Example plots for the different running modes:

• 'Test input query CDSs' and 'Find and test all non-annotated ORFs':
  • Likelihood ratio plot (description)
  • Nucleotide-by-nucleotide plot (description)
  • Zoomed-in nucleotide-by-nucleotide plot (description)
  • Monte Carlo simulations plot (description)
  
  
• 'Six-frame sliding window plots':
  • Six-frame plot (description)

More information on the contents of these plots is given on the relevant results pages.


Example full output for the different running modes:

• Test input query CDSs (Hepatitis B Virus - S gene taken as the Query CDS; P, C and X genes taken as the Known CDSs.)
• Find and test all non-annotated ORFs (Enterovirus with single long polyprotein CDS annotated.)
• Six-frame sliding window plots (Luteovirus with no Known CDSs annotated.)