGAAACTCCT 2448295 28 100.0 32 NNNNNNNNNN ............................ ATGATTTCGAAAGGCTCTCCGAGTACGTTATT 2448355 28 100.0 32 NNNNNNNNNN ............................ ATTCCCAGCATTCACGCTGAGTGCTTCGGCAC 2448415 28 100.0 32 NNNNNNNNNN ............................ TGTGCAGCCGTTTGGCGCGCCCCAGATATGCG 2448475 28 100.0 32 NNNNNNNNNN ............................ AGGAACCGTGGCAGATTGCGTTAATATGTTAG 2448535 28 100.0 32 NNNNNNNNNN ............................ TAACGATGGAATAACGTTCAAAGAATCTAACG 2448595 28 100.0 32 NNNNNNNNNN ............................ AATTCATGAAAGATCATTCGCTGTGTTTGGGG 2448655 28 100.0 32 NNNNNNNNNN ............................ ATTTGCCGCTTTGAATATTTGATGCACCTGCT 2448715 28 100.0 32 NNNNNNNNNN ............................ AAATCGATGAGGGACAACATCAGGCACTCGAC 2448775 28 100.0 32 NNNNNNNNNN ............................ ACAGGGCAGGGAAATAACCAAAAATCGATATA 2448835 28 100.0 32 NNNNNNNNNN ............................ GACATAGGAACGATATGAAGATGATTTTTTTT 2448895 28 100.0 32 NNNNNNNNNN ............................ ATCAAGCTATCGTCATTTGGCCGATACACAGC 2448955 28 100.0 32 NNNNNNNNNN ............................ TCTGCCATGCATACAATTTGATTTGGCTGCGT 2449015 28 100.0 32 NNNNNNNNNN ............................ AATCATCAATATCTTTTTGCGCTTTGCGTGAA 2449075 28 100.0 32 NNNNNNNNNN ............................ TCTCACGTACAAAAAAAAATCCTATTTGATGT 2449135 28 100.0 32 NNNNNNNNNN ............................ GCGATTGAATACCGATAGATCGGGGATATTAA 2449195 28 100.0 33 NNNNNNNNNN ............................ ATACACTACATTGAACTGCTCGGACTTAAGCAT 2449256 28 100.0 32 NNNNNNNNNN ............................ AAAAAAAGTGTAGCCAACTTCATACAGTTACC 2449316 28 100.0 32 NNNNNNNNNN ............................ CAGGTGGCAGCGTTCCATTTTCGGGGGCAAAT 2449376 28 100.0 32 NNNNNNNNNN ............................ AAAACCACATTATAAGGCTCGGTAAATGTGTA 2449436 28 100.0 32 NNNNNNNNNN ............................ ATGAAAATAAGCCCCAATATTGTCAGTGTTCC 2449496 28 100.0 32 NNNNNNNNNN ............................ GTTTCCGCGTCATTCGGGTACAGTTGCGACAT 2449556 28 100.0 32 NNNNNNNNNN ............................ TTGAAACCTATGAACTTTGTGTTATACGTGTC 2449616 28 100.0 32 NNNNNNNNNN ............................ CTTATCAAAATCGGTGGGATCTTTGTCGTACT 2449676 28 100.0 32 NNNNNNNNNN ............................ GAATTATGCTTTAAAAAATCCTTTCGCGGGTA 2449736 28 100.0 32 NNNNNNNNNN ............................ AATCCGATTTCTGCTGTTGCTGGGGTTAGAGC 2449796 28 100.0 32 NNNNNNNNNN ............................ ATGTACTATAAGTCACATGGTAAAGACACGAA 2449856 28 100.0 32 NNNNNNNNNN ............................ GAAACGTTGAATCCAGAACCAGCAATCCCAGC 2449916 28 100.0 32 NNNNNNNNNN ............................ AAACTGTGGAGCATTACATCTACCATACTGCC 2449976 28 100.0 32 NNNNNNNNNN ............................ TAAAACAGTCAATGTTAATTGGGGTGAACAAT 2450036 28 100.0 32 NNNNNNNNNN ............................ GCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGG 2450096 28 100.0 32 NNNNNNNNNN ............................ TATAACTAGCATGTCAGAAATAAAACTATCCG 2450156 28 100.0 32 NNNNNNNNNN ............................ CGTTGGTACTGTTGCAGGTGGTGCATTGGGGA 2450216 28 100.0 32 NNNNNNNNNN ............................ GACTCCGCTACTTAAGAAAGAGAGCATAGGTG 2450276 28 100.0 32 NNNNNNNNNN ............................ TAGAAGTAACTTACGATAACATCTTTGGCGCC 2450336 28 100.0 32 NNNNNNNNNN ............................ TCAAGCATGTGATCACTAATGATTCGGTTTTT 2450396 28 100.0 32 NNNNNNNNNN ............................ TATACTCCTTATATGTAATTTACGCGTAAACC 2450456 28 100.0 32 NNNNNNNNNN ............................ CACTACATTTATACCCGCCGTTTACGCTCTTA 2450516 28 100.0 32 NNNNNNNNNN ............................ GTTTAATGTGGCGTTCAGGTCTTGTTCGCCAA 2450576 28 100.0 32 NNNNNNNNNN ............................ ACTCAGTTGACCAATCTTACTGCTTCACTTAA 2450636 28 100.0 32 NNNNNNNNNN ............................ AGAAGATTTGGTGGGCAAAAATATGGAATATA 2450696 28 100.0 32 NNNNNNNNNN ............................ ATTCTTAGCTGCATCACGCAAGATTTGCTTTT 2450756 28 100.0 32 NNNNNNNNNN ............................ CTCATCGAAACATACATTGAGAAAAATCATTT 2450816 28 100.0 32 NNNNNNNNNN ............................ AATCATCATCGACCGCAGTATTGAAGCGAAGC 2450876 28 100.0 32 NNNNNNNNNN ............................ AGCCCTTCGTATATTTGAATAGTGCATTGGCT 2450936 28 100.0 31 NNNNNNNNNN ............................ AAAAATACCCGCGCCCAAGTGATCCTGAAGA 2450995 28 100.0 32 NNNNNNNNNN ............................ AACCATATAGAATTGTTAACTTTTGTAAATAA 2451055 28 100.0 32 NNNNNNNNNN ............................ GATCAAAACAACAAGCGTACCAATGATGCCGA 2451115 28 100.0 32 NNNNNNNNNN ............................ ACAAGGGATGTATTGACCAGGTGTGAGCGCAA 2451175 28 100.0 32 NNNNNNNNNN ............................ ATTCTTGAGCCGCCTGCAGATTTGTTATGTCA 2451235 28 100.0 32 NNNNNNNNNN ............................ ATGGTTCGGGGTTGTAGCTGTACGCCCCAGAT 2451295 28 100.0 32 NNNNNNNNNN ............................ AAGAGCAAAAGGTAACTTGGATCTACCGCCAC 2451355 28 100.0 32 NNNNNNNNNN ............................ CACGGAAATTGGAATGATGATTTCGACGGTAA 2451415 28 100.0 32 NNNNNNNNNN ............................ TTGTTGAGCAGCAGAACGGCCTTTTACCAACC 2451475 28 100.0 32 NNNNNNNNNN ............................ AGATACCTCAGTCCAAGCTGCTGAATTTTATC 2451535 28 100.0 32 NNNNNNNNNN ............................ AAGAGACAACAGGGCTTATTAAAGTAACTTGT 2451595 28 100.0 32 NNNNNNNNNN ............................ AAGTTTTATTTAAGCCCAAAGCTAAAGATAGT 2451655 28 100.0 32 NNNNNNNNNN ............................ GTTAGCTGCACAAGCTCTGGGACTTTAATAAA 2451715 28 100.0 32 NNNNNNNNNN ............................ AATCGCTAACCAGTAGAACCCGCGTAGCAGCG 2451775 28 100.0 32 NNNNNNNNNN ............................ AAGCGTTGCGAGCGCTCAAAAAGTGGCTGATC 2451835 28 100.0 32 NNNNNNNNNN ............................ GTCTACCAAAGCGAAAGTATCATTTTCAATGA 2451895 28 100.0 32 NNNNNNNNNN ............................ TGTATCGGAGCTACGTCAGAAGGTCAAGCACA 2451955 28 100.0 32 NNNNNNNNNN ............................ AGGTCGATTTATCATAAACATCGGGCACGATA 2452015 28 100.0 32 NNNNNNNNNN ............................ GCCAGAAATTTTGACACTTGCGTTTAGCAATA 2452075 28 100.0 32 NNNNNNNNNN ............................ AGATTGTCTCTAAATTTAACGCGTGGCTTTGT 2452135 28 100.0 32 NNNNNNNNNN ............................ AAAGCCGAGCCCAACTTTTGACGCACAAAAAG 2452195 28 100.0 32 NNNNNNNNNN ............................ GTCAGTGATTGCTTTCATTGCCGTAGCTACGT 2452255 28 100.0 32 NNNNNNNNNN ............................ ATCCGCGCCCAATTTGTCCCACCAATCTTTTT 2452315 28 100.0 32 NNNNNNNNNN ............................ GATTCCATAGAACGTACCATTGACGCGCAACA 2452375 28 100.0 32 NNNNNNNNNN ............................ TGGATCTCTGCAGAAATCACATTGTCCAAATA 2452435 28 100.0 32 NNNNNNNNNN ............................ AACAGGCGTTACTGAGCTATGTGTCGTTAAAA 2452495 28 100.0 32 NNNNNNNNNN ............................ AAGCATGCCTTGATGCATACAACAAAATTGCC 2452555 28 100.0 32 NNNNNNNNNN ............................ TGCGAGTTCAAACTTCTTTAAAGATGCAACAT 2452615 28 100.0 32 NNNNNNNNNN ............................ CGTGGAATCATAATCATAAGCTTCACCGACAC 2452675 28 100.0 32 NNNNNNNNNN ............................ GATCAGTGGCGCGTCTACAGTGAGCGAGTGGG 2452735 28 100.0 32 NNNNNNNNNN ............................ ATAATTGCAACAACAGCATAATATACATACCA 2452795 28 100.0 32 NNNNNNNNNN ............................ CTTACTTTCGCTTGCGCTTCGTTACGAATGCC 2452855 28 100.0 32 NNNNNNNNNN ............................ TCAACCAGGATCGGATAACCATCAATTCTAAA 2452915 28 100.0 32 NNNNNNNNNN ............................ AACAGGCGTTACTGAGCTATGTGTCGTTAAAA 2452975 28 100.0 32 NNNNNNNNNN ............................ AAGCATGCCTTGATGCATACAACAAAATTGCC 2453035 28 100.0 32 NNNNNNNNNN ............................ CAAATGTAATCAGGATTAGTCGATTGCAGCGT 2453095 28 100.0 32 NNNNNNNNNN ............................ AGATCGCCTGTGCGTAGGTCAACTGCACCATT 2453155 28 100.0 32 NNNNNNNNNN ............................ AGCTGAACACGCCGTTTTTTAACTTCCGCCAT 2453215 28 100.0 32 NNNNNNNNNN ............................ ATGCACCTGATCCTGCCCAATGAGGGATTTAC 2453275 28 100.0 32 NNNNNNNNNN A........................... TGATGGTGCAGGAACCACAGCAACATCAGTCA 2453335 28 100.0 32 NNNNNNNNNN ............................ GATTGAAATACTATTAAGGCTGTTCGTAAAGC 2453395 28 100.0 32 NNNNNNNNNN ............................ ACACACGCTGCCAATTCTTCGTTAGAGTGTAT 2453455 28 100.0 32 NNNNNNNNNN ............................ AGCAGTAAAAGCCATGACCGTTAAGATCGCTC 2453515 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 91 28 32 GTTCGTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [99,81] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_006138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 198143 36 97.2 34 TACCAAGATC ........C........................... TCGCTCAGGGTTGCTCATATGCTCCTGCAGGGTC 198213 36 100.0 35 CTGCAGGGTC .................................... ATTTTTTCAGGTCGATATAGCGCATATCTTTGGCG 198284 36 86.1 38 ATCTTTGGCG ..........A.........G............--- CACGCAGACCTGCAGGCCGACCGTTATAACAGTCCTTG 198358 36 94.4 35 ACAGTCCTTG ........C.............A............. CGTTTGCCACAGGAAAGAGCATCGGCGGTTGATCG 198429 36 100.0 35 CGGTTGATCG .................................... TTCCCGAGATCGGTCAGGTCATAGACGCCAAACTG 198500 36 100.0 34 CGCCAAACTG .................................... GTCGACAAGGTAGGAGCCGGGCCGAGAGTAGGGG 198570 36 100.0 35 AGAGTAGGGG .................................... TCGTCGTCCCAATCCATTCCGCTTGCAACAAACTG 198641 36 100.0 34 CAACAAACTG .................................... GTACAGACAGGCTTATCATCAGAGTAATAGGTGG 198711 36 100.0 35 TAATAGGTGG .................................... ATGGGCCGAATGGCAACTCTACGAGTTCTATCCTG 198782 36 100.0 35 TTCTATCCTG .................................... TGTCTATCGCCTTGATAGCGGTAGATCCCTTGATG 198853 36 100.0 36 TCCCTTGATG .................................... CCGATGATCGGGCAATACGTCACTTGTATCGGGTCG 198925 36 100.0 36 TATCGGGTCG .................................... AACCTCGGTCGATGTTTGTGGGGCTGTGTTGATTTG 198997 36 100.0 35 TGTTGATTTG .................................... CAGCTCAAACTGATTTTGAGGACAGTGATAAACAG 199068 36 100.0 TGATAAACAG .................................... TGCCAGTTAA ========== ====== ====== ====== ========== ==================================== 14 36 35 CTTCAATGTAGTCACCCCTTTCGAGGTGATTGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [67,148] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_006155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2964428 28 100.0 32 NNNNNNNNNN ...GATTAT................... CCCAGCGTCGGGTCGGATACTTGCCACGTAAC 2964488 28 100.0 32 NNNNNNNNNN ............................ TAGAGTGTTTTTTCTGACGATGTTCCTTGCTG 2964548 28 100.0 32 NNNNNNNNNN ............................ CCAGAGCCTCCTGATACATCTGATCCCACAGT 2964608 28 100.0 32 NNNNNNNNNN ............................ CATCACAATGCTCTGGATGACGCAATTCATCA 2964668 28 100.0 33 NNNNNNNNNN ............................ TGATTTTGATTATCCTATGCCAGCCGAATATAG 2964729 28 100.0 32 NNNNNNNNNN ............................ TAAAGACCGTTGAATTTAAACAAGGTATCAAC 2964789 28 100.0 32 NNNNNNNNNN ............................ TGAAAGGGATCGGGCTGAATGCGCAAGACGCG 2964849 28 100.0 33 NNNNNNNNNN ............................ AGTCAGGGCTATGAGGGGGCTGCAATGGGCGCG 2964910 28 100.0 32 NNNNNNNNNN ............................ GTTTTTTCGACCTTTTCCTCCATCAGCGAGGC 2964970 28 100.0 32 NNNNNNNNNN ...........................T ACCGTTATTAATGGGTGGCGCTGGCGCTTCAT 2965030 28 100.0 32 NNNNNNNNNN ............................ ACGTGGCTAGTTATTACGATACAATTAATCTC 2965090 28 100.0 32 NNNNNNNNNN ............................ GCTGCTTTCTTGTCAATCCCTGACGGGTTCTT 2965150 28 100.0 32 NNNNNNNNNN ............................ ATCTCCGGAGAGTTCAACTGTGGGGTGGTGTA 2965210 28 100.0 32 NNNNNNNNNN ............................ TTAAGCATCACACAGCCGATGGTGTGGTTGAT 2965270 28 100.0 33 NNNNNNNNNN ............................ CCGGATAGCGAAACTTAATGAAAATATTATCGC 2965331 28 100.0 32 NNNNNNNNNN ............................ ACCAGTTGTACATGTGTCAGTTTGTCGACTCT 2965391 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 17 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [355,339] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 2339383 18 94.4 56 CCGCTTCACC .............T.... ATAGCCCGAGCCGAACTCCAGATTCTGCGCGTGGACGAGGCTCCGGAGCCCGCTTG 2339457 18 100.0 57 AGCCCGCTTG .................. GCACTCGCGAACGAACCGCAGGTTTTGCGCGCAGCCGTCCTCTCCAGCCGCCTCACC 2339532 18 94.4 56 CCGCCTCACC .............T.... ATAGCCCGAGCGGAACTCCAGATTCTGCGCGTGGACGAGGTTCCGGAGCCCGCTTG 2339606 18 100.0 AGCCCGCTTG .................. GCGCTCGGGAA ========== ====== ====== ====== ========== ================== 4 18 56 CGCGCAGAACCTGAAGTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [932,267] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 355482 37 100.0 35 NNNNNNNNNN ..................................... AGGTCGGCGCTGTACTCGGCGTCAGTCTTCTGCCG 355554 37 100.0 36 NNNNNNNNNN ..................................... GATGATGTTGCCGGCCAGGATGCGAATTTCGGCCAG 355627 37 100.0 40 NNNNNNNNNN ..................................... CTGCAGGGGGATGATGTTTGCGCCCTCCACCGGGCCGGGT 355704 37 100.0 35 NNNNNNNNNN ..................................... ACCACAGTGGCCGCCCGGTTGATGGTAACGGTCCG 355776 37 100.0 35 NNNNNNNNNN ..................................... CCCCAGGAGGAAAACCGGTTGCTCCGCCAGCTCAT 355848 37 100.0 37 NNNNNNNNNN ..................................... TTCTCGACCATGGCGATCTCTTTGGCGCAGTTGACGG 355922 37 100.0 35 NNNNNNNNNN ..................................... ATCGATATGAAGTGGATAGAAGAGGAAGAAGGTGA 355994 37 100.0 37 NNNNNNNNNN ..................................... GTGTTCGAGGAGAACGGAACCCCGGTTGATGTTGCGG 356068 37 100.0 34 NNNNNNNNNN ..................................... GTCATCCAGAGCGCCACCAGGGCGGCGCCCACGG 356139 37 100.0 38 NNNNNNNNNN ..................................... ATCGCTCATTCCTCCAGATGCGCAAGACCTTGCGCTGG 356214 37 100.0 35 NNNNNNNNNN ..................................... ATGACCCTGCAGCCTATCTGGGCGGCGATGCAGGG 356286 37 100.0 34 NNNNNNNNNN ..................................... GAGCGGATGGCCGCCGGTCTGAAAAACGCCCACC 356357 37 100.0 37 NNNNNNNNNN ..................................... ATGATGACCATCTCGATGCAGGAGATCGAGCGGGAGC 356431 37 100.0 35 NNNNNNNNNN ..................................... GTGGCCGAGGCCGAGAGGGTGAAGCACTACGCCGG 356503 37 100.0 35 NNNNNNNNNN ..................................... ATGGTGGAGTCGAGGATGAACCAGCGGCCATCGTG 356575 37 100.0 36 NNNNNNNNNN ..................................... CTCCTTCAGTGAGTTGATAGTCCCCTGCACTTAGTC 356648 37 100.0 34 NNNNNNNNNN ..................................... CTCGGCCTCGCATGCGACCTGCTGGGAATCGGAC 356719 37 100.0 37 NNNNNNNNNN ..................................... CTCATCGTCCCACATGACGATTGCCTGCCCTGTCCGC 356793 37 100.0 36 NNNNNNNNNN ..................................... TCCCGGTAGCCGGCGAGGGTCGCCTGCTCGACGATG 356866 37 100.0 36 NNNNNNNNNN .................A................... AGGAATCCGTGGTCCAAGGAGCACTGGAACCTGACG 356939 37 100.0 36 NNNNNNNNNN ..................................... CTTCGTGCAGTACGACCTCCACGTGATGCGTGAGGG 357012 37 100.0 38 NNNNNNNNNN ..................................... TTCGGGGTGCGGTGGGTGCCCCCCACGGAGCGCACAGG 357087 37 100.0 37 NNNNNNNNNN ..................................... CTGGTCGCCACCAAGAAGGCCCCTGGCCGCGAGTAAG 357161 37 100.0 35 NNNNNNNNNN ..................................... GTCTTCCCACTCCACAACGCCGCCGAGGGCCTCGG 357233 37 100.0 33 NNNNNNNNNN ..................................... CTCGGTCGGCCGCGAAAAGTCCTACCCACACGA 357303 37 100.0 35 NNNNNNNNNN ..................................... CTTACGCCGTGGTTGAGGTGGACTAACCAGCCCAG 357375 37 100.0 35 NNNNNNNNNN ..................................... GTGAATGGGGTTGCGCTCGCGCACTTCCTCTTTAG 357447 37 100.0 37 NNNNNNNNNN ..................................... ACCAGCTACCGACAGATGCAGCTCGCCTACAAGGCCT 357521 37 100.0 1 NNNNNNNNNN ...........................CCCGACTTTG NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 29 37 35 GTAGCACCCGGCCGCGAGGCCGGGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-18.00,-17.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [259,28] Score: 0.18/0.18 # # Final direction: F [5.83,0 Confidence: HIGH] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 721898 29 100.0 33 TTTCGTTAGT ............................. ACGTCTTCTGACGACACTGAGTCACTCCGTAGC 721960 29 100.0 33 ACTCCGTAGC ............................. TATGAAGTTAGAGGCTCACCTGCGGCCGAAGCC 722022 29 100.0 33 GGCCGAAGCC ............................. GAGCACCCCCAGCAGCGCGTTCCACCCCCCGAA 722084 29 100.0 32 ACCCCCCGAA ............................. CGAGAAGTAGTCCCATCCACTCCGCCGCATCT 722145 29 100.0 33 CGCCGCATCT ............................. TATGAAGTTAGAGGCTCACCTGCGGCCGAAGCC 722207 29 100.0 33 GGCCGAAGCC ............................. GAGCACCCCCAGCAGCGCGTTCCACCCCCCGAA 722269 29 100.0 32 ACCCCCCGAA ............................. CGAGAAGTAGTCCCATCCACTCCGCCGCATCT 722330 29 100.0 32 CGCCGCATCT ............................. GAGGAAGCTTCAGTCTTGGAAACAGGAGTTGC 722391 29 100.0 32 CAGGAGTTGC ............................. TTGCGGGTACAAACGATGGTTCCGCCGTCGAA 722452 29 100.0 33 CGCCGTCGAA ............................. ATTCATCCTATGTCCCAGACTTATAACGAAGAA 722514 29 100.0 32 TAACGAAGAA ............................. GAGTTCAAGATCGTCTCTGCCAACACTGATGT 722575 29 96.6 32 ACACTGATGT ............................A GCTTGTTCTGCGGTTCATGTAGCGGTTGACAC 722636 29 100.0 34 CGGTTGACAC ............................. TCCCGACCGGCCGCAACCGCCGGAGCGTCTGGAC 722699 29 100.0 33 GCGTCTGGAC ............................. CGATGCACGAACCGCGGATGCGGGTGCTCTCCC 722761 29 100.0 32 GTGCTCTCCC ............................. AAGTGGCCTGGGACAATATTAGGCGGGCCGCA 722822 29 100.0 32 GCGGGCCGCA ............................. AGGCGGGCCACCTCCAGGATGGCCTCCACCGG 722883 29 100.0 33 CCTCCACCGG ............................. TAAAGCCGCTTCGGGCGGGCAGGGGGGACATGC 722945 29 100.0 32 GGGGACATGC ............................. ATGTACGGACTGCATGGACGCAAACGGACTGC 723006 29 100.0 32 AACGGACTGC ............................. ACCCAATTCGCTACATTTCCCATTTTGCAGTA 723067 29 100.0 33 TTTTGCAGTA ............................. TAGTCAATGGGCATAGTGCAAACGTCAGTAGTG 723129 29 100.0 32 GTCAGTAGTG ............................. TGGCCTGCCTTGGAATCGGGGAGGAGAGAGAT 723190 29 100.0 32 GGAGAGAGAT ............................. GGCGGATAAAGGGGGGGTTAGTCGCCCAGCGC 723251 29 100.0 32 CGCCCAGCGC ............................. TCCTCGCCCGCGGTCGTCAACTCCTCGGCCCA 723312 29 100.0 32 CCTCGGCCCA ............................. CAGCGGATGAGCAGGCGAAGCCAGCGGGGGAC 723373 29 100.0 33 AGCGGGGGAC ............................. GCGCGGCTTGAGGGCGAGGAAAAGGCCGGTAAA 723435 29 100.0 32 GGCCGGTAAA ............................. AACGGCGAGTTGGCGCTAGCTGCGGTTGCGTA 723496 29 100.0 32 CGGTTGCGTA ............................. CGTGTCGCGAATGCGAAGGCGCGGCTTGAGGG 723557 29 100.0 32 GGCTTGAGGG ............................. TTATCGTTGCGGCGTCTAGCTCCTCCAGCACC 723618 29 100.0 CTCCAGCACC ............................. AAGCCAATTT ========== ====== ====== ====== ========== ============================= 29 29 32 GTCGTCCCCACGCGCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [536,26] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 725421 29 100.0 32 NNNNNNNNNN ............................. CTGTTCAAGCGTCGTAGTCGCAAACCGAAGGT 725482 29 100.0 33 NNNNNNNNNN ............................. TCCAGGGCCCACCACCAGAGCAGGTGCAGGTGG 725544 29 100.0 32 NNNNNNNNNN ............................. ACGGCCGTTCGCAGGGCGGAGTCCGGTGCCAT 725605 29 100.0 32 NNNNNNNNNN ............................. TCGCCCCTGCAGCTCATCTACCTGCCCCGGGG 725666 29 100.0 32 NNNNNNNNNN ............................. GAGGGGTGATCATGAACGAGGATGAACTGCGT 725727 29 100.0 34 NNNNNNNNNN ............................. CGTTGCTTGCGTCGTCATACCGCTCAACAGTAGC 725790 29 100.0 33 NNNNNNNNNN ............................. TGAGGCTGCGTAGATGGTGCGTGCGGTGCGGAA 725852 29 100.0 32 NNNNNNNNNN ............................. GCACCAGCGGAGGAGCCTCACCGCCCCTCACC 725913 29 100.0 32 NNNNNNNNNN ............................. AGGGGTTCACCGCCCTGGATGTGCTCCGGTCC 725974 29 100.0 32 NNNNNNNNNN ............................. GACGGTGGTCAGCCAACGATGACGGAGTGGGA 726035 29 100.0 33 NNNNNNNNNN ............................. TGCTGAACGCTCGTCGGTTCTGCAACAACCTTC 726097 29 100.0 33 NNNNNNNNNN ............................A GGGTATGGCACCGAACACCCACAAACGGGGTTC 726159 29 100.0 33 NNNNNNNNNN ............................. CTGGACGGTATGCCCTGTCTTTGGCTCGTGAAC 726221 29 100.0 31 NNNNNNNNNN ............................. CGGTCAACAAGGGCAAGGCCTGGGTCCACCC 726281 29 100.0 32 NNNNNNNNNN ............................. GTGGCGTCATCGAAGTTGATCACGTCCGCAGC 726342 29 100.0 32 NNNNNNNNNN ..G.......................... GAGTGCGAGAGACCATGACGCGACTTCTTTGC 726403 29 100.0 32 NNNNNNNNNN ............................. CGCCAGGAACATGCCCCGGAGCGTCAGCCGGT 726464 29 100.0 32 NNNNNNNNNN ............................. GTGTACTGCATCTACGTGGACGGCAATCTTCG 726525 29 100.0 34 NNNNNNNNNN ............................. CACATCATCGGCCTCCTGGGCCACCCTGGACAGC 726588 29 100.0 32 NNNNNNNNNN ............................. AACTCGCTCAGACAGTCGGTGCTGCACCAGTT 726649 29 100.0 33 NNNNNNNNNN ............................. GACATTCTGGCACCGGGCGGTGTGGACCGGTCC 726711 29 100.0 32 NNNNNNNNNN ............................. AAGCGCAAGGCGAGCCTTAAACGAGAGTTGTC 726772 29 100.0 32 NNNNNNNNNN ............................. TCCGGCATCCCAGCCCGCCTGGAGTGGGTCGA 726833 29 100.0 32 NNNNNNNNNN ............................. CTAGGGAGGTATCGCCATGAAGACGAAACGTC 726894 29 100.0 32 NNNNNNNNNN ............................. TTCGAGAGGAGGGAGAGAATGGAGCGGCGCCA 726955 29 100.0 32 NNNNNNNNNN ............................. TTGCGTAACGCCTACAAAGCTAGGGAGGTATC 727016 29 100.0 32 NNNNNNNNNN ............................. CGATCCGTCAGACATGATCCAGTACCCCTGCG 727077 29 100.0 32 NNNNNNNNNN ............................. CTCTTTCCGGTCAGGTCGTCCCCTACCTCGAT 727138 29 100.0 32 NNNNNNNNNN ............................. GCGTGATCCCCGGTCGCCACGGCGAACTCTGG 727199 29 100.0 32 NNNNNNNNNN ............................. GAGGAGGGTTTCTCCGTGACCATCCTAGAGAA 727260 29 100.0 32 NNNNNNNNNN ............................. TGCCTGCAGGTGCTGTTCAGCCTCCTGCTGGC 727321 29 100.0 32 NNNNNNNNNN ............................. GCGAGACCATCTACCCATGGGAGGCCGGGCCC 727382 29 100.0 33 NNNNNNNNNN ............................. TGCTCCAGGGCCTCGCCCATGGCCGACGCCGGC 727444 29 100.0 31 NNNNNNNNNN ............................. AGCTGCTCAAAAGGAGGGAGAGTGCCATGAC 727504 29 100.0 32 NNNNNNNNNN ............................A CCAGCTGAGCCGCTTTAAGCATCGCTGTCGCC 727565 29 100.0 32 NNNNNNNNNN ............................. TCCCTCAGCAGCTGACCTGCCAGGGCGTAAAT 727626 29 100.0 32 NNNNNNNNNN ............................. TCGCGGAGGCCGAACGCCGGCAGGCCGCCGGC 727687 29 100.0 33 NNNNNNNNNN ............................. CACGTAGCAGGAGGCGAGATGAGAGCAGCCGTG 727749 29 100.0 32 NNNNNNNNNN ............................. ATCTCCAACCGTGAGGCGGCCGAATGGATCAA 727810 29 100.0 32 NNNNNNNNNN .....T....................... GCAACGTGCATCTGGCTACCAAGACCCTGGTC 727871 29 100.0 32 NNNNNNNNNN ............................. CGGCGCCCGACCGGCGACATTCTCGTGCGACT 727932 29 100.0 32 NNNNNNNNNN ............................. GAAACCTGCTGGTACATCACTTACACCTACCG 727993 29 100.0 32 NNNNNNNNNN ............................. TCGTCCTGCCAGCCGCCCACCCACTTAATCCC 728054 29 100.0 32 NNNNNNNNNN ............................. ATGAAGCGTCGTCACATGAGAGTTCGTCCTGC 728115 29 100.0 34 NNNNNNNNNN ............................. TCCGCCCGGGCCACCGTGAACGGCAACAGCCTCC 728178 29 100.0 32 NNNNNNNNNN ............................. ATGAGCAGGGTCCCGTCCAGCTCAGCCGCTAC 728239 29 100.0 32 NNNNNNNNNN ............................. TCGAGGAACAGAACCGGGCGGCCCAGAAGCTC 728300 29 100.0 32 NNNNNNNNNN ............................. GTGACCAGCTACCTGTACCACCCACCCAAGCA 728361 29 100.0 34 NNNNNNNNNN ............................. CGGGCCGCCAAGGAGGCGATCGAGGCCTCCCAGC 728424 29 100.0 32 NNNNNNNNNN ............................. CGCCGCGAGCAGGCCATCATGACCCTCGCCGC 728485 29 100.0 31 NNNNNNNNNN ............................. GCCCTGCCCAAGCACATCACGGCCGAGCGCC 728545 29 100.0 33 NNNNNNNNNN ............................. ATAAGGGTCTTCACCGGATGACACCTCCGGAAC 728607 29 100.0 32 NNNNNNNNNN ............................. CTGCCCCTCCCTGATGATCCGGCCGGGGGCCC 728668 29 100.0 30 NNNNNNNNNN ............................. GAGGCGGCGCAGAATATCGCTTACGGCGCT 728727 29 100.0 32 NNNNNNNNNN ............................. GGCCCGAGCGGCCTTGTCCACGCCCTGCAGGC 728788 29 100.0 32 NNNNNNNNNN ............................. GACGCTGCCAGCATCCAGCAGTTGGGCTGCCA 728849 29 100.0 32 NNNNNNNNNN ............................. TCGGGAATTACCGTGCTCTACACGGCGCAGGA 728910 29 100.0 1 NNNNNNNNNN ......................CACG..C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 58 29 32 GTCGTCCCCACGCGCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [126,894] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_006270 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 815942 23 100.0 49 NNNNNNNNNN ..TC.A..G.....G.....TC. GACCGGAGCGACAGGCCCGACAGGAGCAACGGGAGCGACAGGCCCGACA 816014 23 100.0 49 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 816086 23 100.0 67 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACAGGAGCGACAGGCCCGACA 816176 23 100.0 85 NNNNNNNNNN .....A........G..C..... AACGGGAGCAACCGGCCCGACAGGCCCGACAGGAGCAACAGGGGCGACAGGCCCGACAGGAGCAACGGGAGCGACCGGCCCGACA 816284 23 100.0 76 NNNNNNNNNN .....A........G..C..CC. GACAGGAGCGACCGGAGCAACAGGAGCGACCGGAGCAACAGGAGCGACAGGAGCGACAGGAGCAACAGGAGCGACC 816383 23 100.0 58 NNNNNNNNNN .....A..G........C..CC. GACCGGCCCGACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 816464 23 100.0 58 NNNNNNNNNN .....A..G.....G..A..CC. GACAGGTCCAACGGGAGCCACCGGCCCGACGGGAGCAACGGGAGCGACCGGCCCGACA 816545 23 100.0 40 NNNNNNNNNN ........C........A..TC. AACAGGAGCGACAGGAGCGACCGGAGCAACAGGTCCAACA 816608 23 100.0 31 NNNNNNNNNN ........C........A..... GACAGGTCCGACGGGAGCGACCGGCCCGACA 816662 23 100.0 31 NNNNNNNNNN ..TC....C.............. GACAGGTCCGACCGGAGCAACGGGAGCGACA 816716 23 100.0 58 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACGGGAGCAACGGGAGCGACAGGTCCGACGGGAGCGACA 816797 23 100.0 40 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACAGGTCCAACAGGAGCGACA 816860 23 100.0 67 NNNNNNNNNN ....................... AACGGGAGCGACAGGTCCGACAGGAGCAACAGGAGCCACCGGCCCGACCGGAGCCACCGGAGCAACA 816950 23 100.0 49 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACGGGAGCGACAGGAGCAACGGGAGCGACC 817022 23 100.0 58 NNNNNNNNNN ..CC................... AACGGGAGCAACAGGTCCAACAGGAGCGACAGGAGCGACAGGAGCAACGGGAGCGACC 817103 23 100.0 40 NNNNNNNNNN ..CC....C.....C..C..... AACAGGAGCGACAGGAGCAACGGGAGCAACGGGAGCGACA 817166 23 100.0 31 NNNNNNNNNN ..TC.............A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817220 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817265 23 100.0 31 NNNNNNNNNN .................A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817319 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817364 23 100.0 22 NNNNNNNNNN ...........TC.G........ AACGGGAGCAACAGGTCCAACA 817409 23 100.0 40 NNNNNNNNNN ........C.............. CACCGGCCCGACCGGAGCCACCGGAGCAACAGGTCCAACA 817472 23 100.0 22 NNNNNNNNNN ........C.............. CACCGGCCCGACAGGAGCGACC 817517 23 100.0 22 NNNNNNNNNN .....C..C.............. GACAGGTCCGACAGGAGCAACA 817562 23 100.0 22 NNNNNNNNNN ....T.................. GACAGGTCCAACAGGAGCGACA 817607 23 100.0 22 NNNNNNNNNN ..............T........ AACAGGAGCCACCGGCCCGACC 817652 23 100.0 22 NNNNNNNNNN .....A..G.............. GACAGGTCCAACAGGAGCCACC 817697 23 100.0 31 NNNNNNNNNN .....A.....TC....A..... CACCGGTCCGACCGGTCCAACAGGAGCGACA 817751 23 100.0 22 NNNNNNNNNN .....A..C........A..... CATCGGCCCGACCGGAGCGACC 817796 23 100.0 31 NNNNNNNNNN ..CC.............A..... GACCGGCCCGACAGGAGCAACAGGAGCGACC 817850 23 100.0 1 NNNNNNNNNN ..CC.......TC....A..... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 31 23 40 GGAGCGACAGGAGCAACGGGAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [35-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [700,772] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_006300 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1630162 37 100.0 36 TTACTCCAAA ..................................... CAACTATCGTTACAAAACTAGTGACGCAATGAATGG 1630235 37 100.0 34 CAATGAATGG ..................................... AAAACGCTTACGGCGATATGGACGAGAGTTATCT 1630306 37 100.0 33 AGAGTTATCT ..................................... GACAACGACCGGCTATGACGGCAAATTATATAT 1630376 37 100.0 35 AATTATATAT ..................................... TCAAATTCATTCGTCGTTTAGTCACAATCCAAATC 1630448 37 100.0 36 AATCCAAATC ..................................... CTAACCAATATCAATTATTAACCATCAACTACCAAT 1630521 37 100.0 35 AACTACCAAT ..................................... TAAACTTGATACATCTATTGTCGAAGAAGTATTAA 1630593 37 100.0 34 GAAGTATTAA ..................................... TAAACATTTGGCCAAATATGGTGTATGTGAAACA 1630664 37 100.0 35 ATGTGAAACA ..................................... AAAATCACTTTAGTAAAAATGAATGCAGTCACTAA 1630736 37 100.0 36 CAGTCACTAA ..................................... TTAAAGGGCTATTTGCCAAAAAATTACTACGCCACT 1630809 37 100.0 36 CTACGCCACT ..................................... ATGTGCAAGCGCTATACCCAATAGATATGCTAAAAA 1630882 37 100.0 33 ATGCTAAAAA ..................................... TTTATCAATCCCGTTCAGGACGCCAATACATGA 1630952 37 100.0 CAATACATGA ..................................... TGCGGTAAGC ========== ====== ====== ====== ========== ===================================== 12 37 34 GTTTCAATCCCTTTAAGACAGGGCAAGGTCTTTCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [464,220] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_006366 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 45916 28 100.0 32 GATGTTGCTA ............................ TTTACAATTCAGTTACAAATTAATTATTGCAA 45976 28 100.0 32 ATTATTGCAA ............................ TAAAGGCTGAATCACTTGCGGCCATGTACATA 46036 28 100.0 32 CATGTACATA ............................ TAGGCAAGTGGGATAAGCCTTACATGCAAAAA 46096 28 100.0 32 CATGCAAAAA ............................ GTAACTCAACAGCAGGGCCTTTCTGAGGCCAA 46156 28 100.0 32 CTGAGGCCAA ............................ GTTATGCGAATGGTAGTTTGTCGGATTATTTT 46216 28 100.0 32 GGATTATTTT ............................ TGTTAGATTTTTGTATGGGATCAGGTACTACA 46276 28 100.0 32 AGGTACTACA ............................ GAAGGATCATTAGAAAATCTTTTACGCAAACT 46336 28 100.0 32 TACGCAAACT ............................ GTAAGATTGTTTTTTCTCCTAATTCTGCATTA 46396 28 100.0 32 TTCTGCATTA ............................ CATCGAGCCACGGCAAAAATTGGTTTTTAAAA 46456 28 100.0 GTTTTTAAAA ............................ TCTGCTCTAAA ========== ====== ====== ====== ========== ============================ 10 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [445,233] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_006366 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 43277 28 96.4 32 ACATAATAAC -........................... ATATGTTTCGAATTCTTGATTAAAAATATCGC 43337 28 100.0 32 AAAATATCGC ............................ AGAAGACCTTTTAAGCGCCGTTGTCGGCATTT 43397 28 100.0 32 GTCGGCATTT ............................ AGGTCTTTTTGCCCGTTTTTTTATCTTCATGT 43457 28 100.0 32 ATCTTCATGT ............................ TACGTCTTTAGATGAGGTCATAACCACGTATT 43517 28 100.0 32 ACCACGTATT ............................ TGTCTCTGTTTGCTTTGGGGCACAATCCAGCA 43577 28 100.0 32 CAATCCAGCA ............................ AGAATCCTGAGGATTATGTTTTGTTCGAATTG 43637 28 100.0 32 GTTCGAATTG ............................ GTTAGGTTCCGGAGGCGGTGACACGGCGGACA 43697 28 100.0 32 ACGGCGGACA ............................ GCGCAAAGGTTAGAAAGCAAGTCATGAGGTAA 43757 28 100.0 32 CATGAGGTAA ............................ AGTTTATCTGATGTTGAAAGATTAACTGTTAA 43817 28 96.4 32 TAACTGTTAA ............T............... GATAAAAGCGGTCTATGCGGCCGACAAATTCC 43877 28 100.0 32 GACAAATTCC ............................ ACATTTGTGTTAGGTTTAGTTGCGCCTCTTGT 43937 28 100.0 32 CGCCTCTTGT ............................ CTTATAAGCCATCAAATGCTGCTGGAACTGCT 43997 28 100.0 32 TGGAACTGCT ............................ TCTACAGAAAGAAGGCTATATCTAAATAGATA 44057 28 100.0 32 TAAATAGATA ............................ ACACCAAGTTTAGGGCGTATGTCGGCGGCTTT 44117 28 100.0 32 CGGCGGCTTT ............................ CTTGAGTTGCAGACCCCGGGTCTTGCTGCTGA 44177 28 100.0 32 TTGCTGCTGA ............................ CGCCGGTATATGACGCTGAATTAAATTTTATA 44237 28 100.0 32 AAATTTTATA ............................ ATTGACGATAGCGTTACCTACTAAGTGCAAGC 44297 28 100.0 32 AAGTGCAAGC ............................ CATGGAGTAATTATTAATCTAAGTTCAGGGCA 44357 28 100.0 32 GTTCAGGGCA ............................ CAGGTAAAATATATTCGACTGAAATCTCAATC 44417 28 100.0 32 AATCTCAATC ............................ CTGGTCGAGCTCGTCATAGCTAAGGGCTAGTA 44477 28 100.0 32 AGGGCTAGTA ............................ TAGCAATTACTTGCTTTGCTTCTTCACATATC 44537 28 100.0 32 TTCACATATC ............................ GAAAGGGCAATAGTTAAGCGCATGGCACAAGC 44597 28 100.0 32 TGGCACAAGC ............................ TGACCCGTCAACTAAATGGTGGAGCACGTTTT 44657 28 100.0 32 AGCACGTTTT ............................ TGTATTTGTTTTTCAAGCTGCTCAAGCTCAGA 44717 28 100.0 32 CAAGCTCAGA ............................ AATACCGGCACATTCACGGTGTAGGTGCACAT 44777 28 100.0 32 AGGTGCACAT ............................ TCTTCCGTACTTCTCACCATACTCACCACAGT 44837 28 100.0 32 TCACCACAGT ............................ TTAACGAAAGGTTTATTTACAGTTCAAAATGA 44897 28 100.0 32 TTCAAAATGA ............................ ATGCTAGTACCTACCCTATCGTTCATGAATTA 44957 28 100.0 32 TCATGAATTA ............................ TCTACAAAAGAGGCCATAAGAGCAACTCTCAA 45017 28 100.0 32 CAACTCTCAA ............................ ATTAGATGCCCAGCGTGTAAAGGGACTAAGAA 45077 28 100.0 32 GGACTAAGAA ............................ CTTTTACTGATTCTTCAACTATCTGTTCAATT 45137 28 100.0 32 CTGTTCAATT ............................ GTTAGGTTCTGGCGGCGGCGACACGGCAGACA 45197 28 100.0 32 ACGGCAGACA ............................ ATTAACAGCCTTCATCATTTCCAAGCCCGCAG 45257 28 100.0 32 AAGCCCGCAG ............................ AATATGATGCGTGTAAAATATTAGAGCTGGAA 45317 28 100.0 32 AGAGCTGGAA ............................ CCATTATCTGAGCAGATTAAAAAAATGGTAAT 45377 28 100.0 32 AAATGGTAAT ............................ GCTGAATGATTCTCCGAAAACCCCATCGAGTG 45437 28 100.0 32 CCATCGAGTG ............................ GTTCCCCATCTCTTGAGCAGAAAAACAATTTT 45497 28 100.0 32 AAACAATTTT ............................ TTAGAGCAATACATACGAGATAATTATACGCC 45557 28 100.0 32 ATTATACGCC ............................ TGTTTTATAGTGAGATTCGTTTAAGTCTGATA 45617 28 100.0 32 AAGTCTGATA ............................ AGAGTATAGGAAATTAGAAGCTGGAACAAAAA 45677 28 100.0 32 GGAACAAAAA ............................ CACCATATAAGAACAATCGAAGTTCCGAATGT 45737 28 100.0 32 TTCCGAATGT ............................ TTGTTTTAGGCAGTTTAAAAGGATTGTTTACA 45797 28 100.0 32 ATTGTTTACA ............................ CAACATCGGGGGGTTTAGCCTCAGCAACACCA 45857 28 100.0 572 AGCAACACCA ............................ TGCTAGGAGAGTTATAAATGCTGATGTTGCTATTTCTAAGCTGCCTGTACGGCAGTGAACTTTACAATTCAGTTACAAATTAATTATTGCAATTTCTAAGCTGCCTGTACGGCAGTGAACTAAAGGCTGAATCACTTGCGGCCATGTACATATTTCTAAGCTGCCTGTACGGCAGTGAACTAGGCAAGTGGGATAAGCCTTACATGCAAAAATTTCTAAGCTGCCTGTACGGCAGTGAACGTAACTCAACAGCAGGGCCTTTCTGAGGCCAATTTCTAAGCTGCCTGTACGGCAGTGAACGTTATGCGAATGGTAGTTTGTCGGATTATTTTTTTCTAAGCTGCCTGTACGGCAGTGAACTGTTAGATTTTTGTATGGGATCAGGTACTACATTTCTAAGCTGCCTGTACGGCAGTGAACGAAGGATCATTAGAAAATCTTTTACGCAAACTTTTCTAAGCTGCCTGTACGGCAGTGAACGTAAGATTGTTTTTTCTCCTAATTCTGCATTATTTCTAAGCTGCCTGTACGGCAGTGAACCATCGAGCCACGGCAAAAATTGGTTTTTAAAA 46457 28 100.0 GTTTTTAAAA ............................ TCTGCTCTAA ========== ====== ====== ====== ========== ============================ 45 28 44 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [518,232] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_006300 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 952720 32 100.0 33 TAGCGGATGT ................................ AAAACAATCTATGCTTACGATGTTTTTATAAGC 952785 32 96.9 35 TTTTATAAGC .C.............................. GCCGTAGCCGTGATTTACGCACGCGTCAAAAAACT 952852 32 100.0 36 TCAAAAAACT ................................ GCCTCATAACTAATACCTGCCGGGTCGGCAAATTCG 952920 32 100.0 34 GGCAAATTCG ................................ GTCAAACAGCGCGCCAATCATGGCGTGGTCACCC 952986 32 100.0 35 GTGGTCACCC ................................ TTTTCCGCGGCTTTTTCGGCGTTTGTTACCGCTGC 953053 32 100.0 34 TTACCGCTGC ................................ CCACGCGCTCTTAAATCCTCAACGACGGCTGAAT 953119 32 100.0 34 ACGGCTGAAT ................................ CTCTTTTGCATTGATGACAGGCGCCAGAATGACG 953185 32 100.0 34 CAGAATGACG ................................ CGCAATACTAAAAGGCTTTAGCGCCCAGGAAATC 953251 32 100.0 34 CCAGGAAATC ................................ AACTGCAAAACGCCCAGGAATCACGCAATGAAAG 953317 32 96.9 34 GCAATGAAAG .......................C........ TTCTACGCCTAAAAAACAAATGATTAAATTTATA 953383 32 100.0 34 TAAATTTATA ................................ ATCAACCAAATACTTGCCTTTATCAACAAAAAGC 953449 32 100.0 32 AACAAAAAGC ................................ TTGGGGGGGTATGGAGACATAACCATCATTGA 953513 32 100.0 34 CCATCATTGA ................................ AGATTTTCAACATCTCAGTTTATTTGCTGATTTT 953579 32 100.0 TGCTGATTTT ................................ GCCAATGCTTT ========== ====== ====== ====== ========== ================================ 14 32 34 GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [228,43] Score: 0.18/0.18 # # Final direction: R [0.55,5.14 Confidence: HIGH] >NC_006300 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 954864 32 100.0 36 TACATTCCAG ................................ GCCTCATAACTAATACCTGCCGGGTCGGCAAATTCG 954932 32 100.0 34 GGCAAATTCG ................................ GTCAAACAGCGCGCCAATCATGGCGTGGTCACCC 954998 32 100.0 35 GTGGTCACCC ................................ TTTTCCGCGGCTTTTTCGGCGTTTGTTACCGCTGC 955065 32 100.0 34 TTACCGCTGC ................................ GACTTGTAATAATGATTAATTACTGCTGAAGCAG 955131 32 100.0 34 GCTGAAGCAG ................................ TTGTAATAATTCATTTGATACGCGGATAATTTTT 955197 32 100.0 34 GATAATTTTT ................................ TTTAACATAATTGAGCCGTTACCCACACCATCAA 955263 32 100.0 33 ACACCATCAA ................................ GTAAACTGCTTAACAGTAGCATACACATTTGCA 955328 32 100.0 33 CACATTTGCA ................................ TTTTTTATTACCCAAAAATCAAACCCAATAGGA 955393 32 100.0 34 CCCAATAGGA ................................ GCCGGTACCTCCAGGCGCCCCAACAGACATCGAC 955459 32 100.0 33 AGACATCGAC ................................ TTAAAAGAGCAACGCGCCAAAAACTTTTTAACA 955524 32 100.0 34 CTTTTTAACA ................................ GACAAAAGCACAAGGGGTAATCCACTTTCAAAAG 955590 32 100.0 35 CTTTCAAAAG ................................ TTGGGCTTGTGCGTGTGGTCATGGGGTCAGTTGCA 955657 32 100.0 35 GTCAGTTGCA ................................ TTTCAGCGGACATTGCTTTCATCGAGTCCATACTA 955724 32 100.0 33 GTCCATACTA ................................ GCGATTGCGGGCTACAACCAAAAGACTTGACCA 955789 32 100.0 35 GACTTGACCA ................................ GTATGTTGATCGTAAAACTTGGATTGCTTATTGCC 955856 32 100.0 32 GCTTATTGCC ................................ ATTATCATGCAATTGATTTTGATAAAAAAACG 955920 32 100.0 34 TAAAAAAACG ................................ CATACGTTCGCCAGTCATTTTATGATGAACGGGG 955986 32 100.0 34 ATGAACGGGG ................................ ACGTGGGCGATATAAAAAACAATATTGCGATGTG 956052 32 100.0 35 TTGCGATGTG ................................ GCGAGGCGATAGAACATCTGATAAGGGTAACAAGC 956119 32 100.0 34 GGTAACAAGC ................................ AATCTCTTATTGTGTAGTATGTGTCCCAGATATC 956185 32 100.0 33 CCCAGATATC ................................ TATCTGCTCATGCCACTTATTGTATCTTTAGCA 956250 32 100.0 34 ATCTTTAGCA ................................ GGAAACAGACGATATCAATTCTGCGCACTTAGTT 956316 32 100.0 34 GCACTTAGTT ................................ GTAATAAAGAGGTGGTAGGTGGTAGTAGGGTTGT 956382 32 100.0 33 GTAGGGTTGT ................................ TGATGTAGATTTTTTCTTTTTCAGAATTTCGTG 956447 32 100.0 38 GAATTTCGTG ................................ ACAGACTAAACTGGAAATATTAAGCTTACCGATAACAA 956517 32 100.0 34 CCGATAACAA ................................ TATTACATGTTTAGTTTGTATGCTAATCAATATA 956583 32 100.0 35 AATCAATATA ................................ ATAAGTATATCTATATTCAAGCAGAACAAGCAGTA 956650 32 100.0 34 ACAAGCAGTA ................................ CAAGTAGTACTGATAAAAAAAGAAACATTTGAAA 956716 32 100.0 34 ACATTTGAAA ................................ TATGTTAGGGTTTGTTGGCGCCGAGAAAATCCGT 956782 32 100.0 33 GAAAATCCGT ................................ GACGAATGGACCTTAATTAATGGACAAGCAGGA 956847 32 100.0 33 ACAAGCAGGA ................................ AACATCGTATTAAATACGCGAGATTTATTTGAT 956912 32 100.0 34 TTTATTTGAT ................................ GTACTTTAATCTTTCATTTTCCGCCTGCCAAAAA 956978 32 100.0 CTGCCAAAAA ................................ AGCCTTAACT ========== ====== ====== ====== ========== ================================ 33 32 34 GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [75,186] Score: 0.18/0.18 # # Final direction: R [0.37,5.05 Confidence: HIGH] >NC_006322 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 815793 23 100.0 49 NNNNNNNNNN ..TC.A..G.....G.....TC. GACCGGAGCGACAGGCCCGACAGGAGCAACGGGAGCGACAGGCCCGACA 815865 23 100.0 49 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 815937 23 100.0 67 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACAGGAGCGACAGGCCCGACA 816027 23 100.0 85 NNNNNNNNNN .....A........G..C..... AACGGGAGCAACCGGCCCGACAGGCCCGACAGGAGCAACAGGGGCGACAGGCCCGACAGGAGCAACGGGAGCGACCGGCCCGACA 816135 23 100.0 76 NNNNNNNNNN .....A........G..C..CC. GACAGGAGCGACCGGAGCAACAGGAGCGACCGGAGCAACAGGAGCGACAGGAGCGACAGGAGCAACAGGAGCGACC 816234 23 100.0 58 NNNNNNNNNN .....A..G........C..CC. GACCGGCCCGACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 816315 23 100.0 58 NNNNNNNNNN .....A..G.....G..A..CC. GACAGGTCCAACGGGAGCCACCGGCCCGACGGGAGCAACGGGAGCGACCGGCCCGACA 816396 23 100.0 40 NNNNNNNNNN ........C........A..TC. AACAGGAGCGACAGGAGCGACCGGAGCAACAGGTCCAACA 816459 23 100.0 31 NNNNNNNNNN ........C........A..... GACAGGTCCGACGGGAGCGACCGGCCCGACA 816513 23 100.0 31 NNNNNNNNNN ..TC....C.............. GACAGGTCCGACCGGAGCAACGGGAGCGACA 816567 23 100.0 58 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACGGGAGCAACGGGAGCGACAGGTCCGACGGGAGCGACA 816648 23 100.0 40 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACAGGTCCAACAGGAGCGACA 816711 23 100.0 67 NNNNNNNNNN ....................... AACGGGAGCGACAGGTCCGACAGGAGCAACAGGAGCCACCGGCCCGACCGGAGCCACCGGAGCAACA 816801 23 100.0 49 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACGGGAGCGACAGGAGCAACGGGAGCGACC 816873 23 100.0 58 NNNNNNNNNN ..CC................... AACGGGAGCAACAGGTCCAACAGGAGCGACAGGAGCGACAGGAGCAACGGGAGCGACC 816954 23 100.0 40 NNNNNNNNNN ..CC....C.....C..C..... AACAGGAGCGACAGGAGCAACGGGAGCAACGGGAGCGACA 817017 23 100.0 31 NNNNNNNNNN ..TC.............A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817071 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817116 23 100.0 31 NNNNNNNNNN .................A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817170 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817215 23 100.0 22 NNNNNNNNNN ...........TC.G........ AACGGGAGCAACAGGTCCAACA 817260 23 100.0 40 NNNNNNNNNN ........C.............. CACCGGCCCGACCGGAGCCACCGGAGCAACAGGTCCAACA 817323 23 100.0 22 NNNNNNNNNN ........C.............. CACCGGCCCGACAGGAGCGACC 817368 23 100.0 22 NNNNNNNNNN .....C..C.............. GACAGGTCCGACAGGAGCAACA 817413 23 100.0 22 NNNNNNNNNN ....T.................. GACAGGTCCAACAGGAGCGACA 817458 23 100.0 22 NNNNNNNNNN ..............T........ AACAGGAGCCACCGGCCCGACC 817503 23 100.0 22 NNNNNNNNNN .....A..G.............. GACAGGTCCAACAGGAGCCACC 817548 23 100.0 31 NNNNNNNNNN .....A.....TC....A..... CACCGGTCCGACCGGTCCAACAGGAGCGACA 817602 23 100.0 22 NNNNNNNNNN .....A..C........A..... CATCGGCCCGACCGGAGCGACC 817647 23 100.0 31 NNNNNNNNNN ..CC.............A..... GACCGGCCCGACAGGAGCAACAGGAGCGACC 817701 23 100.0 1 NNNNNNNNNN ..CC.......TC....A..... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 31 23 40 GGAGCGACAGGAGCAACGGGAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [35-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [700,772] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_006347 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2924388 29 100.0 37 NNNNNNNNNN G.CCT........................ CAGTGCAGCACATCGTAATATCTTGCATTTTGCACAA 2924454 29 100.0 35 NNNNNNNNNN ............................. CAGCTCTTTTTCGTTTGCATCAAGTGCTCTCTTTT 2924518 29 100.0 35 NNNNNNNNNN ............................. ACCAGCGATTCACTCGACAAATTTCTCAAACCTTT 2924582 29 100.0 35 NNNNNNNNNN ............................. AATGAATAAGGATAAGAGAATACATTCTTTTACTA 2924646 29 100.0 35 NNNNNNNNNN ............................. ATTGCGCTTTCTGTGCGATATTGGCGAGGGTATAT 2924710 29 100.0 35 NNNNNNNNNN ............................. AGAGGCGTGCTTCTTCATTAAGCCTGTCTATATGA 2924774 29 100.0 35 NNNNNNNNNN ............................. ACAACAGGAACTTTGCCTGTACTGCTTGGAACGAA 2924838 29 100.0 36 NNNNNNNNNN ............................. ATCACACAGTATCACAAAGAACATAGTGATCAACCA 2924903 29 100.0 35 NNNNNNNNNN ............................. ACTAAAAATGTCATGGGTGGATGCTCGTTTAAATA 2924967 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 10 29 35 ATTTCAATTCCATAAGGTACAATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,214] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_006361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4459382 29 100.0 32 NNNNNNNNNN .C.GGAT.AT..C..C............. CTATCGCACAGCACCCATAGGTTGTTGTCGTC 4459443 29 100.0 32 NNNNNNNNNN ..A...........A.............. GGCGGGGGCGGGGGTGGCGGCGGCGGTACCGG 4459504 29 100.0 30 NNNNNNNNNN ..............A........AGCAC. GCTTCCCCGACGACGGCGGCGCCCGTTCGC 4459563 29 100.0 32 NNNNNNNNNN ..............A.............. TCGACCTGGCGGCGCTGGACCTCATCCCAGTA 4459624 29 100.0 32 NNNNNNNNNN C.............A.............. CTGGTCACCGCAGTCGCGCCGTTGATCCCGCT 4459685 29 100.0 32 NNNNNNNNNN ..............A.............. GGGCTGTCGCCGATGTCAGGGCCGTCAGCGGT 4459746 29 100.0 32 NNNNNNNNNN ............................. AAGACCGCGGCCACCCAGGGCAAGTTCATGCT 4459807 29 100.0 32 NNNNNNNNNN ..C.......................... CTACCGCCGAAACGATTCGATCCAAATAGATG 4459868 29 100.0 32 NNNNNNNNNN T............................ TCGGGTGGTTCATCTCGTTCGTCGCCGTCCCC 4459929 29 100.0 32 NNNNNNNNNN ............................. CTCGGCGGCGGGCTGATCGCGATGATCTTGTC 4459990 29 100.0 32 NNNNNNNNNN ............................. GCCTGGCTGGATGAGCAGCTGGGTCGGCAACG 4460051 29 100.0 32 NNNNNNNNNN ............................. TCGCCCATCACCGTCGCGAACCGGATCAAGAA 4460112 29 100.0 32 NNNNNNNNNN ...................T..A...... ACCGTGATGGTCGTAGCCGTCTCGGCGGCGCT 4460173 29 100.0 32 NNNNNNNNNN ............................. GGGCGCGGACCCGGCCCACGACCACCTCGTCG 4460234 29 100.0 32 NNNNNNNNNN ............................. GCGGAAGCGACCGCGGAATTTCCGACCTCAAG 4460295 29 100.0 32 NNNNNNNNNN ............................. GAGCTGGTGGAGGTGATGCGGGAACGGCTGCC 4460356 29 100.0 32 NNNNNNNNNN ............................. GGACGGCACAACGCAGCCAGGTTCGACAGCCG 4460417 29 100.0 32 NNNNNNNNNN ............................. AGCTGTCGGAGCCGAAGGTGTGCGAGGGCGGC 4460478 29 100.0 32 NNNNNNNNNN ............................. GAAGAATGGCTGAGCGAGCACGAGGTAGCCGA 4460539 29 100.0 32 NNNNNNNNNN C............................ TCGCGGGCCGATTCGTAGTACGACTAAATAGC 4460600 29 100.0 32 NNNNNNNNNN C.A.......................... GGGGAGCAGGCGCAGCAGTGCGGTTGGGCCGC 4460661 29 100.0 33 NNNNNNNNNN ............................. TTGGTGGTTCTCGGGAGTGCGCGTCACTGCCTC 4460723 29 100.0 32 NNNNNNNNNN ............................. CATGCGCTCGATCTGCTTGACGGACATTACAA 4460784 29 100.0 32 NNNNNNNNNN ............................. CGCACGGTGTACCGCCGCGCCTGAGTGGCTGG 4460845 29 100.0 32 NNNNNNNNNN ............................. TAGCGGATCATGTCCGACTCCTTTGGATAGAG 4460906 29 100.0 32 NNNNNNNNNN ............................. CCCACGGGAATGTCCTCGCCCTGCGGCAGCCT 4460967 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 27 29 31 GGGCTCATCCCCGCGTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [23-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [657,198] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_006369 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3243127 28 100.0 32 NNNNNNNNNN ............................ TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA 3243187 28 100.0 32 NNNNNNNNNN ............................ CGATGAATCAACTATCAATAGATGGCGTTTAC 3243247 28 100.0 32 NNNNNNNNNN ............................ AATAAACAAAATTTGGAGTTAAATGTGAATGA 3243307 28 100.0 32 NNNNNNNNNN ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 3243367 28 100.0 32 NNNNNNNNNN ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 3243427 28 100.0 32 NNNNNNNNNN ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 3243487 28 100.0 32 NNNNNNNNNN ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 3243547 28 100.0 32 NNNNNNNNNN ............................ TGAAAAAACATTACACAATGATTCTACTATAC 3243607 28 100.0 32 NNNNNNNNNN ............................ ATTACACATATGACACTTAATCATTATCAATC 3243667 28 100.0 32 NNNNNNNNNN ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 3243727 28 100.0 32 NNNNNNNNNN ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 3243787 28 100.0 32 NNNNNNNNNN ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 3243847 28 100.0 32 NNNNNNNNNN ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 3243907 28 100.0 32 NNNNNNNNNN ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 3243967 28 100.0 32 NNNNNNNNNN ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 3244027 28 100.0 33 NNNNNNNNNN ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 3244088 28 100.0 32 NNNNNNNNNN ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 3244148 28 100.0 32 NNNNNNNNNN ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 3244208 28 100.0 32 NNNNNNNNNN ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 3244268 28 100.0 32 NNNNNNNNNN ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 3244328 28 100.0 32 NNNNNNNNNN ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 3244388 28 100.0 32 NNNNNNNNNN ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 3244448 28 100.0 32 NNNNNNNNNN ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 3244508 28 100.0 32 NNNNNNNNNN ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 3244568 28 100.0 32 NNNNNNNNNN ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 3244628 28 100.0 32 NNNNNNNNNN ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 3244688 28 100.0 32 NNNNNNNNNN ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 3244748 28 100.0 32 NNNNNNNNNN ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 3244808 28 100.0 32 NNNNNNNNNN ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 3244868 28 100.0 32 NNNNNNNNNN ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 3244928 28 100.0 32 NNNNNNNNNN ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 3244988 28 100.0 32 NNNNNNNNNN ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 3245048 28 100.0 32 NNNNNNNNNN ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 3245108 28 100.0 32 NNNNNNNNNN ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 3245168 28 100.0 32 NNNNNNNNNN ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 3245228 28 100.0 32 NNNNNNNNNN ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 3245288 28 100.0 32 NNNNNNNNNN ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 3245348 28 100.0 32 NNNNNNNNNN ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 3245408 28 100.0 32 NNNNNNNNNN ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 3245468 28 100.0 32 NNNNNNNNNN ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 3245528 28 100.0 32 NNNNNNNNNN ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 3245588 28 100.0 32 NNNNNNNNNN ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 3245648 28 100.0 32 NNNNNNNNNN ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 3245708 28 100.0 33 NNNNNNNNNN ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 3245769 28 100.0 32 NNNNNNNNNN ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 3245829 28 100.0 32 NNNNNNNNNN ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 3245889 28 100.0 32 NNNNNNNNNN ............................ TAATGCAATTATCATGAATAATACTATGCACT 3245949 28 100.0 32 NNNNNNNNNN ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 3246009 28 100.0 32 NNNNNNNNNN ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 3246069 28 100.0 32 NNNNNNNNNN ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 3246129 28 100.0 32 NNNNNNNNNN ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 3246189 28 100.0 32 NNNNNNNNNN ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 3246249 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 53 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [233,1427] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_006369 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3246643 28 100.0 32 CGCCAGCTAA ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 3246703 28 100.0 32 CTGAAAGTTG ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 3246763 28 100.0 32 TCTTTTGTGC ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 3246823 28 100.0 33 CCATTAATTC ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 3246884 28 100.0 32 TGCCCACAAA ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 3246944 28 100.0 32 ATTGTGACCC ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 3247004 28 100.0 32 CAAGACGACA ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 3247064 28 100.0 32 TAGACAAAAT ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 3247124 28 100.0 32 AAAACAGCCT ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 3247184 28 100.0 32 GAAATGATGA ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 3247244 28 100.0 32 CTCCAGACCA ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 3247304 28 100.0 33 AGTTAATCTA ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 3247365 28 96.4 TCGCCCCAGT ...........................G TTATTATGTT ========== ====== ====== ====== ========== ============================ 13 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [3749,311] Score: 0.18/0.18 # # Final direction: F [1.83,0 Confidence: HIGH] >NC_006361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4584019 29 93.1 31 AAAGAGCTAT -......................C..... TCCGCGAGGTCGAACCGGCCGCTGAACACCG 4584079 29 96.6 32 CTGAACACCG .....................T....... AAAGGCCACTACTTCGTCGGCGACCGGATCGG 4584140 29 100.0 32 ACCGGATCGG ............................. CAGCGGAGAAAGATGCCCCCGCCGCGTTGCAG 4584201 29 100.0 32 CGCGTTGCAG ............................. ACAGGGAGCGGACCGCTGCAGAGCTGCGGAAA 4584262 29 100.0 32 GCTGCGGAAA ............................. GCTGGTGATGAACGGCGGGATGGCCACGGCGA 4584323 29 100.0 32 GCCACGGCGA ............................. ACCACGATCCCCTGTGCCTGCCTACGCGCCTG 4584384 29 100.0 32 TACGCGCCTG ............................. CTCGCTCGTAGTACCCACCCACCCCCTGAGCC 4584445 29 100.0 32 CCCCTGAGCC ............................. GCGCCCTGCCCGCGCCTGGTTCCACGCCAGCA 4584506 29 100.0 CACGCCAGCA ............................. ACTTCCTGAC ========== ====== ====== ====== ========== ============================= 9 29 31 GGGCTCATCCCCGCACGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [106,45] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_006361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 5289653 26 100.0 35 CAGGAAGTAC .......................... ACCTGCGGATCGACGTGCTGGGCATACCAGATAAC 5289714 26 100.0 35 ACCAGATAAC .......................... CTCCCGGTGCGGTCGCGGATCTCGGCCACAATGAC 5289775 26 100.0 35 CCACAATGAC .......................... CGGATCACCTTCGGCTCTTCGGTCATGATCCACAC 5289836 26 100.0 35 TGATCCACAC .......................... CGAGGAGGAGGGCGCCGGTGAATAACTGGGAATAT 5289897 26 100.0 35 CTGGGAATAT .......................... CCTGGTACCACGGCGGCTACCCCGGATTGGCCCAT 5289958 26 100.0 35 ATTGGCCCAT .......................... CCCGTGGTCGATCGCGTACTGCAACACCCGCCAGT 5290019 26 100.0 35 ACCCGCCAGT .......................... CCCGATCAGGCCGAGCAGGCTCGCCGCGAGCAGGT 5290080 26 100.0 35 GCGAGCAGGT .......................... CGCCGACCCGACCTGCGCCCAGTCCGGGGCGTCGT 5290141 26 100.0 35 GGGGCGTCGT .......................... TCACCCCGGCGACCCCCGCAGCGACGCCCTCGGGT 5290202 26 100.0 35 GCCCTCGGGT .......................... CACGGCAATACGGCATTGCGGTATTGCTGATTTGT 5290263 26 96.2 35 GCTGATTTGT ............T............. TGACTGTTCAGCGATCAGGATGTGGAACCGATGGT 5290324 26 96.2 AACCGATGGT ............T............. TTGGCTCTCG ========== ====== ====== ====== ========== ========================== 12 26 35 GCTCCCCGCGCACGCGGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [281,161] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_006368 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 190034 37 100.0 34 NNNNNNNNNN ..................................... TAGATATAAAAAGATTAAATCTTCTAGCGCACAT 190105 37 100.0 34 NNNNNNNNNN ..................................... TCACTACTCCTGAAGGTTATAATTTTTGCTATAA 190176 37 100.0 36 NNNNNNNNNN ..................................... TTCGAATACAATCCTAGTGTCTCTGTGTGAATTAAG 190249 37 100.0 34 NNNNNNNNNN ..................................... CAGGCACTGGTTCACTAGACACTGTAACATCTAT 190320 37 100.0 35 NNNNNNNNNN ..................................... CAATAACAAGCGAGCCTTTTGTACTAGAAGGTTTA 190392 37 100.0 34 NNNNNNNNNN ..................................... CTACCAGTTAATCGTAACTCAATCTCTTTTTCAA 190463 37 100.0 34 NNNNNNNNNN ..................................... ATAGAATACATAAGTGCAAATTATTAAATGTTAC 190534 37 100.0 34 NNNNNNNNNN ..................................... TGAATGTAGAAACCAGATGCCACGAATTATTAGA 190605 37 100.0 35 NNNNNNNNNN ..................................... TTTGTATAAACGTTCTGATATGACTTAGGTAATCT 190677 37 100.0 34 NNNNNNNNNN ..................................... CTAACCTGATTGCTCAACAAATAATGCTATTGGC 190748 37 100.0 34 NNNNNNNNNN ..................................... TCACTTTAGGCCAACGCCGATCCTCCGCTTCGAA 190819 37 100.0 34 NNNNNNNNNN ..................................... TGACGCAAAGGATTTATTAAAAACGCCTTGTAAT 190890 37 100.0 31 NNNNNNNNNN ..................................... ATTTTACCTTTTAACACATATTGATAGGCGT 190958 37 100.0 36 NNNNNNNNNN ..................................... TCCATAACTGAAACGTCCTTATGCCTCAACATAATG 191031 37 100.0 34 NNNNNNNNNN ..................................... GAATTTGTCGGCCGCATAGACCGCTTTTATCAAA 191102 37 100.0 36 NNNNNNNNNN ..................................... CTATTGCAAGCTAGTTTGATCGTGTTATTATAAGAA 191175 37 100.0 36 NNNNNNNNNN ..................................... TGACAAACGTTTGTTTTTTAGACACAACACTAAAAG 191248 37 100.0 35 NNNNNNNNNN ..................................... CCTGAAAACCCGCCACAACCCGCGCCAGACTTGAA 191320 37 100.0 34 NNNNNNNNNN ..................................... ACCAAGTCGAAACAACATACCGAGACCGTGTTGA 191391 37 100.0 35 NNNNNNNNNN ..................................... TACATTGTTACGTTCATTTCACTCAGTTTTTCATA 191463 37 100.0 34 NNNNNNNNNN ..................................... AGCAATAACCCAAAGTTTCGCGCGCGTGCGCGGG 191534 37 100.0 37 NNNNNNNNNN ..................................... TTATAACATCGGGATGGCGGTTTATTGGTTAAGTAAC 191608 37 100.0 34 NNNNNNNNNN ..................................... TTCTTTTTTCAGATTTCATTTCCTTTTCCTTGTG 191679 37 100.0 35 NNNNNNNNNN ..................................... AATCTTAATTTATGCGCCTTACCTTCTGCTTCATC 191751 37 100.0 36 NNNNNNNNNN ..................................... TATACTTAGACAATATCATCATTTCCTATGTTTCGA 191824 37 100.0 36 NNNNNNNNNN ..................................... GCTATTCCAGATAGGTAGTTGTTTAGAGCATTTTGT 191897 37 100.0 35 NNNNNNNNNN ..................................... TTCGATACTCCTTAGCGGTACTTGCTAAAGTAGTT 191969 37 100.0 35 NNNNNNNNNN ..................................... AAATAATTCTTGTGACTCACGTGCCGCCATTTGAA 192041 37 100.0 36 NNNNNNNNNN ..................................... TAGGAATTGATTGGGGTAACGCCATCGCCATAGAAG 192114 37 100.0 33 NNNNNNNNNN ..................................... TTACTTCATGACCCGGACATTTTACTAAAAAAT 192184 37 100.0 34 NNNNNNNNNN T.................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTC 192255 37 100.0 36 NNNNNNNNNN ..................................... CATAATTGGGAATTGGTGTGAAATGCTCACCGTCCG 192328 37 100.0 38 NNNNNNNNNN ..................................... TTAATTGCGCCAGAAACAGCACCATTTATGGTTACAGC 192403 37 100.0 1 NNNNNNNNNN .......................TT...T.A.....T NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 34 37 34 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [217,780] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_006391 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 20071 26 100.0 42 CTAGCACTCG .......................... AAACCCGCCAAGCACTCCGATACCGGGGATGCCTCCCCAACT 20139 26 100.0 40 CTCCCCAACT .......................... AAACGGCCGGCGCGTCGACGACGTCCTCTAGGAGGCTGAC 20205 26 100.0 39 GGAGGCTGAC .......................... TAACTACGCCGTGAGTTGGGCATCGGCGAAGCCCACAGT 20270 26 96.2 40 AGCCCACAGT .............G............ TAACCCGTGTGGTGGGACGGCGGTGTATGCAACGGACTAC 20336 26 92.3 40 AACGGACTAC .............G....C....... TAACTTCGACCAGGGATGGACCGACGAGCGCATCATGGAG 20402 26 96.2 40 CATCATGGAG .............G............ TAACTTGGCCGTGAGCCAATCCCAGTCATCCGTGTTAATC 20468 26 96.2 39 CGTGTTAATC .............G............ TAACTGGCATGGCAGGGATTCATCAATACCGGCTTTGTT 20533 26 96.2 41 CGGCTTTGTT .............G............ TAACTTGCTATCCGAGGGACGATGAGATGGCACGAGACCAT 20600 26 96.2 41 ACGAGACCAT .............G............ TAACTTGCTATCCGAGGGACGATGAGATGGCACGAGACCAT 20667 26 96.2 38 ACGAGACCAT .............G............ TAACCATCGCTGACGACGACTTCGATATCGGTGATTTG 20731 26 96.2 39 CGGTGATTTG .............G............ TAACTCCCAGTGTTCGCCGCGACTAACTGCTATCATGCC 20796 26 96.2 40 CTATCATGCC .............G............ TAACTTTCGCGGAGAACGCCGAAGGGAATCTCTTAGTCGA 20862 26 92.3 41 TCTTAGTCGA .............G....C....... TAACCAGCGCCGGGTTTGCGGTATGCTGATTGTTGCATGAG 20929 26 96.2 40 GTTGCATGAG .............G............ TAACCGGCATCGGCGAGCGCAAAGCCTACGCCGTGTGGTC 20995 26 96.2 39 CCGTGTGGTC .............G............ TAACCCAACGCTTGTCCGCCAACGGCGAACAGCCGGACG 21060 26 100.0 38 CAGCCGGACG .......................... AAACTCGGCGTGTTGTTCTCGGTATCGAGCGTCAGCTC 21124 26 100.0 41 GCGTCAGCTC .......................... AAACCATTGAACAGATGAATCAGGCCTGTGCTGACATGGTT 21191 26 100.0 41 TGACATGGTT .......................... AAACACGCTACGCTCGTGACTACATGGCGGAGTGCATGGAC 21258 26 100.0 40 GTGCATGGAC .......................... AAACCACTAAAGGAGGGCTGCGTAACCGCAGCCGCCCCCC 21324 26 100.0 40 GCCGCCCCCC .......................... AAACGATTTCTTTCAGCGCGTTCGTCTCGCTCGGATAGAC 21390 26 100.0 41 TCGGATAGAC .......................... AAACCGGCTGACTCCGGTGTGAGCGTGCACGCCCAGCCATC 21457 26 100.0 39 CCCAGCCATC .......................... AAACTGGATATCGTCAATCTGCGTTTCAAGGACTGGCTT 21522 26 100.0 39 GGACTGGCTT .......................... AAACCGATTTTTCACTGAGGGCAGCGAAGAGGTGATCGA 21587 26 100.0 40 AGGTGATCGA .......................... AAACCAAACCCTCCGACGCTGATGGTCGGCGCTTCTGCGG 21653 26 100.0 38 GCTTCTGCGG .......................... AAACCGGCAGCCATGAGGACAGCAGCCAGGAGACCAGC 21717 26 100.0 41 GGAGACCAGC .......................... AAACCGACAACGGCGAAGACTCGGACAACAATGAGTAAGAA 21784 26 100.0 40 TGAGTAAGAA .......................... AAACGGAGACGGACGCCACCGACACGGAGTCCGAGACGGA 21850 26 100.0 40 CCGAGACGGA .......................... AAACACCTGACATTGACTTCATCAAAGTCAACATCCACGG 21916 26 100.0 39 ACATCCACGG .......................... AAACTCGCGACGCTCGGACGGTGGTCGTGCATGAGTGAC 21981 26 100.0 40 CATGAGTGAC .......................... AAACCGTTCCTAATCGACATTGCCTGATGCAATTGTTCTT 22047 26 100.0 41 AATTGTTCTT .......................... AAACACATAGACACAGAGACGATAAATAATGCAGTGCGAGA 22114 26 100.0 39 CAGTGCGAGA .......................... AAACGAGGGGTTGTATGATGCAAATATCCGGGCCAAGGA 22179 26 100.0 39 GGGCCAAGGA .......................... AAACTGGCGTGACGACGAAGATAAAGACGTGTCTGGGAT 22244 26 100.0 40 TGTCTGGGAT .......................... AAACGGACGCCGACGTAGTGCTGCACCACATTGCTGAGGG 22310 26 100.0 40 TTGCTGAGGG .......................... AAACCGAACTCGAAATCTATCCGGAGTCCGATCAACGAGA 22376 26 100.0 41 ATCAACGAGA .......................... AAACGACCCGATGGCACAGTCACAGGCAGAGTGATATGCTG 22443 26 100.0 41 TGATATGCTG .......................... AAACTAGTGGACTGCCCGAGCCCGAGACATACAACGACTTA 22510 26 100.0 38 CAACGACTTA .......................... AAACCATCGGGTTGCACAACAGCAGGGTCAGAGGCTCT 22574 26 100.0 39 CAGAGGCTCT .......................... AAACTAGTCTTGATAGTGGGGCAACGTGCTCACGCATTT 22639 26 100.0 39 TCACGCATTT .......................... AAACACCGAGTTGATAGTTGACCCTCGATTGTCCAGTAC 22704 26 100.0 40 TGTCCAGTAC .......................... AAACGGATTTCGCGGCAGGAGTGTCTTTTACCTTATTATC 22770 26 100.0 38 CCTTATTATC .......................... AAACCGGCGATGCGGCGGTGGGCGTCCTGCCACATCCT 22834 26 100.0 41 GCCACATCCT .......................... AAACGATGGACAAAATCAAGCAGATTCGAGAAGCAAAGGCA 22901 26 100.0 40 AGCAAAGGCA .......................... AAACGACGCTGACTGTGCGACCAAAGTCCGACAGCTTCTC 22967 26 100.0 41 ACAGCTTCTC .......................... AAACCCACTACCTGTAACGGACATAAAGTAACTGTCAACCC 23034 26 100.0 38 CTGTCAACCC .......................... AAACCCGCCAACCAACTATGAGCCGACACGACCTCACA 23098 26 100.0 41 CGACCTCACA .......................... AAACCTTGAGCACGACCTTGTCGATGTTCCACCGGTTCCAC 23165 26 100.0 CCGGTTCCAC .......................... AAACCATGCCGGA ========== ====== ====== ====== ========== ========================== 48 26 39 GCTTCAACCCCACAAGGGTCCGTCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [8,600] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_006392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 46654 30 100.0 38 NNNNNNNNNN .............................. GTGGCACCGGTTGAGTCGCTGACCGCCGGCGCGTACGC 46722 30 100.0 35 NNNNNNNNNN .............................. CTGTAGGCCGCCAGCACGAGCACGGCCCAGAGCGG 46787 30 100.0 36 NNNNNNNNNN .............................. AGACCCTCCCCTCGTGGATGCACTCGGCACAGTAGC 46853 30 100.0 36 NNNNNNNNNN .............................. CGGCTCTGAGTATGAGGGAGTCCTGTTCAGCCAAGA 46919 30 100.0 37 NNNNNNNNNN .............................. GTGGTGAAGTCGCCCGCAGCGTATTCGAGCTTGTCCT 46986 30 100.0 36 NNNNNNNNNN .............................. CTGCGGCGGCTGTTTGAGTTGTACCTTTCGCTGGTC 47052 30 100.0 36 NNNNNNNNNN .............................. GACTGCCGGAACCAGAATACCGGCACAAAGTACGAG 47118 30 100.0 35 NNNNNNNNNN .............................. ATCGACTGCCCGAGAGACCCATGATTGCGAATAGT 47183 30 100.0 37 NNNNNNNNNN .............................. GCCGCAACGAAGCCCGGCAGGAACTGGGGCGTGACGA 47250 30 100.0 36 NNNNNNNNNN .............................. TCGAAGAGCGCGATCGGGGCGAGAGGTTTGACGTGC 47316 30 100.0 37 NNNNNNNNNN .............................. GCGTTGGTCGAGTTTGACCGTGCCGTAGATTGTCGCG 47383 30 100.0 35 NNNNNNNNNN .............................. TCCGAGACGATGCACGCGCTTGCCCAGCAGTTGTG 47448 30 100.0 36 NNNNNNNNNN .............................. GACCCACAGGAAACACTTTTCGCCTCACCAACTCTG 47514 30 100.0 36 NNNNNNNNNN .............................. AACCCACTCACGGCGGCGAAGGACGCGCTGACGATC 47580 30 100.0 36 NNNNNNNNNN .............................. GGCCGGCACGGCGTCACGCGAGAGATGTGTCCTTGC 47646 30 100.0 35 NNNNNNNNNN .............................. GGATCACGGTACAGATGCGGCGACAACTACGCGAA 47711 30 100.0 37 NNNNNNNNNN .............................. GGAAACATCTACGCGCGCACCAGCCTGCTCGGAAACT 47778 30 100.0 37 NNNNNNNNNN .............................. TGGTACTCCTCGCGCGTGGTGGGGTACGAGGCCGTCG 47845 30 100.0 36 NNNNNNNNNN .............................. CCCGACGGCGGCGACGGTATCCCGGAGGACAAGACC 47911 30 100.0 36 NNNNNNNNNN .............................. TGCCATATCCACGAGCCCTTTGACATCGCCGTCCTG 47977 30 100.0 35 NNNNNNNNNN .............................. GAGCAAGACGAGTGGCTCCAGTTCCCGACCGCCGC 48042 30 100.0 37 NNNNNNNNNN .............................. AAACAGCGCGAGGATATTGTTCAGGCCGTCGAACAGG 48109 30 100.0 36 NNNNNNNNNN .............................. TTCGACCGCTTCGGCGGCTGGGAATGGTCGTCGACT 48175 30 100.0 35 NNNNNNNNNN .............................. CTGATATGTACTGCTAAGAGGTCATCTCGGATACC 48240 30 100.0 37 NNNNNNNNNN .............................. GTACTCGTCACACCACGGGCACACGCCGTCGTCAATC 48307 30 100.0 36 NNNNNNNNNN .............................. CAGTGGGACGTGTTCGGCCATGCCGTAGATAGACAG 48373 30 100.0 36 NNNNNNNNNN .............................. TCTACTACCCTATCGACGACGCCGAAATTTCGCCCA 48439 30 100.0 35 NNNNNNNNNN .............................. TGGACGGCCTCCGCACTGTCCTCACCATCGTCCTC 48504 30 100.0 35 NNNNNNNNNN .............................. TTGATTGAACTATCCACGTCGCGTTTGTGTGCCTC 48569 30 100.0 34 NNNNNNNNNN .............................. ATGAGGTTGTTTGGGACACTGCTATTCGGCCGCG 48633 30 100.0 36 NNNNNNNNNN .............................. ATCGCCACACTCCCCAGCGCGGTCAGCAGCCCGACG 48699 30 100.0 36 NNNNNNNNNN .............................. AACGACCGGTACATGATTGAGTGGCGCGAGGGTCCG 48765 30 100.0 34 NNNNNNNNNN .............................. GACGGCGTCGACTGTGGGTCACTGTTACCGTCGC 48829 30 100.0 37 NNNNNNNNNN .............................. ATCCGCAGTGGGCCCGATGACATCTACGTGTATCCGG 48896 30 100.0 37 NNNNNNNNNN .............................. AAGAACGATATGGGTGTTAGGTCGCACCATTCGCAGA 48963 30 100.0 36 NNNNNNNNNN .............................. GACTACGTCTACCCCGAGGAGGAGGTGCGCGACTGG 49029 30 100.0 35 NNNNNNNNNN .............................. ACCATAGTACCATCATGGCACTCTGGACTTATAGT 49094 30 100.0 38 NNNNNNNNNN .............................. CTGGAGCGCATCGTAGTGCACGCCGCGGTCGTTCGCTC 49162 30 100.0 35 NNNNNNNNNN .............................. TCGACACCATCAACGGGTTGCTCGGCGACGGGACG 49227 30 100.0 36 NNNNNNNNNN .............................. CCCGCCCACTTGTTGCTCATGTAGACCTTTCCTGAC 49293 30 100.0 35 NNNNNNNNNN .............................. ACACTCTCGCACTCGATCCCGGACCTGCTGGGATC 49358 30 100.0 36 NNNNNNNNNN .............................. CCGTCGAAGGACCGCCTTGGGTGGTGTACTCGGCGG 49424 30 100.0 35 NNNNNNNNNN .............................. TTGCGGACCCGGCGGCGATGGACGACGATGTCGGC 49489 30 100.0 37 NNNNNNNNNN .............................. CATTAGCGAGATTAGCGGTATGGGTTCCATCATCCCA 49556 30 100.0 38 NNNNNNNNNN .............................. GAGGACAGCGTCTTTGTGGTCCGCCAGTTTGGACGGGT 49624 30 100.0 37 NNNNNNNNNN .............................. TGGACGAGCGCCCAGCCGTCCTTGTTGCTACGGAATA 49691 30 100.0 35 NNNNNNNNNN .............................. GAATTTGTTGACGACCCACGGGAGACCGACGATGC 49756 30 100.0 35 NNNNNNNNNN .............................. CACTTGCTCAATCAGGGACTGCGTTGGTATGGCCT 49821 30 100.0 36 NNNNNNNNNN .............................. AGCACATAGTCGATGCTCGGGTCGTGCCAGTGGCCG 49887 30 100.0 36 NNNNNNNNNN .............................. GTCGCCGACGACGACCCGTTCGTCCTTCCCGAAAGC 49953 30 100.0 34 NNNNNNNNNN .............................. ACCGCTATAACAATGAACATCCAATACTACGTTA 50017 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 52 30 35 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [106,16] Score: 0.18/0.18 # # Final direction: F [1.32,0 Confidence: HIGH] >NC_006371 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2187866 28 100.0 32 NNNNNNNNNN .C.......................... GGTGTTTTTCATAATGGCGGTGGAATACCAGA 2187926 28 100.0 32 NNNNNNNNNN ............................ TCGCTCTTTCCGTGGGTTGGGTAATGGTGATT 2187986 28 100.0 32 NNNNNNNNNN ............................ GCGATCCAGAAACAGAGTTGCAATCATCTGAA 2188046 28 100.0 32 NNNNNNNNNN ............................ CACATGAGCAACCAAGTCGGCGGTCAGATTCA 2188106 28 100.0 32 NNNNNNNNNN ............................ AAATAGTTACCAAGGTGAATGAAATCATTGCA 2188166 28 100.0 32 NNNNNNNNNN ............................ TTGAATATAGTCCGAAGTGGCTGTGTGTTTCA 2188226 28 100.0 32 NNNNNNNNNN ............................ AACTAGTTAGGGCTTGGTTGCGGTATTCAGTA 2188286 28 100.0 32 NNNNNNNNNN ............................ ATCAGAGATGATCGCACCGGTAACAAGAGATA 2188346 28 100.0 32 NNNNNNNNNN ............................ TCCCTCGCAATCTTAATACAGCAGTTCGAACA 2188406 28 100.0 32 NNNNNNNNNN ............................ TCTTAAATCAAATTGTTCGGGTTTCGTTTACT 2188466 28 100.0 33 NNNNNNNNNN ............................ ATCAATTGAAATCGATTCGACTTCTTACCTTAT 2188527 28 100.0 32 NNNNNNNNNN ............................ GTGCAGACGTAGCACCAGCATGCGCTACTTAT 2188587 28 100.0 32 NNNNNNNNNN ............................ TAGTCGCGCATGATTGCGGTGACTGATTCTCA 2188647 28 100.0 32 NNNNNNNNNN ............................ GTGTGAAGTAAGCAGCTTGTTCAGGACTAATA 2188707 28 100.0 32 NNNNNNNNNN ............................ GCCACCTGCAAACCCCGCCCCCCCGGCTAGAA 2188767 28 100.0 32 NNNNNNNNNN ............................ GTTCCTGATTATGGTGAGCGCGCCTTTATTGA 2188827 28 100.0 32 NNNNNNNNNN ............................ CTCGAGCTCAATGTGAAGCGGGTCTTACTGTT 2188887 28 100.0 32 NNNNNNNNNN ...........................G AAATTCACGTGCTTATGAACAACGGCAAAAAA 2188947 28 100.0 32 NNNNNNNNNN ............................ AATGCTATACACTCTCTTTGGCTTTTTCTACA 2189007 28 100.0 32 NNNNNNNNNN ............................ AATGATATAAATTGATATAGCCCGTTGTTACA 2189067 28 100.0 32 NNNNNNNNNN ............................ GTCATTTGCTGCGGTTATGCAGTCCCTCATAA 2189127 28 100.0 32 NNNNNNNNNN ............................ AACCCCGCAGTGGTACTTTTAATCTCAGATAA 2189187 28 100.0 32 NNNNNNNNNN ............................ TTGTAGCCGATACTGATCCCTGCCATATAAAA 2189247 28 100.0 32 NNNNNNNNNN ............................ CTTGAATGATGCCATGTTCATACCTGGCGTAA 2189307 28 100.0 32 NNNNNNNNNN ............................ GCCAGTTCTACGCCTTCACGTACCGCATCAAA 2189367 28 100.0 32 NNNNNNNNNN ............................ ACGAACGCGTGGTTGATGAATCGTTTGATTTT 2189427 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 27 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [202,131] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_006392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1032 32 100.0 34 GACAAATATG ................................ CGCCCACTTGTTGCTCATGTAGACCTTTCCTGAC 1098 32 100.0 34 CTTTCCTGAC ................................ GTCCCCTCAAAGTCCAGTCCTTGCACACGACGGA 1164 32 96.9 33 ACACGACGGA ..............................T. CCACACGTTGTGGTTGTGGCCGTGGACATACAG 1229 32 93.8 GGACATACAG ..............................TG GCGGGACC ========== ====== ====== ====== ========== ================================ 4 32 33 GTTACAGACGGACCCTCGTGGGGTTGAAGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [57,225] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_006392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 35013 30 100.0 37 ATCGGGCATG .............................. CTGTTCGGTGTCTTCGTGGGCGCGTGCGTCGGGATCG 35080 30 100.0 35 GTCGGGATCG .............................. AAATCCTTCGCCGCACTCTTTGCATAGATGCACTC 35145 30 100.0 35 AGATGCACTC .............................. GAGGGAGACGCCGACGACCAGGAGGCTATCCTGCC 35210 30 100.0 37 CTATCCTGCC .............................. CGAGCTCTTGCATGGTCAGAACAGAAAGTCGCGAACG 35277 30 100.0 37 GTCGCGAACG .............................. GACCCCCGCACTTTCGCAAGGGGCCGCTTAGTGTAAG 35344 30 100.0 39 TTAGTGTAAG .............................. TCAGACAGGAGTACCTCGCCGAGTTCCTCGACGACACGG 35413 30 100.0 37 GACGACACGG .............................. CGCGGGTCTGGCTCGATGGCGACGACATCGACATCAT 35480 30 100.0 37 TCGACATCAT .............................. AGTCGGAATGTGCGTCTTGCTCCCGTCGTCGTTGATG 35547 30 100.0 36 GTCGTTGATG .............................. GGCCAAGACCTCGCGGCGGAACTCACACAGTACGTC 35613 30 100.0 37 ACAGTACGTC .............................. GAAGTCCACCGTATCACTGGACCGCGAAGTTCGGAAA 35680 30 100.0 34 AGTTCGGAAA .............................. CGACTGAAAGAGTTGTGCGTGTCGAATCATGAGC 35744 30 100.0 37 AATCATGAGC .............................. CCCCGCCGGTACTGCGGGGGCTCCAGCGAGTCGTCTA 35811 30 100.0 37 GAGTCGTCTA .............................. CCCCGCCGGTACTGCGGGGGCTCCAGCGAGTCGTCTA 35878 30 100.0 37 GAGTCGTCTA .............................. GGCCCACCGAGTGCTTGTGACCAGCTGCGGCCACCGC 35945 30 100.0 36 CGGCCACCGC .............................. CATGCACGACGGCGACGTGTCGGTGCTCAACTGCCT 36011 30 100.0 36 TCAACTGCCT .............................. GCCAACACTAGTCACGTCAACAACAGTCCCAAACTG 36077 30 100.0 37 TCCCAAACTG .............................. CGACTGTCCACGGTATCGTTTATCCGCGCGTCAACGA 36144 30 100.0 38 GCGTCAACGA .............................. GATAGTCACATCAACACTGGTTGTGCCGTTATTGGTTA 36212 30 100.0 36 TTATTGGTTA .............................. CTGCCGTTGAAGGTCACTCGTATGTCGTCCACCAGA 36278 30 100.0 36 GTCCACCAGA .............................. CCGGTCGACCTGATTTACAACGTGACTGGCCACGAG 36344 30 100.0 35 TGGCCACGAG .............................. AGCCAAGCCATCAGGGGATCGTCCGCCGAACCCGT 36409 30 100.0 33 CCGAACCCGT .............................. CCGACGAACGGCCCGATTTGGCCGATCTCCCTG 36472 30 100.0 34 GATCTCCCTG .............................. ATCATCTGGGGGCCGGAAGTGTGGCTGACCGGCG 36536 30 96.7 CTGACCGGCG .............................C GACATCCTC ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTCAGACGGACCCTTGGGCGGTTGAAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [365,738] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_006448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 629901 36 100.0 30 ATCATTTGAG .................................... GAGCTACCAGCTACCCCGTATGTCAGAGAG 629967 36 100.0 30 TGTCAGAGAG .................................... CGTTCCTTTTTTCAAGGTAATCTTTGAAAG 630033 36 100.0 30 TCTTTGAAAG .................................... AAGTCCGTAAGCACCAGTTCCAATCGTCAT 630099 36 100.0 30 CAATCGTCAT .................................... TTGAATACCAATGCCAGCTTCTTTTAAGGC 630165 36 100.0 30 CTTTTAAGGC .................................... AACCTCATACATGGGGAAAATTGGTAAGTA 630231 36 100.0 30 TTGGTAAGTA .................................... TAACTTCATTAGTGTAGTTGTAATTAGCAT 630297 36 100.0 30 TAATTAGCAT .................................... TTAGCTACCCAAATATCTTCTGTTTTCCAA 630363 36 100.0 30 TGTTTTCCAA .................................... GAGTTTTCAATATTGGCACAGGAGACAATT 630429 36 100.0 30 GGAGACAATT .................................... TGATACTATTTTAGTCAGATATGAAATATC 630495 36 100.0 31 ATGAAATATC .................................... TCATCAATGTTTAAAGCCCAACAATACATGA 630562 36 100.0 30 CAATACATGA .................................... TAGATTTAATCAGTAATGAGTTAGGCATAA 630628 36 100.0 30 TTAGGCATAA .................................... AGGAAAATAGCATGAGCGTACAACAATCTA 630694 36 100.0 30 CAACAATCTA .................................... TGTCTATCACGCTTCCTAAGTGCATGAAAA 630760 36 100.0 30 TGCATGAAAA .................................... ATGTCACCAATCACTAAAGAACCTACGCTG 630826 36 100.0 30 ACCTACGCTG .................................... AACATCTTCCTCTCCGATTGCAAATAGTGC 630892 36 100.0 29 CAAATAGTGC .................................... CATATTTGGTGCCCGTTCGATAAAGAGTA 630957 36 100.0 30 ATAAAGAGTA .................................... CATTAAATCGCTTGAAGCAGACATTGAAGC 631023 36 100.0 30 ACATTGAAGC .................................... GACTTATCTTGGAAGGTAGTGAAGGCACTT 631089 36 100.0 30 GAAGGCACTT .................................... TCCTTGCCATCTGCACTGTAAGCCCAAGCA 631155 36 100.0 30 AGCCCAAGCA .................................... TAGTACGCATAATCAATTCATCAAGCTTGA 631221 36 100.0 30 TCAAGCTTGA .................................... GTAGTGACCCAAAATTCTATGACCTTGAAA 631287 36 100.0 30 GACCTTGAAA .................................... AGATTGTGGTGCTTACGGAAAATTCCTTGT 631353 36 100.0 30 AATTCCTTGT .................................... TGGCAAGAAGTGTAAGAGATGCAATGGATA 631419 36 100.0 30 GCAATGGATA .................................... TTTATTATCATTATTCTTCTTCCCAAGCGT 631485 36 100.0 30 TCCCAAGCGT .................................... TTTTATAGAATTTGGTGGTGAACTTTTTCA 631551 36 100.0 29 AACTTTTTCA .................................... AATGGGTCACAGATTGCCATAATAAGGAG 631616 36 100.0 30 TAATAAGGAG .................................... CCGAGGTCACTTTAGAACCCACAAAATAAG 631682 36 100.0 30 ACAAAATAAG .................................... ATGAGAGAACACAGTATAGACCCTGATACA 631748 36 100.0 30 CCCTGATACA .................................... CAGTATTAATGAGGTTTGGGTGGTCATTCC 631814 36 100.0 31 TGGTCATTCC .................................... CCATACTCTCTATCAGTTCATTTAATTCTTC 631881 36 100.0 30 TTAATTCTTC .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 631947 36 100.0 30 TCCAAAACGG .................................... ATGAATTACATTCATGATTTTATCGAGTTT 632013 36 100.0 29 TATCGAGTTT .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 632078 36 94.4 GACGTGGGCA ..................................GT TTGATTCA ========== ====== ====== ====== ========== ==================================== 34 36 29 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [64,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_006396 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1128074 19 100.0 47 NNNNNNNNNN ..........A........ CTGACATCACCAGACAGTTGACCCGACACCACCATACAAGTGTTCTA 1128140 19 100.0 45 NNNNNNNNNN T...........G...... TCCAGTTCGACTACAGCCAGACCAGAATGGTGAACACGTGTTCAC 1128204 19 100.0 36 NNNNNNNNNN ................... CGCACGGAAGGTGTGCAAGCGTCTGAATCTACGAAA 1128259 19 100.0 36 NNNNNNNNNN .......G........... TTTGTGGCGTTGTTCCGAGTTCCGATTCGCCCTTGC 1128314 19 100.0 36 NNNNNNNNNN ........G.......... TCACGTACTGCTTGAGGTGTGTGAGAGTATGCTGAG 1128369 19 100.0 42 NNNNNNNNNN ................... CCAAAAGGCCGTTTTGGGCGGTTTTCCCGTCGGATCGGGTTC 1128430 19 100.0 42 NNNNNNNNNN ................... TTCGAAACGGAATACGTAGGGTCGTGGTGGAACCGGACGGAC 1128491 19 100.0 1 NNNNNNNNNN .....GGT........... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 8 19 40 ACACCACCCTGCAAGTGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [215,181] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_006448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 863999 36 100.0 36 AAGATATGGG .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 864071 36 100.0 35 TTCCTAGAAA .................................... TTTGAATAGTCTTTGAATCGCATTTGAACCATATA 864142 36 100.0 38 GAACCATATA .................................... AGGTTTTTTGCCATAGATTTTCCAAGACCTTCCCAACT 864216 36 100.0 CTTCCCAACT .................................... GCTTTCTAGC ========== ====== ====== ====== ========== ==================================== 4 36 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,204] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_006461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 872101 36 100.0 35 NNNNNNNNNN .................................... TCGTAAGCGATAACGGGGAGGGCGACGCCAATCGC 872172 36 100.0 41 NNNNNNNNNN .................................... GCCACGGCGTACGCCGCCGCCCAGAGGGCCTTCTGGTTCAG 872249 36 100.0 39 NNNNNNNNNN .................................... TTTGCGAGGATTACCCCCTCGGTGGGCCCGAGGAGGTTC 872324 36 100.0 39 NNNNNNNNNN .................................... CACGTCCCTCACGACCGAGGCCAGGGACGTCTTCACGTG 872399 36 100.0 38 NNNNNNNNNN .................................... CTCCCTCCTTTCCCGCCTATCTTACTCCCCCATGAGGT 872473 36 100.0 42 NNNNNNNNNN .................................... ACTTCAAAGTGAAGGAGCCTAGGGGCTTGGTCATAGACTGGC 872551 36 100.0 39 NNNNNNNNNN .................................... GGCGAGGAGCCGCCGCACCCCGATGATCTTGCCGTCGGA 872626 36 100.0 40 NNNNNNNNNN .................................... CATTGGCGTGGGTGCCACCCCGCCTACGCCGATGCTACGG 872702 36 100.0 43 NNNNNNNNNN .................................... TTTGCCCTTCTAGGGCCTTCTGGAGTTCGTGAAGGTTCGCCAC 872781 36 100.0 40 NNNNNNNNNN .................................... CTTCAGGAATGGGCACGCCCACCTGCCGGAGAAGTTCAAT 872857 36 100.0 41 NNNNNNNNNN .................................... CTAAGCAGGAGGAGGCCCACGGCCTGGTAGAGGCCAAAATA 872934 36 100.0 42 NNNNNNNNNN .................................... ATCTCTAACCAGGCTACGGAGAGGATAGTGGAACTCTACCGG 873012 36 100.0 39 NNNNNNNNNN .................................... TATCAAGGGTCTTCCGCAAGCGGAAGGCGCGCGGGGAGT 873087 36 100.0 41 NNNNNNNNNN .................................... CAGCCCGCTCCATCTCGGCCAGCTCTAGGGCGTGGGGACCA 873164 36 100.0 1 NNNNNNNNNN ................................AT.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 15 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [469,13] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_006449 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 625101 36 100.0 30 NNNNNNNNNN .................................... AGAACGTATTCCAAAACCTCTTTACGATTA 625167 36 100.0 30 NNNNNNNNNN .................................... TTAACTGTTATCAAAATGATAAGATAGTCT 625233 36 100.0 30 NNNNNNNNNN .................................... CGTTGATGTTTATTCAAGTAAAATAATTAA 625299 36 100.0 30 NNNNNNNNNN .................................... TCCTTTCACGGGTAGCACACTAACATACAC 625365 36 100.0 30 NNNNNNNNNN .................................... GTTGGCAATGCAAACAACCTTTATGAACCG 625431 36 100.0 30 NNNNNNNNNN .................................... TTTATTTCCTTGCGATAACGTTCCACCTTT 625497 36 100.0 30 NNNNNNNNNN .................................... AGATTATAAGGAACACAACCAACTATATAG 625563 36 100.0 30 NNNNNNNNNN .................................... ACGACATCAAGCTGATTGTCTTCTACATAA 625629 36 100.0 30 NNNNNNNNNN .................................... TTTGGAATACTGAATGTTTTACTGAAAATC 625695 36 100.0 30 NNNNNNNNNN .................................... ACACCACTATCTTTTCCTCCTGAAAATGAA 625761 36 100.0 30 NNNNNNNNNN .................................... GTAATTCCACGAAATTATCAACCTTATGCA 625827 36 100.0 29 NNNNNNNNNN .................................... TTGGAGGATTGCCCCATATTCCCAAGAGT 625892 36 100.0 30 NNNNNNNNNN .................................... GAGAGGCGTTAAATATAGAAATGCAAGATT 625958 36 100.0 30 NNNNNNNNNN .................................... TTTTAACGTCATCAGTCCACCGCCTTAAAT 626024 36 100.0 30 NNNNNNNNNN .................................... CACCTCTTTCGATGGAAAGGTATCCTTCTA 626090 36 100.0 30 NNNNNNNNNN .................................... GACCAAAGTTTGATTATAGAGCTATACACC 626156 36 100.0 30 NNNNNNNNNN .................................... ACCATCATTCTTACCATTACAACTGTAATG 626222 36 100.0 30 NNNNNNNNNN .................................... ATACGAATTCGGTTCGCACAATTACAATTC 626288 36 100.0 32 NNNNNNNNNN .................................... TATCAACGCAATCATTACAACAACTTCAAACA 626356 36 100.0 30 NNNNNNNNNN .................................... ATCTACGTGTCAATACATATCACAAAACAG 626422 36 100.0 29 NNNNNNNNNN .................................... ATTTTTAGAAATTTCTGATATAATAATGA 626487 36 100.0 30 NNNNNNNNNN .................................... TTGTTGGAACAAGGACGACTTGGTAAACTA 626553 36 100.0 30 NNNNNNNNNN .................................... CATATTAAGCTGACTGGGCCTAATGCTTTT 626619 36 100.0 30 NNNNNNNNNN .................................... TTCATAGCATACCGTAGTTGTAAAATCTAT 626685 36 100.0 30 NNNNNNNNNN .................................... AACATTTAGGGAATGAAATTGATAAGACTG 626751 36 100.0 30 NNNNNNNNNN .................................... AACATGAGAAACTGTAGAAAACAAGCAATA 626817 36 100.0 31 NNNNNNNNNN .................................... TGGTGAAGATGGCAGTCATAAATGGCACATT 626884 36 100.0 30 NNNNNNNNNN .................................... AAGGGTTGAAAAATGTTGGTATATCAAACG 626950 36 100.0 30 NNNNNNNNNN .................................... TTCTGGTAGTGGATTTAGTCAAACAGATGT 627016 36 100.0 30 NNNNNNNNNN .................................... TCCATAGAGCGTCTTAAACAAAGAATAGTC 627082 36 100.0 30 NNNNNNNNNN .................................... GTTGGCAATGCAAACAACCTTTATGAACCG 627148 36 100.0 30 NNNNNNNNNN .................................... CATATTAAGCTGACTGGGCCTAATGCTTTT 627214 36 100.0 30 NNNNNNNNNN .................................... TTCATAGCATACCGTAGTTGTAAAATCTAT 627280 36 100.0 30 NNNNNNNNNN .................................... AACATTTAGGGAATGAAATTGATAAGACTG 627346 36 100.0 30 NNNNNNNNNN .................................... AACATGAGAAACTGTAGAAAACAAGCAATA 627412 36 100.0 31 NNNNNNNNNN .................................... TGGTGAAGATGGCAGTCATAAATGGCACATT 627479 36 100.0 30 NNNNNNNNNN .................................... TTATGATTGAATGACATGGTTGTATAAGTA 627545 36 100.0 30 NNNNNNNNNN .................................... TTTCTTTAGGAATACCAGGGAGTTCAGCTT 627611 36 100.0 30 NNNNNNNNNN .................................... TGGCAGAGATTACACAGCAACGGAAACAGC 627677 36 100.0 30 NNNNNNNNNN .................................... GGGTATCATTGTATCTAGTGATGGACCTGA 627743 36 100.0 30 NNNNNNNNNN .................................... ATTTGAAAAATGCACAACAGCGTTTGATAG 627809 36 100.0 1 NNNNNNNNNN .........T........................GT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 42 36 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [65,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_006461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 874397 36 100.0 40 GTCTTCTCCA .................................... CACCTCACCTCCACTCGCTTATCACGCGCCTCCACCAATG 874473 36 100.0 41 TCCACCAATG .................................... GGGGTCATAGATCCAGTCCCTAGGCGGGCCGAGGCGAATCC 874550 36 100.0 40 AGGCGAATCC .................................... TTGCTGATTGTGAATGATGCCCATTCCTCCTTAGAAGGAA 874626 36 100.0 TTAGAAGGAA .................................... GCTCGTCACGGGAAGCGCAAAAAGGTAGCTCCTAAGG ========== ====== ====== ====== ========== ==================================== 4 36 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [234,262] Score: 0/0.18 # # Final direction: F [0.74,0 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 144129 36 100.0 41 GGGGGGTACC .................................... CGGAGGGGCCCCCTTCTCCCCCCGGGGCGGCATTTTCCCGG 144206 36 100.0 42 ATTTTCCCGG .................................... TCCCGAGGCCCGGTAGTGGGCCGTTGACCTCGGGCGCCTCCG 144284 36 100.0 37 GGCGCCTCCG .................................... GACCTTGAGGAGGGCTCCGAGTCTTTTCAGGGCGGGT 144357 36 100.0 38 CAGGGCGGGT .................................... AACCCTCCGCGCCATCGCCTCCCGCCTCTACCACCTCT 144431 36 97.2 40 TACCACCTCT ...................T................ CCGTAGATAAGGCGCCCGGGGACGACCACGTCAAGGCGCA 144507 36 100.0 38 TCAAGGCGCA .................................... CGGGGATGTAGTCCCCGGAGCTAGCCGGGGGAGGACCT 144581 36 100.0 42 GGGAGGACCT .................................... GGTGCGAGGGGGTGGACCGCTAGTTGCGCCTCTATTCAAGAT 144659 36 100.0 37 TATTCAAGAT .................................... CCGGGAAGGCCGTGGGCTCGGGCACCGCCGCCCCGAG 144732 36 100.0 CCGCCCCGAG .................................... CACAGAGCGGCCCTTTGGGGTGGGTTAGAAGAAGAAGAA ========== ====== ====== ====== ========== ==================================== 9 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [144,88] Score: 0/0.18 # # Final direction: F [0.74,0.27 Confidence: MEDIUM] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 135156 36 100.0 39 GTATGGCATG .................................... TGCTCTAATCGGGCCTGTTCGGCTATGGCCTTGGGGCTC 135231 36 100.0 40 CTTGGGGCTC .................................... ACAACCCGCCCAAAGGGAATGCCGCTAGCCCCAGACACAT 135307 36 100.0 36 CCAGACACAT .................................... CAGTCCCACCCCTCGTGGGGGGCGGCCCTGTCGTCG 135379 36 100.0 39 CCTGTCGTCG .................................... CGCACCCTCCTTCCGAGCTTCCACCCGGCGTACATGGCC 135454 36 100.0 39 GTACATGGCC .................................... TTCAGCAGACCGAAGTGTCTTCCGTTGCGAACAGTGTAG 135529 36 100.0 42 AACAGTGTAG .................................... CCTCATCAGCGCATCTAGAGCCTGAATTATCCTCATTTCTTC 135607 36 100.0 40 TCATTTCTTC .................................... GCCATCACCGTGAGGCCGCCCTCCACCAGCTCCCCCTCCA 135683 36 100.0 40 TCCCCCTCCA .................................... TTTCTTAATTACGAGCCAGTCATTCGGATAAACCATGAGA 135759 36 100.0 39 AACCATGAGA .................................... TGAAAGTTTCGGTGGTCCCCCCCGCCCTCCACCAGCGGA 135834 36 100.0 40 CACCAGCGGA .................................... CCGCAGCTGGGGCAAGTGCAACCGCAGTAGCTCATACTCC 135910 36 100.0 40 CTCATACTCC .................................... TTGGCGGTCAGGGTTTGGTACCGCACCGTGTTCGGCGTTA 135986 36 100.0 42 TTCGGCGTTA .................................... TTCTTGATTATCCTGACCTTGTCCTTCATCTTTGACCTCCTT 136064 36 97.2 TGACCTCCTT ..................................C. TCGCGGGG ========== ====== ====== ====== ========== ==================================== 13 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [238,359] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 189509 29 93.1 32 AAGGGGGTCC --........................... TCGTCCGCAAGCTCGTCGGGCACCTCCTCCGG 189570 29 96.6 33 CCTCCTCCGG .................T........... GCCGGAGGCCCGGCCCGGAGGGGTCGTAAGACC 189632 29 96.6 33 TCGTAAGACC ...............C............. GCCCCCGCGGGAGCGGCGCGCCTTGCTAGAGGA 189694 29 100.0 32 TGCTAGAGGA ............................. GACCGCTTCACGTCCCGGAGTCGTGTCAGGGG 189755 29 100.0 31 GTGTCAGGGG ............................. TTGCCATTACTATTACTACCGGCAACATCGC 189815 29 100.0 32 GCAACATCGC ............................. GGCGTGGCCGGAGGGGGTGCCGAATGGCTAAG 189876 29 100.0 32 AATGGCTAAG ............................. GTGGAGGTCTACGCCGGGAACCGATTTTTCAC 189937 29 100.0 33 GATTTTTCAC ............................. GGCCCGGAGCATGGCCTGCAGGACGGCGGAGGG 189999 29 100.0 33 CGGCGGAGGG ............................. GGCCCGGGTCCTGGGCCACGGCTGGGCTAAAGG 190061 29 100.0 32 GGGCTAAAGG ............................. CGGAGGAGCCACAGGTAGGCCGCCCGGGCCAG 190122 29 100.0 32 CCCGGGCCAG ............................. CCGAGTGGGTCGTCCGCCTCGTTGAGTACCCT 190183 29 100.0 33 TGAGTACCCT ............................. GAGGCGCTGCTGAGCCCCAAGGCACTACGGCCC 190245 29 100.0 33 ACTACGGCCC ............................. GCCTCCACACCAGGCCACCAGGTCTGCGGCCCC 190307 29 100.0 32 CTGCGGCCCC ............................. CCCTCTTGTTCTCTCTGGCCGCCCAACGAGGT 190368 29 100.0 33 CCAACGAGGT ............................. CACCCCCTTGGCCTTGGGCTTATAGCGCTAACC 190430 29 100.0 33 AGCGCTAACC ............................. GCTCGCAAGCTTGAGGATAAACTGGATAGGGCC 190492 29 100.0 32 GGATAGGGCC ............................. CCTAGCCTCCTGTGACGGGTGGGGGCTGTCAG 190553 29 100.0 33 GGGCTGTCAG ............................. GGTGGAGAATCAGCCCGTTGAGGAGGTTGCCTA 190615 29 100.0 33 AGGTTGCCTA ............................. TAGACAAAGGTCGTCTTATATTCTGCGTCCGGC 190677 29 100.0 32 TGCGTCCGGC ............................. TTGCAGATAGGCGATGTTGGCGGCGATGACCT 190738 29 100.0 32 GCGATGACCT ............................. GGAGTGGCGGCCGCGAAGCGGGCCAGGTCTAC 190799 29 100.0 32 CCAGGTCTAC ............................. AGAGAGCTCGTAAAGGGCCCCGGCCAAATCGT 190860 29 100.0 32 GCCAAATCGT ............................. GCGGGTCACCTCGGAGTAGGAGCGGGTGGCGT 190921 29 100.0 CGGGTGGCGT ............................. ACATGACCAG ========== ====== ====== ====== ========== ============================= 24 29 32 CGGTCCATCCCCACGTGCGTGGGGACTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [63,190] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_006511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2906514 29 100.0 32 GCGCGATCCC ............................. TGTTCGAGTTGCGCCGGTGATTTGAAATCTTC 2906575 29 100.0 32 TGAAATCTTC ............................. GATGGCCTGTTTTTCAACGAAAGAGAAGAATT 2906636 29 100.0 GAGAAGAATT ............................. ACTAAACGTA ========== ====== ====== ====== ========== ============================= 3 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1044,298] Score: 0.18/0.18 # # Final direction: R [0.18,1.51 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 200811 31 100.0 30 CTGGTCATGT ............................... TGGCCTGCAGGACCTCCAGCATCTGGCGGG 200872 31 100.0 31 ATCTGGCGGG ............................... CCTAGACTCGGGCTATCCCGCCATCAGCGGC 200934 31 96.8 30 CATCAGCGGC .............................C. AGCGGATGGCGTCCTCATAGCGCATGCGCA 200995 31 100.0 CGCATGCGCA ............................... AACCCCAGGG ========== ====== ====== ====== ========== =============================== 4 31 30 GTAGTCCCCACGCGTGTGGGGATGGACCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [62,1058] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_006511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2889571 29 93.1 32 GGTGAAACGT --........................... GAATCATTCTGTCACGAACAATTATATTTTCT 2889632 29 100.0 32 TATATTTTCT ............................. GACATTTGACACTATGCGCGATGATGCAATCG 2889693 29 100.0 32 GATGCAATCG ............................. CTCATTACGATGTGACGCAATACCGTGCTGTC 2889754 29 100.0 32 CCGTGCTGTC ............................. AGCATTTTCTTTGCTGGCCCCCATTTGGTGTA 2889815 29 100.0 32 ATTTGGTGTA ............................. ACGTAGCCGGTACAACTGACGCAGTAGACGTG 2889876 29 100.0 AGTAGACGTG ............................. TCTAAATCTA ========== ====== ====== ====== ========== ============================= 6 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1315,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_006510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 354866 30 100.0 38 NNNNNNNNNN .............................T CTCAATTAGCTCTTGAATTTTACAACACTACAAAAGAC 354934 30 100.0 38 NNNNNNNNNN .............................. CTTGCACGCGACAAAAGGAAGCCCAACGCCGATCATTC 355002 30 100.0 38 NNNNNNNNNN .............................. TTTCTAATGATTCCATTCCCTTTCGCATTTAAGAAAGT 355070 30 100.0 38 NNNNNNNNNN .............................. ATTTCTTTGCAGCAAAGGTCTGCCGGAGTGGGAGGAAA 355138 30 100.0 36 NNNNNNNNNN .............................. TCAACGGCCGAAGCACAAATCGAATTGCAAGCTGAC 355204 30 100.0 34 NNNNNNNNNN .............................. CACATTCTTGTGACATTTCTTCTTTGATCCACTC 355268 30 100.0 34 NNNNNNNNNN .............................. GCTCGAGATTTTCGATATGGTCAATCAAGTTCAT 355332 30 100.0 36 NNNNNNNNNN .............................. ACCTTTAGCTCCTTCGCTGTGTCTCGGAAATTTGTC 355398 30 100.0 37 NNNNNNNNNN .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 355465 30 100.0 1 NNNNNNNNNN ................C............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 10 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [202,77] Score: 0.18/0.18 # # Final direction: F [5.82,0 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 227396 36 97.2 40 TTCATCCTAT .........................A.......... TCCCAAGGGGGGGCTTCACCCCGCGAACAACGCACTCGCC 227472 36 100.0 36 CGCACTCGCC .................................... GGGGCTCACCCCCCAACCCCATACCCCCCCGGATGG 227544 36 100.0 37 CCCCGGATGG .................................... GGAGTCCGGCGATGAGGGCGTAGAAGCGCCCATTCCT 227617 36 100.0 36 GCCCATTCCT .................................... GCGGATAGGGCATAGCGATAGGGTGGCCGTAGTGGG 227689 36 100.0 36 CCGTAGTGGG .................................... GGGTACATCACATGGGCGGACGTGGTGAAGAGGAGG 227761 36 100.0 39 GAAGAGGAGG .................................... CCAAAAGACCAAAAGGGCGATAAGGATGCTTATCACTCA 227836 36 100.0 36 TTATCACTCA .................................... CAGGAGGGCCGCCGGGGAGTAGCTGGGCTGGGCCCG 227908 36 100.0 36 GCTGGGCCCG .................................... GCTGGTGGACGAGCTGGCTGAGGGGCTTCCCAAGCC 227980 36 100.0 36 TTCCCAAGCC .................................... GGAGGCCCCCCTGGACTGGAGAGAGGGGTATCGGCT 228052 36 100.0 37 GGTATCGGCT .................................... GTGGCAGCGGTGCCAGATTGACAACGTGGACTACAAC 228125 36 100.0 41 GGACTACAAC .................................... AGGATTAGGTTGTGCTGTTCAGCCTCCCTTTCCACAACCCA 228202 36 100.0 CCACAACCCA .................................... GGCCCCCTCC ========== ====== ====== ====== ========== ==================================== 12 36 37 GTTTCAATCCTCTACGAGGCTGACGGGGTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.80,-3.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [294,241] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 201119 29 100.0 33 CATTTCCCAC ............................. GCCATCCCGAAGCCGTGCGGGTTGCCTTCCCAC 201181 29 100.0 32 GCCTTCCCAC ............................. CTATCTTTCGCGAACTACCGGGCTTGGGCCGC 201242 29 100.0 32 CTTGGGCCGC ............................. TAGGCCATCGTGTCTAGGGAGGGGTTAGACCC 201303 29 100.0 33 GGTTAGACCC ............................. GACGGTAGACCCCGAGACCGGGGAAATCCTGGA 201365 29 100.0 32 AAATCCTGGA ............................. GAAAGCCCGAACTCATGGCGGACCGCGAACAC 201426 29 100.0 33 CCGCGAACAC ............................. TGCCCCTCTGGCGGCCTAAGGAGGGTCATAAGC 201488 29 96.6 34 GGTCATAAGC ............................A GACGACATCCTTAGCGCCCTCCTCATGGCCCTAC 201551 29 100.0 32 ATGGCCCTAC ............................. GTTCCGGCCTCCACCCTCCGGTACGCGGAGAA 201612 29 100.0 33 ACGCGGAGAA ............................. ACCATGAGCGGCGAGTTAGGGTGCGAAATCGGG 201674 29 100.0 33 CGAAATCGGG ............................. GAGGCTCGCGGAGAAGGCCGCCACCTGCTCCCC 201736 29 100.0 33 CCTGCTCCCC ............................. TCCGACCCGCGCCGCCTCCTCTCTCTCTCCCTG 201798 29 100.0 33 TCTCTCCCTG ............................. ACTCGGGAGCCAAGACGTAGGTGGAGAACCGCC 201860 29 100.0 34 GAGAACCGCC ............................. GACATGACCCCCGAGCAGCGCCGCGCCCTCAAGC 201923 29 100.0 34 GCCCTCAAGC ............................. GTGGAGTCTTCCCCTTCCTCTTCTGGCCCCCAGC 201986 29 100.0 GGCCCCCAGC ............................. AGCTCCCGCT ========== ====== ====== ====== ========== ============================= 15 29 32 GTAGTCCCCACGCGTGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [370,69] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_006526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1242955 28 100.0 32 NNNNNNNNNN ............................ TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC 1243015 28 100.0 33 NNNNNNNNNN ............................ AGATGGAACAAATGTGTGGTGGGAAAATACTTT 1243076 28 100.0 32 NNNNNNNNNN ............................ CCGTGCGTCATAGACACCGGAAGGTGCGCCGT 1243136 28 100.0 32 NNNNNNNNNN ............................ TTCTCAAAAAGGAAAAGAAATTGGAACAGATT 1243196 28 100.0 32 NNNNNNNNNN ............................ GTCGAATAATTTTAAGCGTGAACCCGTATCAG 1243256 28 100.0 33 NNNNNNNNNN ............................ ATCGAACTGCGTGCCTGATAGCCGATACGCTGA 1243317 28 100.0 34 NNNNNNNNNN ............................ GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC 1243379 28 100.0 32 NNNNNNNNNN ............................ ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG 1243439 28 100.0 1 NNNNNNNNNN ............G.......T.GCTT.G NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [558,93] Score: 0.18/0.18 # # Final direction: F [1.83,0 Confidence: HIGH] >NC_006510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1983796 30 100.0 37 CGTTATCCAA .............................. GAGGCGCTTTCGGGCTTCTCCGATATAATGTCGCAGA 1983863 30 100.0 38 ATGTCGCAGA .............................. CGATAAAACAAAGGAGGAGATAGCATGTTTGCAATCTT 1983931 30 100.0 37 TTGCAATCTT .............................. GGCTGAAACGATTGAACCGGCTGAAACGGCGGAACCG 1983998 30 100.0 35 GGCGGAACCG .............................. TCGTTCGTTACGCGGAAGACGCCAGCGTATTTTTT 1984063 30 100.0 CGTATTTTTT .............................. TAAAAGTATC ========== ====== ====== ====== ========== ============================== 5 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [390,139] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_006510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3279485 32 96.9 34 GCGAGAGAAT -............................... TTATCTACAGTCGGGAACAACCTCCGCGATGTTG 3279551 32 96.9 36 CGCGATGTTG .T.............................. TCACACCCTTCCGACGTCTGGCGGGCCGCAGGAAAT 3279619 32 100.0 34 CGCAGGAAAT ................................ ACGAGCCGAGCGGTTCGGGCCGCACTTTTGGAAA 3279685 32 100.0 CTTTTGGAAA ................................ CCCAGAAAGCA ========== ====== ====== ====== ========== ================================ 4 32 34 GAGTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [403,373] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_006526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1590356 28 100.0 32 ATTTACTCTA ............................ GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC 1590416 28 100.0 32 AGCTGCGGCC ............................ TTGACGCTGTGAGCGTGACGATATGCTTTCAC 1590476 28 100.0 33 ATGCTTTCAC ............................ ATCGGGGCATAAAATAGCGACTTGCTCACCGAT 1590537 28 100.0 32 GCTCACCGAT ............................ GTCTGGCTGAAATGAGGTCCGACGATTTGCAT 1590597 28 100.0 33 CGATTTGCAT ............................ ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT 1590658 28 100.0 CAGACGCAAT ............................ ATATAGAAGAT ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [476,642] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_006513 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1941465 37 97.3 35 TCAAATGATA ............A........................ GGCTGCGCCTCGTCGGCGAGCAGGGTCCGGAACTG 1941537 37 100.0 35 TCCGGAACTG ..................................... ACCAAGATCAAGACGATCGGCAAGCTGCTGGACGA 1941609 37 100.0 34 TGCTGGACGA ..................................... CGTCGCAAAAGAGGACGACAACGGGCTGTACGTC 1941680 37 100.0 37 GCTGTACGTC ..................................... CAAGCGCGAGTTTTACCGGAGGTACGGCAGCGAAGCG 1941754 37 100.0 36 CAGCGAAGCG ..................................... GGTTCGGGTGGTTAGGCATCTCAGCGGTTGGCCGAA 1941827 37 100.0 38 GTTGGCCGAA ..................................... CGATCAGTTCGGCGGGGGGTTCATCCGCGAACTAGAGC 1941902 37 100.0 35 GAACTAGAGC ..................................... TTCCTGAGCTTCCCTCCCACACGCTTACGCACGTA 1941974 37 100.0 34 TACGCACGTA ..................................... TGTTGACGCAGTCCCACTGCACGCCATGCAGCAC 1942045 37 100.0 36 CATGCAGCAC ..................................... ATGTTCCCCGAGGGGCAGGTGGTCAAGTTCGACCTC 1942118 37 100.0 36 GTTCGACCTC ..................................... CTCACGGATGTCGCGGTAGTCGAACACCGGCAGGGG 1942191 37 100.0 35 CCGGCAGGGG ..................................... TCAATGCCGGCTGGGACAACCGCGGCGAACAGCTT 1942263 37 100.0 34 CGAACAGCTT ..................................... GCTGGAACGCCTACCAGCAGATCAAGGACAACCT 1942334 37 100.0 34 AGGACAACCT ..................................... ATCGTTCGAGTTCGTTCTGCGGCGTAGTCATATT 1942405 37 100.0 39 TAGTCATATT ..................................... CAAGCTGGCGCCCGCCTCTTTGCGCCTCAAGTCGCAAAT 1942481 37 100.0 37 AGTCGCAAAT ..................................... CTGAGTGATGGCTGACAAAGACAAGAACGAATACCTT 1942555 37 100.0 35 CGAATACCTT ..................................... CATGCACACGGTATTCACGGCATCCTCCCTGTCTC 1942627 37 100.0 33 TCCCTGTCTC ..................................... GCGGCAGGCCGGGCGGTGCGCATCGTCGAGCGG 1942697 37 100.0 36 CGTCGAGCGG ..................................... GTCCTGAACCCGGCTGACTGGGCGACGATGGAAACG 1942770 37 100.0 36 GATGGAAACG ..................................... CGGCGGCAGCAGTAAAAAGTCGAGCACGAATACGAC 1942843 37 100.0 35 CGAATACGAC ..................................... GGCTGCCTCGCCGCGGTGAAGCAGGCGATCAGGGA 1942915 37 100.0 35 CGATCAGGGA ..................................... CCGGACTGCGACGGAAAGGGGCGGACTGAGAAGAT 1942987 37 100.0 35 CTGAGAAGAT ..................................... CGCGGATCAGCTTGATGTAGGCGTCGGTCCATCCC 1943059 37 100.0 34 GGTCCATCCC ..................................... GCGCCCGGCGAGCTTCGCCGACGCGGCGAACTTC 1943130 37 100.0 36 GGCGAACTTC ..................................... CACGGTCACCAATGCCGGCGTTGCCGGGTAACCACT 1943203 37 100.0 35 GGTAACCACT ..................................... CGCGAGGCTAAGGCGTATCTCGGCGTGCAGGACGT 1943275 37 100.0 35 TGCAGGACGT ..................................... CTTGGCGCTTACGCCGTGATCGTGATTGCCGTCAT 1943347 37 100.0 34 TTGCCGTCAT ..................................... GTGGGATCGGGCGCTCGACGACCTGCAACTGATG 1943418 37 100.0 35 GCAACTGATG ..................................... GCGTCGGTCCATCCGGCGTCGGCGAGCACGAGCTT 1943490 37 100.0 35 GCACGAGCTT ..................................... CACGTGAGTTGTGCGTCGAGTTCGCTTGGCAGGTT 1943562 37 100.0 34 TTGGCAGGTT ..................................... CCGGCAGATCGCCGAGCACCGCGCCAAGCTCGAA 1943633 37 100.0 35 CAAGCTCGAA ..................................... ATTAGTTGCACCGACGCGAGCGCCGAGTCGACGTA 1943705 37 100.0 34 AGTCGACGTA ..................................... ACGGCGACCCGCTGCGGCCGGACCTCGATTACCT 1943776 37 100.0 35 TCGATTACCT ..................................... TTCGAGCAGTCCGGACGACACGCACGACCAGACCG 1943848 37 100.0 35 GACCAGACCG ..................................... ATGCGAGCGCCAGCGCCTTCACGGCCGAAGACGCC 1943920 37 100.0 44 CGAAGACGCC ..................................... TCGACTGCCGAGCACCAGGCGCTGAAGACCGCCCACGACAAGCT 1944001 37 100.0 35 ACGACAAGCT ..................................... CCCGAGATCCTCGCCGCGGACCTGATCGTCAGCCA 1944073 37 100.0 36 TCGTCAGCCA ..................................... GGCTGCCCCGTGAGCGTGAAAACCTCGATCCATGCC 1944146 37 100.0 35 GATCCATGCC ..................................... CTCGCCAGGGCGCGACCGGCCGCCGTGCTCATGTC 1944218 37 100.0 34 TGCTCATGTC ..................................... CTTCGCCGGTGCCTACCAGCGCGACGACACAGGC 1944289 37 100.0 36 CGACACAGGC ..................................... CATGGCGAGGCGCGCCGCAGCGGGGTCGATGTCGGG 1944362 37 100.0 34 CGATGTCGGG ..................................... GGGTGAGCGCGTCGGCGATGAAAATCGACTCGGG 1944433 37 100.0 35 TCGACTCGGG ..................................... CGCACCTGTTCGTTCCAACCCCTCATGACCCACCT 1944505 37 100.0 35 TGACCCACCT ..................................... CGTTCGACTTGATGACCGACGCCGCTTATCACGGC 1944577 37 100.0 34 TTATCACGGC ..................................... CGTCACCACGGTCACGCTCGACCCGGTGCTGCGC 1944648 37 100.0 36 GGTGCTGCGC ..................................... GCCCCACACTTGCCCGGCGAGCGCGACGGCCGTATC 1944721 37 100.0 34 CGGCCGTATC ..................................... CGGCGCTGCGCGATGCGTGCTGCGAACTCGCGCT 1944792 37 100.0 35 AACTCGCGCT ..................................... GCCGCAATCCGCAACGGTGCGGAGAACGTCACCGA 1944864 37 100.0 34 ACGTCACCGA ..................................... CGCTCGGCGCTCACGCCTCACCCTCGATCGGCGC 1944935 37 100.0 36 CGATCGGCGC ..................................... GATGGCCCGACGCGTCGGGTGCGGCACGCTGTCGAT 1945008 37 100.0 35 CGCTGTCGAT ..................................... ACGATCGTCGGCCACGACAACCACGGCAACTACAC 1945080 37 100.0 36 GCAACTACAC ..................................... GAAGCCTTTTTGCGGGTCGTGGTTGTACTTGCGCGC 1945153 37 100.0 35 ACTTGCGCGC ..................................... GCGGCGTGGTCGTGGGCGGGAGGGTTCGGTCAGGC 1945225 37 100.0 35 TCGGTCAGGC ..................................... TTCAGCTTCTCGGCCTGCTCATAGAGATAGGTGTC 1945297 37 100.0 34 GATAGGTGTC ..................................... GCTGGCGACGGGTCGGTGGGAAGGGGGATCACAT 1945368 37 100.0 35 GGGATCACAT ..................................... GTGGCTGGGGCGGATTTTTTGCGGCTGTTGAGAGC 1945440 37 100.0 35 TGTTGAGAGC ..................................... ACAGTGATCGCCTGCACGTCGACGAAGGTTTTGTT 1945512 37 100.0 34 AGGTTTTGTT ..................................... GATCCAGGAGGCAGTTGAGGTCTGGATAGAGGGC 1945583 37 100.0 35 GATAGAGGGC ..................................... CGGAATTGGAGCGATCAGCACCGTAGCGCCCGACA 1945655 37 100.0 35 GCGCCCGACA ..................................... TGGACCAAGATTGGCGGGGGCGATTCGGTTCGGCG 1945727 37 100.0 34 CGGTTCGGCG ..................................... GGTCATCAAGGCGGTGGTGCACCGGCAGATCGAG 1945798 37 100.0 36 GCAGATCGAG ..................................... CAGGCGACGATTGATGCCGCAGACGCAGCCCAACAG 1945871 37 100.0 36 AGCCCAACAG ..................................... GCGCACCGATTCCGCGGTCGTCTTGCTGATCGACGC 1945944 37 100.0 35 TGATCGACGC ..................................... CGATTCTCGGCTGCCTCAAGTTGCGCGGGGCTAAG 1946016 37 100.0 34 CGGGGCTAAG ..................................... CCCGGACGTACTGGCTCAGCGGCGCACGGTCGAC 1946087 37 100.0 35 CACGGTCGAC ..................................... GGGCATGAGCGACGCCGAGTGGGATTACCTGTACC 1946159 37 100.0 35 TACCTGTACC ..................................... GGCTCGTCCATGTCCATGCACAGGACGATGTCGGA 1946231 37 100.0 36 CGATGTCGGA ..................................... GGTGAGGTCCAGGATGTGCCGCACGTTGCGCGGTGC 1946304 37 100.0 34 TGCGCGGTGC ..................................... TCTCGTCCGTGGTGTCGAGCCGGTACAGCAAGAG 1946375 37 100.0 39 ACAGCAAGAG ..................................... CGCATCAAAACGGCGCTGCTGTCGCGGCTGTCGGAAATC 1946451 37 100.0 34 GTCGGAAATC ..................................... TCGATAAGTACGACAAGGCGACGAAGCAGCGCAA 1946522 37 100.0 34 AGCAGCGCAA ..................................... GCATCTTTGTTACCACTAAGAGCGAGGACAGAAA 1946593 37 100.0 37 AGGACAGAAA ..................................... GGCTCTGCATGTGCGAGGACTGCGCTCCGTCGTTCGA 1946667 37 100.0 35 CGTCGTTCGA ..................................... GGCGCCGAATGGTCGCCTACACCGCCGACTGGATC 1946739 37 100.0 34 CGACTGGATC ..................................... GATGCTGCCCAGTGAAGAGACAAGCGCGACCGAG 1946810 37 100.0 34 CGCGACCGAG ..................................... TGAGGTTCAGACTGCTGACCGAGTCCTGTGCGTG 1946881 37 100.0 CCTGTGCGTG ..................................... TCCCGTCGAA ========== ====== ====== ====== ========== ===================================== 76 37 35 GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.30,-17.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [383,87] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_006513 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1948501 37 100.0 36 TGCTAGACCT ..................................... GGATATGACCTTCGGCTCGATGGTCGGATTCATGGT 1948574 37 100.0 35 GATTCATGGT ..................................... ATGATGTTGTCCTTGTTCATGGTCGGCGACTTATT 1948646 37 100.0 34 GCGACTTATT ..................................... CCTCCTGGTGCGGGAGCAGGTCAGTTGTCGTCGC 1948717 37 100.0 34 TTGTCGTCGC ..................................... GAGGAGAGATCGCCGGCTGCATCCCCATCAACGA 1948788 37 100.0 34 CCATCAACGA ..................................... TCCCCACGATCTTGCCCATGCACTCGTTCTGGCT 1948859 37 100.0 36 CGTTCTGGCT ..................................... CCGCCCCCACTGCCGCACCGCCTCGACGAATTCGCC 1948932 37 100.0 34 CGAATTCGCC ..................................... GGCGTCATCGCCTTGCTCGGTAGCGAACAAAAGC 1949003 37 100.0 36 GAACAAAAGC ..................................... GAACCCGGTCACGGGGACGATCCGCTGGTCATCGTC 1949076 37 100.0 34 GGTCATCGTC ..................................... GATCGAGTGCGTGTTCC