![[ICO]](/icons/blank.gif){kind=icon}
![[PARENTDIR]](/icons/back.gif){kind=icon}
![[TXT]](/icons/text.gif){kind=icon}
![[ ]](/icons/unknown.gif){kind=icon}
![[ ]](/icons/binary.gif){kind=icon}
| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| Makefile | 2018-05-09 12:20 | 355 | |
| acceptaa.cpp | 2018-05-09 12:20 | 2.8K | |
| accepthit.cpp | 2018-05-09 12:20 | 717 | |
| alignarrays.cpp | 2018-05-09 12:20 | 1.3K | |
| alignclust.cpp | 2018-05-09 12:20 | 891 | |
| alignprofs.cpp | 2018-05-09 12:20 | 408 | |
| aligntraps.cpp | 2018-05-09 12:20 | 4.3K | |
| alnarray.cpp | 2018-05-09 12:20 | 5.0K | |
| alngivenpath.cpp | 2018-05-09 12:20 | 21K | |
| alpha.cpp | 2018-05-09 12:20 | 2.4K | |
| assert.cpp | 2018-05-09 12:20 | 232 | |
| bittb.cpp | 2018-05-09 12:20 | 3.0K | |
| clustcons.cpp | 2018-05-09 12:20 | 2.4K | |
| clustconsr.cpp | 2018-05-09 12:20 | 3.5K | |
| cmp.cpp | 2018-05-09 12:20 | 5.3K | |
| comp.cpp | 2018-05-09 12:20 | 954 | |
| cons.cpp | 2018-05-09 12:20 | 4.7K | |
| distcalc.cpp | 2018-05-09 12:20 | 466 | |
| distcalc.h | 2018-05-09 12:20 | 1.0K | |
| distfunc.cpp | 2018-05-09 12:20 | 2.2K | |
| distfunc.h | 2018-05-09 12:20 | 771 | |
| dp.cpp | 2018-05-09 12:20 | 12K | |
| estring.cpp | 2018-05-09 12:20 | 11K | |
| estring.h | 2018-05-09 12:20 | 514 | |
| expandpiles.cpp | 2018-05-09 12:20 | 735 | |
| filterb.cpp | 2018-05-09 12:20 | 13K | |
| filterb2.cpp | 2018-05-09 12:20 | 12K | |
| findarrays.cpp | 2018-05-09 12:20 | 5.1K | |
| findpiles.cpp | 2018-05-09 12:20 | 2.2K | |
| fixbounds.cpp | 2018-05-09 12:20 | 12K | |
| forkmer.h | 2018-05-09 12:20 | 823 | |
| getarraydata.cpp | 2018-05-09 12:20 | 1.6K | |
| getccs.cpp | 2018-05-09 12:20 | 4.6K | |
| getconsaa.cpp | 2018-05-09 12:20 | 1.3K | |
| getgdtree.cpp | 2018-05-09 12:20 | 174 | |
| getparams.cpp | 2018-05-09 12:20 | 4.2K | |
| getsubseq.cpp | 2018-05-09 12:20 | 137 | |
| glbalign.cpp | 2018-05-09 12:20 | 16K | |
| hitstoimages.cpp | 2018-05-09 12:20 | 1.2K | |
| info.cpp | 2018-05-09 12:20 | 3.5K | |
| intlist.h | 2018-05-09 12:20 | 1.6K | |
| kmerdist.cpp | 2018-05-09 12:20 | 6.1K | |
| log.cpp | 2018-05-09 12:20 | 878 | |
| logaa.cpp | 2018-05-09 12:20 | 733 | |
| loghits.cpp | 2018-05-09 12:20 | 1.0K | |
| main.cpp | 2018-05-09 12:20 | 1.0K | |
| makecontigmap.cpp | 2018-05-09 12:20 | 2.9K | |
| makegraph.cpp | 2018-05-09 12:20 | 630 | |
| makeindex.cpp | 2018-05-09 12:20 | 2.0K | |
| mem.cpp | 2018-05-09 12:20 | 789 | |
| mergearrays.cpp | 2018-05-09 12:20 | 5.7K | |
| mergefilterhits.cpp | 2018-05-09 12:20 | 9.8K | |
| mk | 2018-05-09 12:20 | 50 | |
| mkrootmsa.cpp | 2018-05-09 12:20 | 5.0K | |
| msa.cpp | 2018-05-09 12:20 | 18K | |
| msa.h | 2018-05-09 12:20 | 4.9K | |
| multaln.cpp | 2018-05-09 12:20 | 713 | |
| multaln.h | 2018-05-09 12:20 | 3.6K | |
| myassert.h | 2018-05-09 12:20 | 227 | |
| options.cpp | 2018-05-09 12:20 | 5.4K | |
| outarray.cpp | 2018-05-09 12:20 | 5.0K | |
| outdetail.cpp | 2018-05-09 12:20 | 5.4K | |
| outdetailaa.cpp | 2018-05-09 12:20 | 3.9K | |
| outlocalaln.cpp | 2018-05-09 12:20 | 738 | |
| params.cpp | 2018-05-09 12:20 | 1.0K | |
| params.h | 2018-05-09 12:20 | 1.1K | |
| pilercr | 2018-05-09 12:20 | 820K | |
| pilercr.cpp | 2018-05-09 12:20 | 6.6K | |
| pilercr.exe | 2018-05-09 12:20 | 230K | |
| pilercr.h | 2018-05-09 12:20 | 8.9K | |
| pilercr.vcxproj | 2018-05-09 12:20 | 9.5K | |
| proffrommsa.cpp | 2018-05-09 12:20 | 4.2K | |
| profile.h | 2018-05-09 12:20 | 4.0K | |
| progaln.cpp | 2018-05-09 12:20 | 4.6K | |
| progress.cpp | 2018-05-09 12:20 | 2.3K | |
| progress.h | 2018-05-09 12:20 | 341 | |
| pwpath.cpp | 2018-05-09 12:20 | 6.9K | |
| pwpath.h | 2018-05-09 12:20 | 2.3K | |
| quit.cpp | 2018-05-09 12:20 | 959 | |
| readfilterhits.cpp | 2018-05-09 12:20 | 606 | |
| readmfa.cpp | 2018-05-09 12:20 | 4.3K | |
| revcomp.cpp | 2018-05-09 12:20 | 656 | |
| savefhits.cpp | 2018-05-09 12:20 | 128 | |
| savefilterhit.cpp | 2018-05-09 12:20 | 4.4K | |
| saveseqs.cpp | 2018-05-09 12:20 | 1.7K | |
| savetraps.cpp | 2018-05-09 12:20 | 1.2K | |
| scoremx.cpp | 2018-05-09 12:20 | 738 | |
| seq.cpp | 2018-05-09 12:20 | 5.4K | |
| seq.h | 2018-05-09 12:20 | 1.8K | |
| seqvect.cpp | 2018-05-09 12:20 | 6.5K | |
| seqvect.h | 2018-05-09 12:20 | 1.3K | |
| sw.h | 2018-05-09 12:20 | 1.3K | |
| swsimple.cpp | 2018-05-09 12:20 | 4.3K | |
| tbsw.cpp | 2018-05-09 12:20 | 3.2K | |
| tree.cpp | 2018-05-09 12:20 | 27K | |
| tree.h | 2018-05-09 12:20 | 9.0K | |
| types.h | 2018-05-09 12:20 | 2.1K | |
| upgma.cpp | 2018-05-09 12:20 | 9.3K | |
| usage.cpp | 2018-05-09 12:20 | 799 | |
| utils.cpp | 2018-05-09 12:20 | 6.8K | |
| utils.h | 2018-05-09 12:20 | 228 | |
| utils_linux.cpp | 2018-05-09 12:20 | 1.3K | |
| utils_other.cpp | 2018-05-09 12:20 | 286 | |
| utils_unix.cpp | 2018-05-09 12:20 | 680 | |
| utils_win32.cpp | 2018-05-09 12:20 | 661 | |
| validaa.cpp | 2018-05-09 12:20 | 3.2K | |
| writearrays.cpp | 2018-05-09 12:20 | 1.0K | |
| writegff.cpp | 2018-05-09 12:20 | 3.4K | |
| writepiles.cpp | 2018-05-09 12:20 | 680 | |