pilercr v1.06 By Robert C. Edgar tmp/SEQUENCE_0152349330629047384482.fna: 2 putative CRISPR arrays found. DETAIL REPORT Array 1 >SEQUENCE_0152349330629047384482 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 979356 28 100.0 33 TATGTTTAGA ............................ GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 979417 28 100.0 33 AAGGCGTAAT ............................ TGTGTTTGCGGCATTAACGCTCACCAGCATTTC 979478 28 100.0 33 CCAGCATTTC ............................ GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 979539 28 100.0 33 TGCAGAGCCA ............................ GAGCAGATACACGGCTTTGTATTCCGTGCGCCC 979600 28 100.0 33 CCGTGCGCCC ............................ GAATAGCAATAGTCCATAGATTTGCGAAAACAG 979661 28 100.0 33 GCGAAAACAG ............................ GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC 979722 28 96.4 CCGTTCTGTC .A.......................... ACCATATAAC ========== ====== ====== ====== ========== ============================ 7 28 33 GTGTTCCCCGCGCCAGCGGGGATAAACC Array 2 >SEQUENCE_0152349330629047384482 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1005300 29 100.0 32 TACTTTTAGA ............................. CTTTCGCAGACGCGCGGCGATACGCTCACGCA 1005361 29 100.0 32 CGCTCACGCA ............................. CAGCCGAAGCCAAAGGTGATGCCGAACACGCT 1005422 29 100.0 32 CGAACACGCT ............................. GGCTCCCTGTCGGTTGTAATTGATAATGTTGA 1005483 29 100.0 33 ATAATGTTGA ............................. TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC 1005545 29 100.0 33 GAGCGGTCGC ............................. CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC 1005607 29 100.0 32 CGCCGCCTGC ............................. TCAGCTTTATAAATCCGGAGATACGGAAACTA 1005668 29 100.0 32 ACGGAAACTA ............................. GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 1005729 29 100.0 32 CAGCCAGCTT ............................. CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 1005790 29 100.0 AAGCCGCCCA ............................. GGGGGCGCAT ========== ====== ====== ====== ========== ============================= 9 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG SUMMARY BY SIMILARITY Array Sequence Position Length # Copies Repeat Spacer + Consensus ===== ================ ========== ========== ======== ====== ====== = ========= 1 SEQUENCE_0152349 979356 394 7 28 33 + GTGTTCCCCGCGCCAGCGGGGATAAACC- 2 SEQUENCE_0152349 1005300 519 9 29 32 + GAGTTCCCCGCGCCAGCGGGGATAAACCG * ************************** SUMMARY BY POSITION >SEQUENCE_0152349330629047384482 Array Sequence Position Length # Copies Repeat Spacer Distance Consensus ===== ================ ========== ========== ======== ====== ====== ========== ========= 1 SEQUENCE_0152349 979356 394 7 28 33 GTGTTCCCCGCGCCAGCGGGGATAAACC 2 SEQUENCE_0152349 1005300 519 9 29 32 25517 GAGTTCCCCGCGCCAGCGGGGATAAACCG Array 1 >SEQUENCE_0152349330629047384482 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1005300 29 100.0 32 NNNNNNNNNN ............................. CTTTCGCAGACGCGCGGCGATACGCTCACGCA 1005361 29 100.0 32 NNNNNNNNNN ............................. CAGCCGAAGCCAAAGGTGATGCCGAACACGCT 1005422 29 100.0 32 NNNNNNNNNN ............................. GGCTCCCTGTCGGTTGTAATTGATAATGTTGA 1005483 29 100.0 33 NNNNNNNNNN ............................. TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC 1005545 29 100.0 33 NNNNNNNNNN ............................. CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC 1005607 29 100.0 32 NNNNNNNNNN ............................. TCAGCTTTATAAATCCGGAGATACGGAAACTA 1005668 29 100.0 32 NNNNNNNNNN ............................. GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 1005729 29 100.0 32 NNNNNNNNNN ............................. CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 1005790 29 100.0 32 NNNNNNNNNN ............................. GGGGGCGCATGACCGTAAACATTATCCCCCGG 1005851 29 100.0 32 NNNNNNNNNN ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 1005912 29 100.0 32 NNNNNNNNNN ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 1005973 29 100.0 32 NNNNNNNNNN .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 1006034 29 100.0 0 NNNNNNNNNN .T.........AT................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG