LOCUS NC_003680 5273 bp ss-RNA linear VRL 03-AUG-2004 DEFINITION Barley yellow dwarf virus - MAV, complete genome. ACCESSION NC_003680 VERSION NC_003680.1 GI:20219026 KEYWORDS . SOURCE Barley yellow dwarf virus - MAV ORGANISM Barley yellow dwarf virus - MAV Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Luteovirus. REFERENCE 1 (bases 1 to 5273) AUTHORS Ueng,P.P., Vincent,J.R., Kawata,E.E., Lei,C.H., Lister,R.M. and Larkins,B.A. TITLE Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV isolates of barley yellow dwarf virus JOURNAL J. Gen. Virol. 73 (Pt 2), 487-492 (1992) MEDLINE 92166764 PUBMED 1538199 REFERENCE 2 AUTHORS Vincent,J.R., Ueng,P.P., Lister,R.M. and Larkins,B.A. TITLE Nucleotide sequences of coat protein genes for three isolates of barley yellow dwarf virus and their relationships to other luteovirus coat protein sequences JOURNAL J. Gen. Virol. 71 (Pt 12), 2791-2799 (1990) MEDLINE 91108372 PUBMED 2273382 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from D11028. FEATURES Location/Qualifiers source 1..5273 /organism="Barley yellow dwarf virus - MAV" /mol_type="genomic RNA" /serotype="MAV-PS1" /db_xref="taxon:12038" gene 106..2708 /locus_tag="BYDVMAVgp1" /db_xref="GeneID:940437" CDS join(106..1122,1122..2708) /locus_tag="BYDVMAVgp1" /codon_start=1 /exception="artificial frameshift" /product="RNA-dependent RNA polymerase P1-P2 fusion" /protein_id="NP_620064.1" /db_xref="GI:20219031" /db_xref="GeneID:940437" /translation="MFFEILIGASTKAVKDFISHCYSRLKSIYYCFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWT DFFTKSRGGVYAPLSCEPTRQDLEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKE VVKERNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVL DSVGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSCNIRYLSQTHLGLVYKAPN ASLHNALVAVERRVYTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQ LLANSYSAGKRAMYHKAIASLRTIPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSK RYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGV DASRFDQHVSEQALKWEHGIYNGVFGDSELALALEHQITNNIKMFVEDKMLRFKVRGH RMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDH FLRYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSD VKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGR RTFQDTPITNHSRMSYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILL SIPENHSHNEY" gene 106..1125 /locus_tag="BYDVMAVgp2" /db_xref="GeneID:940440" CDS 106..1125 /locus_tag="BYDVMAVgp2" /note="ORF1" /codon_start=1 /evidence=not_experimental /product="replicase P1" /protein_id="NP_620065.1" /db_xref="GI:20219027" /db_xref="GeneID:940440" /translation="MFFEILIGASTKAVKDFISHCYSRLKSIYYCFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWT DFFTKSRGGVYAPLSCEPTRQDLEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKE VVKERNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVL DSVGF" gene 2822..4795 /locus_tag="BYDVMAVgp3" /db_xref="GeneID:940436" CDS 2822..4795 /locus_tag="BYDVMAVgp3" /note="read-through protein" /codon_start=1 /transl_except=(pos:3419..3421,aa:OTHER) /product="aphid transmission protein P5" /protein_id="NP_620066.1" /db_xref="GI:20219032" /db_xref="GeneID:940436" /translation="MNSVGRRNNRRRNGPRRARRVSAVRRMVVVQPNRAGPKRRARRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHLYK ITNVKVEFKSHASASTVGAMFIELDTWCSQSTLGSYINSFTISKSATKTFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPSPQPQPEPKP DPQPTPEPRQKRFFEYVGTPYVVIQTRESSDSIAVKAMNDQSFQYIENETSEQRTVKA WWNSNNSVQAQAAFIFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQSQSGD YWGVGNYVGCDITNLLGTNTWRPGHEDLELNSCKFTDGQIVERDAVISFHVKARGADP KFYLMAPKTMKADKYNYVVSYGGYTDKRMEFGTISVTVDESDVEAERYSRHTSTVRRT ENRDYGWMNVLPPYNPDQVPEQEDEQPVVDKEMDAGSPIDTASLTSDTEAEKAFDLKE EELTRAILEYEAATVSIPDAAPDILPSKSEMSSKPIDRDGRSLPKSQTKEVLGTYQGQ NITSDDVPPVIAEKLREVNRAPSTLLYDRQPKQPKNPLTRFVLSNKTSTASPGSQSST AGMTREQASEYTRIRKSLGLTAAKQYKASLDDT" gene 2822..3421 /locus_tag="BYDVMAVgp4" /db_xref="GeneID:940435" CDS 2822..3421 /locus_tag="BYDVMAVgp4" /note="ORF3" /citation=[2] /codon_start=1 /evidence=not_experimental /product="viral coat protein" /protein_id="NP_620067.1" /db_xref="GI:20219028" /db_xref="GeneID:940435" /translation="MNSVGRRNNRRRNGPRRARRVSAVRRMVVVQPNRAGPKRRARRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHLYK ITNVKVEFKSHASASTVGAMFIELDTWCSQSTLGSYINSFTISKSATKTFTAQQIDGK EFRESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" gene 2859..3323 /locus_tag="BYDVMAVgp5" /db_xref="GeneID:940439" CDS 2859..3323 /locus_tag="BYDVMAVgp5" /note="ORF4" /citation=[2] /codon_start=1 /evidence=not_experimental /product="movement protein" /protein_id="NP_620068.1" /db_xref="GI:20219029" /db_xref="GeneID:940439" /translation="MAQGEQGALAQFGEWLWSNPIEPDQNDELVDAQEEEGQILYLDQ QAGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTFTRSQTSRLSLSHTR PPLQSAQCLLNSTLGAHNQPWVATLTHSPSQNQQPKPSPPNRLTGRNSGRVR" gene 4905..5036 /locus_tag="BYDVMAVgp6" /db_xref="GeneID:940438" CDS 4905..5036 /locus_tag="BYDVMAVgp6" /note="ORF6" /codon_start=1 /product="hypothetical protein" /protein_id="NP_620069.1" /db_xref="GI:20219030" /db_xref="GeneID:940438" /translation="MDDLHVIAVCVLSTTVFAGFVLTIGAAASLCGCVYSTVYNTKV" ORIGIN 1 cttgtaacac actacacact cgttttgtat tcgagaagta gttgcaacaa cggtcccctt 61 attgcctgac tagctgaggg ccacccttct atccccaccg ccatcatgtt cttcgaaata 121 ctcataggag ctagcactaa ggcggttaaa gacttcatca gtcattgtta ctctcgtttg 181 aaatctatat attattgttt caaacgatgg ctgatggaga tatctgggca gtttaaggcc 241 catgacgcct ttgtcaacat gtgcttcggg catatggctg acattgagga cttcgaggca 301 gagctcgctg aggagtttgc cgagagggag gatgaggtgg aagaggcaag gagcctcttg 361 aaactgctgg ttgcccaaaa atctaaaact ggggtgaccg aggcttggac cgacttcttt 421 acgaagtcga gaggtggcgt ctacgcgcca ctttcctgtg agcctaccag gcaggaccta 481 gaagtcaaga gcgagaagct cgaaaaactt ctagaagaac agcaccaatt tgaggtgcga 541 gcggccaaga aatacatcaa ggaaaagggc cgcggcttca tcaactgttg gaacgacttg 601 agaagtcgtc tcaggctggt gaaggacgtc aaggacgagg cgaaggacaa tgccagagct 661 gctgccaaaa tcggagcaga aatgttcgcc cccgttgacg tgcaggacct ctacagcttt 721 acagaggtca aaaaggtgga gaccggcctc atgaaggagg tcgtaaaaga gagaaacggc 781 gaagaagaga aacacctcga gcccatcatg gaagaggtga gatctatcaa ggataccgcc 841 gaagccaggg atgccgcctc cacctggatt acagagacaa ttaagctgaa gaactcaacg 901 cttaacgcag atgaattgtc tctagccacc atcgcccgct acgttgaaaa cgtaggggac 961 aaattcaaac tcgacattgc tagcaagaca tatttaaagc aagtcgcatc gatgtctgtg 1021 ccaattccaa ccaacaagga catcaaattg aagatggtgc tgcagagtcc tgaagcacgt 1081 gccaggcggg aacgcatgga cgtgcttgac tctgtgggtt tttagagggg ctctgtaccg 1141 cctctggttt tgagagccca ttccccattc tcgggctgcc agagattgcg gtcacagacg 1201 gagcccgact ccgtaaggtt agttgtaata ttagatacct tagccaaacc cacctaggtc 1261 ttgtatataa ggcaccaaat gcctccctgc acaatgcgct tgtagcagtg gagagaagag 1321 tttacacagt aggaaagggg gataaggcaa tctacccccc ccgcccagag catgacattt 1381 tcactgatac aatggattac tttcagaaat ccattataga agaggtggga tactgtaaga 1441 catacccagc gcaactcctg gctaacagct atagcgcagg aaagcgggcc atgtatcaca 1501 aagctattgc atcattgaga actatccctt accatcagaa ggatgccaat gtgcaagctt 1561 tcctgaagaa ggaaaaacac tggatgacca aggacatcgc cccccgattg atttgccccc 1621 gcagcaagcg gtacaacatc atcctaggaa ctcgtttgaa attcaacgag aagaagatca 1681 tgcacgctat cgatagtgtg ttcggatccc ccactgtgct ttctggctat gacaacttta 1741 aacaaggaag aatcatagcc aagaagtggc aaaagtttgc atgccccgtc gccatcggcg 1801 tggatgctag ccgctttgac caacacgtgt cagagcaggc gcttaagtgg gaacacggga 1861 tatataatgg ggtctttgga gacagcgaac tggctcttgc acttgaacat caaatcacca 1921 acaacatcaa gatgtttgtt gaagataaaa tgcttagatt caaggtaaga ggccacagaa 1981 tgtccggtga cattaacacc agcatgggaa ataagctcat aatgtgcggc atgatgcatg 2041 cctatttcaa gaagctgggt gttgaagctg aactttgtaa caacggagac gactgtgtca 2101 tcatcactga tagagccaat gagaagctct ttgatggcat gtacgaccat ttcctccggt 2161 atggcttcaa catggtgacc gaaaaaccag tctacgaact ggagcaattg gagttttgcc 2221 agtcaaaacc ggtctctatt aatggaaagt atagaatggt cagaaggccc gatagcatag 2281 gcaaagatag cacaacacta ctgagcatgc tcaatcaatc cgacgttaaa agctacatgt 2341 cggccgtggc tcagtgcggc ttggtgctca acgctggggt acccatactt gagagcttct 2401 acaaatgcct atacagaagc tctgggtaca agaaagtgag tgaggaattc atcaaaaacg 2461 tcatttcgta tggaacggat gagagactac aaggtagacg taccttccaa gacacaccta 2521 tcaccaatca tagtaggatg tcctactggg aatcattcgg agttgaccct aagatacaac 2581 aaattgtcga gcggtactac gacaatctta cggtaagtgc ccaactccag agtgtgaagg 2641 tgactactcc acatctgcaa tcaatactac tttccatacc ggaaaaccac tcacataacg 2701 aatattaatt accagatttt agctgggttt ggaatagggt ttatagcgtc tataccctgt 2761 acattagctc tcacgtattt tatttacaat aaagtttcag acactactag agaggtagtg 2821 aatgaattca gtaggccgta gaaacaaccg caggaggaat ggcccaagga gagcaaggcg 2881 cgttagcgca gttcggagaa tggttgtggt ccaacccaat cgagccggac caaaacgacg 2941 agctcgtcga cgcacaagag gaggaggggc aaatcttata tctggaccag caggcaggac 3001 tgaggtattc gtattctcag tcaacgacct taaggccaac tcctcaggga caatcaagtt 3061 cggtcccgac ctttcgcaat gcccagcgct ttcaggtgga atactcaagt cctaccacct 3121 ttacaagatc acaaacgtca aggttgagtt taagtcacac gcgtccgcct ctacagtcgg 3181 cgcaatgttt attgaactcg acacttggtg ctcacaatca accttgggta gctacattaa 3241 ctcattcacc atctcaaaat cagcaaccaa aaccttcacc gcccaacaga ttgacgggaa 3301 ggaattcagg gagagtacgg tgaaccaatt ttacatgcta tacaaggcga atggtagtac 3361 atctgatacc gccgggcaat tcatcattac aatacgcgtt gccaacatga ctcccaaata 3421 ggtagactcc tcaacaccag aaccttcgcc acaaccccag ccagagccca aacctgatcc 3481 gcagccaaca ccagagcctc gacagaaacg gtttttcgag tacgtaggaa cgccctatgt 3541 tgtcatacaa actagggaga gttcggatag cattgccgtt aaggcgatga atgatcaatc 3601 ttttcagtac atcgaaaatg aaacttcgga gcaaagaacc gtcaaggcat ggtggaactc 3661 caacaacagt gtccaagcgc aagcagcatt tatatttcct atacccgctg gtgagtacag 3721 cgtgaatatc tcttgcgaag gtctacaatc tgtggaccac attggaggaa acagagacgg 3781 atattggata ggcttgatag cctaccaaag ccaaagtggg gactactggg gcgtaggtaa 3841 ctatgtcggc tgtgatataa caaatcttct aggaacaaac acttggcgtc caggccatga 3901 agatttggaa ttaaacagct gtaaattcac agatggacaa atagttgaaa gagatgctgt 3961 gatatctttc catgtcaaag ctaggggtgc tgatcccaag ttttacctca tggcacctaa 4021 aaccatgaag gctgacaaat acaactatgt tgtgtcgtat ggagggtaca cagataaaag 4081 aatggaattt ggaaccatat ctgtcactgt ggatgaatct gatgttgagg cagaacgcta 4141 tagcaggcac acgagcacgg tcaggagaac agagaaccga gattacgggt ggatgaatgt 4201 gctcccaccc tacaatcctg accaagtacc agagcaggaa gatgaacaac cagtggttga 4261 taaggaaatg gatgccggat cccctatcga caccgcatcg ttgacctctg atactgaggc 4321 tgagaaagcc tttgacttga aggaagaaga acttactagg gccattcttg aatacgaggc 4381 agccactgta tcaatacctg atgctgcccc ggatatcttg ccctctaaat ctgagatgag 4441 cagcaaacca atagaccgag atgggaggtc tttaccaaaa tctcagacaa aggaagtcct 4501 tggcacttac caaggccaga acatcacttc tgatgatgtt cctcctgtca tagctgaaaa 4561 attgcgtgaa gtaaacagag caccatctac tctgctttac gacaggcagc caaaacaacc 4621 taaaaatcct cttacccgtt tcgtattatc taataagact agcacggctt cccctggctc 4681 ccagtcttcc actgctggaa tgacgagaga acaagcatct gaatacacca ggattaggaa 4741 gtctttgggc ctaacagcag caaaacaata caaagcaagc ctcgatgaca catagtgaag 4801 atcaacacca ctcgcaaata cggatcctgg gaaacaggca gaacttcggt tcgtaagctc 4861 gggtaaacta gtcctttacc gccgtatcgt actttgtgtg gccgatggat gatctacatg 4921 tgatagcggt ttgcgtgctg tccacgacag tgttcgcagg ctttgtgttg acaatagggg 4981 ccgcagctag tctctgtggg tgtgtttatt caacagtcta taacacaaag gtctaatctg 5041 tgatacgacc aaccaaaaat aaacggggaa cctcgggttc agcgagaggg ctaacgaccc 5101 tcagtaattg gctggttctg ggagacatga ataccctcct atagaacgaa gtggaactcc 5161 accactgatc aaatcgggaa acatgcttct gtgttgtaca ctgccccgga gcccaccggg 5221 ttaacaaggc tattccacca gctcgatgaa atgagagtgg agtgaacggc cgg //