LOCUS       NC_003056               5853 bp ss-RNA     linear   VRL 13-JAN-2004
DEFINITION  Soybean dwarf virus, complete genome.
ACCESSION   NC_003056
VERSION     NC_003056.1  GI:15150434
KEYWORDS    .
SOURCE      Soybean dwarf virus
  ORGANISM  Soybean dwarf virus
            Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
            Luteovirus.
REFERENCE   1
  AUTHORS   Terauchi,H., Kanematsu,S., Honda,K., Mikoshiba,Y., Ishiguro,K. and
            Hidaka,S.
  TITLE     Comparison of complete nucleotide sequences of genomic RNAs of four
            Soybean dwarf virus strains that differ in their vector specificity
            and symptom production
  JOURNAL   Arch. Virol. 146 (10), 1885-1898 (2001)
  MEDLINE   21578621
   PUBMED   11722012
REFERENCE   2  (bases 1 to 5853)
  AUTHORS   Terauchi,H., Kanematsu,S. and Hidaka,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2000) Hidetaka Terauchi, Tohoku National
            Agricultural Experiment Station, Department of Crop Breeding;
            Akahira 4, Morioka, Iwate 020-0123, Japan
            (E-mail:tera@tnaes.affrc.go.jp, Tel:019-643-3524)
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB038147.
FEATURES             Location/Qualifiers
     source          1..5853
                     /organism="Soybean dwarf virus"
                     /mol_type="genomic RNA"
                     /strain="YS"
                     /isolate="M93-1"
                     /db_xref="taxon:12049"
                     /note="Soybean dwarf luteovirus"
     gene            144..2827
                     /gene="ORF2"
                     /locus_tag="SbDVgp1"
                     /db_xref="GeneID:921702"
     CDS             join(144..1220,1220..2827)
                     /gene="ORF2"
                     /locus_tag="SbDVgp1"
                     /note="ORF2 is translated from ORF1 by frameshifting."
                     /codon_start=1
                     /product="replicase"
                     /protein_id="NP_150431.2"
                     /db_xref="GI:21402920"
                     /db_xref="GeneID:921702"
                     /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVF
                     AAHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLKDGAPLRAWPQP
                     CAPIGSFRSSDDFQEAAREAENLSLMDPEPSLIKGSGDYSLDNPNRIEKFINLVQKKE
                     VLSATEQMIKHAYEEHIGEAPFGKWFNTLPSRMNYIKRAASKKAKAAKRSNSVRQMVN
                     EVNVIPDFISICDVVQVDTGEKLPPKKDKDGEPLEPEPKMKMMRRVRPEHYGDARSYI
                     RQHIRNNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTAMLVDYAMTMVPIPLKND
                     IERAKIVHSPAARQLRQDLGVLNAEGFLEGLCSDSGFESPFSILGLPEIVVRSGATPR
                     KSRSVISFLSQFTLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNKPGIFTN
                     LNYFRDSIVNKVGCPRTHTPEELAATYHSGKRSLYNAAVQSLKKKAVERSDANVTAFL
                     KMEKHLMSKKIAPRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFESPTVLSGYDSF
                     RVGKIIANKWSKFKRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFKDPILKELLHWQ
                     TENRIMLFVEDKILKFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKTLGVKAELCNNG
                     DDCVIICERKDENKFQHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMV
                     RKPESISKDAHSLISMASAEDVKTFMSATAQCGMILNSGVPVLDAYHKCLFKASGYKK
                     VSQEAIERIVSFGTQDKLGLRKERVEEPITMDNRLSYWESSGVDPQTQVLVERYFDNL
                     LVHIEPRGVKRLTPLLDKTLLSIASVARNSVSLPILSK"
     gene            144..1229
                     /gene="ORF1"
                     /locus_tag="SbDVgp2"
                     /db_xref="GeneID:921704"
     CDS             144..1229
                     /gene="ORF1"
                     /locus_tag="SbDVgp2"
                     /codon_start=1
                     /product="replicase"
                     /protein_id="NP_150430.1"
                     /db_xref="GI:15150435"
                     /db_xref="GeneID:921704"
                     /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVF
                     AAHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLKDGAPLRAWPQP
                     CAPIGSFRSSDDFQEAAREAENLSLMDPEPSLIKGSGDYSLDNPNRIEKFINLVQKKE
                     VLSATEQMIKHAYEEHIGEAPFGKWFNTLPSRMNYIKRAASKKAKAAKRSNSVRQMVN
                     EVNVIPDFISICDVVQVDTGEKLPPKKDKDGEPLEPEPKMKMMRRVRPEHYGDARSYI
                     RQHIRNNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTAMLVDYAMTMVPIPLKND
                     IERAKIVHSPAARQLRQDLGVLNAEVF"
     gene            3035..5203
                     /gene="ORF5"
                     /locus_tag="SbDVgp3"
                     /db_xref="GeneID:921703"
     CDS             3035..5203
                     /gene="ORF5"
                     /locus_tag="SbDVgp3"
                     /note="ORF5 is translated from ORF3 by readthrough.
                     readthrough domain (RTD)
                     readthrough product"
                     /codon_start=1
                     /transl_except=(pos:3635..3637,aa:OTHER)
                     /product="CP readthrough product"
                     /protein_id="NP_150434.2"
                     /db_xref="GI:21402921"
                     /db_xref="GeneID:921703"
                     /translation="MVAVSNVAIQRRRTRRAARRAPRVQLMAVPTVTSRPQRRGRQRR
                     RRRNNRGGSFISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHE
                     YKITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAIN
                     GLEWHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAKXVDGEPGPKPGPDPAPQP
                     TPTPEPTPAKHERFIAYTGTLSTLISARQSSDSISLYSIRSQRIRYIEDENSSWTNID
                     AKWYSQNSVEAIPMFVYPVPEGTWSIEISCEGYQAASSTSDPHRGKCDGMIAYDDDSS
                     KVWNVGQQNNVTITNNKADNDWKYGHPDLTINGDRFDQNQVVEKDGIISFHLVTTGPN
                     ASFFLVAPAVKKTAKYNFCVSYGDWTDRDMEFGMVSVVLDEHLEGARSSQYVRKTPRS
                     GHVGVNRSHRLQDNFVPTEYVSDEDSSSNSSIVSNRPSTPDNDSDAKFAESMKGKLPS
                     QTKLPPKGFLSQLSTKEKKEISNSKPSNVEGLVGPLVAAYGYPSQTGVHDAAREILQA
                     KEAAENLAELERDLKEINKLEPPDVIVQEEIPDFVPPSEKILKEDDPDYVPPIWHNAD
                     QAVLVSSYEPPDWSRPAYESGDPPKKTGTLKGTLSKLGGSLRSGESSLRGSLRKTQDQ
                     TDLDNKLSKLSVIQRSRYQRILNNLGKMRARTYIDGLDLD"
     gene            3035..3637
                     /gene="ORF3"
                     /locus_tag="SbDVgp4"
                     /db_xref="GeneID:921705"
     CDS             3035..3637
                     /gene="ORF3"
                     /locus_tag="SbDVgp4"
                     /codon_start=1
                     /product="coat protein"
                     /protein_id="NP_150432.1"
                     /db_xref="GI:15150437"
                     /db_xref="GeneID:921705"
                     /translation="MVAVSNVAIQRRRTRRAARRAPRVQLMAVPTVTSRPQRRGRQRR
                     RRRNNRGGSFISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHE
                     YKITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAIN
                     GLEWHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
     gene            3051..3620
                     /gene="ORF4"
                     /locus_tag="SbDVgp5"
                     /db_xref="GeneID:921706"
     CDS             3051..3620
                     /gene="ORF4"
                     /locus_tag="SbDVgp5"
                     /codon_start=1
                     /product="movement protein"
                     /protein_id="NP_150433.1"
                     /db_xref="GI:15150438"
                     /db_xref="GeneID:921706"
                     /translation="MSQYNDDALVEQHDALHGFSSWLFRRSPADHNAEDDNDDEGEII
                     EEEALFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRV
                     SYYSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSTNSVSQRAVRNVSQPELSMASNGM
                     IPVKINSRSTIRGTESPRSQAPSRSRSMS"
ORIGIN      
        1 agtaaagttg acacctttac agaagtgatc ttgcaagcaa gagttaattc atcaagagtt
       61 aatacaagat ccacctcccg gcaccttcgt atcgtgtttg aggtatctct agtgtttggt
      121 tgtttaaata ctagttaata ttaatgttta attttgatag tttagtgtcg gccaccgcta
      181 aggtggtcaa agattttata catttttgtt acaatagggc gaggcacgtg tattatgccc
      241 tcaaacgctg gctctgggag ctccagggtg tgtttgctgc acatgacgct tttgtcgaca
      301 tgtgctacga cgccatgtat ggcgtcgagg agtttgaatg ggaactgcaa aagcagttct
      361 caagtgctga acacgacgtg ctaatcgcca agcacgaatt tgagcgcctg ttaaaggatg
      421 gcgccccatt gcgggcatgg ccacaaccat gtgctcccat aggtagcttc cggtcgtctg
      481 atgacttcca agaagccgct agggaagctg aaaacctgtc cctgatggac ccagaaccct
      541 ccttgattaa agggtctggt gattactcgc ttgacaatcc caataggatt gaaaagttca
      601 tcaacctcgt tcagaagaaa gaggtacttt ccgccaccga gcaaatgata aaacatgctt
      661 atgaagagca tatcggtgag gcaccattcg gaaagtggtt caacacactg ccctctcgca
      721 tgaactatat taagagggct gcttcaaaga aggccaaggc ggctaagaga tcaaactctg
      781 tccgtcaaat ggtaaacgag gtaaatgtca ttcctgactt tatctcaata tgtgatgttg
      841 tccaggtgga tactggcgag aagctccccc ccaagaaaga caaagacggg gagccactag
      901 agcctgaacc caaaatgaaa atgatgagaa gggtcaggcc cgagcattat ggtgatgctc
      961 gttcatacat taggcagcat attcgtaaca acaacatgcg cctaattgac ggctctgatg
     1021 ttagtcatgc taccatcaac cgatatgctc ttaagttttg cgaagactta gagcttgata
     1081 tgaccagtac tgcaatgctg gttgattatg ctatgacaat ggtgcccata cccctcaaaa
     1141 atgacattga aagggcgaag attgtccatt ctcctgcagc caggcaactt aggcaggatt
     1201 tgggcgttct aaacgctgag gttttttaga ggggctctgc tccgactctg gttttgaatc
     1261 cccgttttct attttggggt taccagagat cgtggtacgt agtggagcta cacctaggaa
     1321 gagtcgtagt gttattagct ttctttcgca gtttacttta ggtctagatt accaatgccc
     1381 taatcccagt ttgcacaatg cattggtggc ggttgaacgt agagtgttca ccgttgggaa
     1441 aggaaatgag gtagtgctac cttacaagaa caaaccagga atatttacca atcttaatta
     1501 ctttcgcgac tcaattgtca acaaagttgg ttgtccaagg acccacactc ctgaggaact
     1561 agccgcaacg taccactctg gaaagagaag tctgtacaat gctgcagtcc aaagccttaa
     1621 aaagaaggcg gtcgaaagga gtgatgctaa cgttacagcc tttcttaaga tggaaaaaca
     1681 tcttatgagt aagaagatag cacccaggtt gatatgtccc cgcaacaaaa gatataatgt
     1741 tgaattggga cgtcggttga agtttaatga gaagaaattc atgcatgcaa tcgactcaac
     1801 ctttgaatcc ccaactgttc ttagtggata tgacagtttt agagttggga agataatagc
     1861 caataaatgg tccaaattta agagaccagt tgcaataggt gttgatgcga gcagatttga
     1921 ccaacacgtg ggggtagaag cactccaatg ggagcactct atttataacg gtgcgttcaa
     1981 agatcccatc ctcaaggagt tgctacactg gcagacagag aatagaatta tgctgtttgt
     2041 tgaagataaa atcctcaagt tcaaggtcaa aggacacagg atgtctggcg acatcaacac
     2101 ctcttctggc aacaaattga tcatgtgtgg tatgatgcac tactacttca agacactcgg
     2161 agtcaaagcc gaactctgca ataacggcga tgattgtgta atcatatgtg aacggaaaga
     2221 tgagaacaaa ttccagcaca tgcatagctg gtttaaagac tatgggtttg acatgcagat
     2281 tgaaactcct gtctacaaga ttggacagat agagttttgt caaagtaaac cagttaaaat
     2341 taatggctat tatagaatgg tgcgtaaacc agaaagcata tccaaagacg cccattccct
     2401 catttccatg gcatcagctg aagatgtcaa aactttcatg agtgctaccg cacaatgcgg
     2461 tatgatcttg aatagtggtg tacctgttct agatgcttat cacaaatgcc tatttaaagc
     2521 atcggggtac aagaaagtat cgcaagaagc aatagaaaga attgtctctt ttggaacgca
     2581 ggacaaactc gggctcagga aagagcgagt tgaagaacca ataacaatgg ataataggtt
     2641 gagttattgg gagtccagcg gggttgaccc acagacacag gtccttgttg aacgatattt
     2701 cgacaatctg ttggtccata tcgaaccccg cggtgtaaag agattgacgc ctttactaga
     2761 taaaactttg ctttcgattg cgagtgtagc acgaaattct gtgtcgctac caatactttc
     2821 aaaatagaag cactcatagt aaccatagta gtaataatag tagtagcagt tagtttatta
     2881 gactactcta gttcatacag ataaattgca acggattaca aattcctatc aggttttgct
     2941 tctggattta tttccagcat tcctgtttca atattggcaa tttattttgt ctacctaaaa
     3001 atttcaaaga atctgcgaga gataatcaac gagtatggtc gcggttagca atgtcgcaat
     3061 acaacgacga cgcactcgta gagcagcacg acgcgctcca cgggttcagc tcatggctgt
     3121 tccgacggtc accagcagac cacaacgcag aggacgacaa cgacgacgaa ggagaaataa
     3181 tagaggagga agctttattt ccggaggatc aggcaaggct cacacattcg tgttttcaaa
     3241 ggacggcatc aatggtagtt ccaagggaag tatcactttc gggccgtctt tatcagaatg
     3301 caagccattc tctgatggaa tactcaaggc ctaccatgaa tataagatca cgagtatctt
     3361 attacagttc atcaccgagg cctcttccac ctcgtcaggc tccatcgctt atgagcttga
     3421 cccacactgc aagtactccg aaattcaatc gctactcaac aaattcagta tcacaaagag
     3481 cggttcgaaa cgtttcccaa ccagagctat caatggcctc gaatggcatg ataccagtga
     3541 agatcaattc aagatccact ataaggggaa cggagagtcc aagatcgcag gctccttcaa
     3601 gatctcgatc aatgtcttaa cgcagaatgc taaataggta gacggagaac cgggtccgaa
     3661 accaggtcca gacccagcac cccagccaac accaacaccc gaaccaacgc cagccaaaca
     3721 cgagagattt atcgcgtaca ccggtacgtt gtccacgctt attagcgcgc gacagtcttc
     3781 tgacagtatc tcactctact ccattcggag tcagagaatt agatacatcg aggatgaaaa
     3841 ttccagttgg acaaacatag atgcaaaatg gtactcacag aattctgttg aggccattcc
     3901 aatgtttgtt tatccagtgc ccgaaggcac ttggtcaatt gaaatatctt gtgaaggtta
     3961 ccaggcagcg tcaagtacat cagaccccca tcgtggaaaa tgcgatggca tgattgctta
     4021 cgacgacgat tcttcgaagg tgtggaatgt tggtcagcag aataacgtaa ccattaccaa
     4081 taataaggcc gataatgatt ggaaatatgg tcaccctgat ctcacgatca atggtgacag
     4141 attcgatcag aatcaagtag tcgagaaaga tggaatcatt tcattccatt tagtaactac
     4201 tggcccaaat gcaagtttct ttctcgtcgc tccagctgtt aagaaaacag ctaaatacaa
     4261 cttttgtgta tcatacggag attggacgga tagagatatg gagtttggaa tggtatcagt
     4321 agtgctcgat gagcacttgg aaggtgcaag gagttctcag tatgttagga aaacgccaag
     4381 atcaggtcat gttggcgtca atcgttctca ccgattgcaa gacaatttcg taccgacgga
     4441 atatgtcagt gatgaagata gtagtagtaa tagtagtata gttagcaatc gaccatcaac
     4501 tccggataat gatagtgacg ccaaatttgc tgaatctatg aaaggtaagc ttccgtctca
     4561 gacgaagctc ccgcctaaag ggttcctatc acaattaagc acaaaagaga aaaaagaaat
     4621 ctccaattct aaaccctcga atgtcgaagg tctggttggt cctcttgttg cagcttatgg
     4681 atacccatct caaacgggtg ttcatgacgc agcaagagag atactgcaag ctaaagaagc
     4741 tgcagaaaac ctggcagaat tagaaaggga cttaaaggag attaacaagc ttgaaccacc
     4801 ggatgtaatc gttcaggaag aaatccctga ctttgtgccg ccatcggaga agatattaaa
     4861 ggaagatgat cctgactatg tacctccgat ttggcacaat gccgaccagg ctgtattggt
     4921 ctcaagttat gagcctccag actggagtcg gccagcttat gagtcaggtg acccacctaa
     4981 gaagacagga acactcaaag gtactctctc taaattaggg ggttccttaa ggagtggtga
     5041 atcgtctctt agaggtagcc tccgcaagac gcaagatcaa actgatctag ataacaagtt
     5101 atccaaactc agtgttatcc agagatcccg gtaccagagg attctcaata acctgggtaa
     5161 aatgcgtgcg cgaacatata ttgatggttt agatttagat tagtataata gaagtaagtg
     5221 tgcgctttcc atcacattag gtcggagcca accttggtga gttgctgtcg tgggatcctg
     5281 ggaaacaggt tcggtgaaca aaaagccggt aatctcgggc gttcgtcaga cgccgtcgta
     5341 tcaacacagt atgcatatcc atcaataacc cgacttcttg taactaaaaa ttagagttag
     5401 tttccgcctc tcttgtaaac cacatacaag atgcgagctt gtggagagta ccatcccttg
     5461 aataaggatg gttgaaagtt tctggttcca atccattgat caaaattggc actgcttctg
     5521 gtgattacac tgccgctggt gatacagcgt aaacaatttc tgctacttac tcgatgaaat
     5581 gagagtaact agtaaagtct tgccgttcac atgtttattc gacggtacta ggcttcgtcc
     5641 ctttgatgac gttaaatgaa agcggagtaa accgacacca cctcactggg ttgggtcaac
     5701 ctagggaaac cgggaaaatg cccgggacac ttggtttagt ggattttaaa ctcgagggct
     5761 cttcctcgtt aaaaaggggg tagccaggtt gaaaactggc attagggagt gatccctctt
     5821 tgttgttaag gtggctttgt gtccacctgc ccc
//
