LOCUS NC_004666 5685 bp ss-RNA linear VRL 13-JAN-2004 DEFINITION Barley yellow dwarf virus - GAV, complete genome. ACCESSION NC_004666 VERSION NC_004666.1 GI:29366744 KEYWORDS . SOURCE Barley yellow dwarf virus - GAV ORGANISM Barley yellow dwarf virus - GAV Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Luteovirus. REFERENCE 1 (bases 1 to 5685) AUTHORS Jin,Z., Wang,X., Zhou,G. and Chang,S. TITLE Nucleotide sequence analysis of the genome of the GAV of barley yellow dwarf virus in China JOURNAL Unpublished REFERENCE 2 (bases 1 to 5685) AUTHORS Jin,Z., Wang,X., Zhou,G. and Chang,S. TITLE Direct Submission JOURNAL Submitted (16-JAN-2003) Plant Virology Group, Institute of Plant Protection, Chinese Acadamy of Agricultural Sciences, West Yuanmingyuan Road No. 2, Beijing 100094, China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY220739. FEATURES Location/Qualifiers source 1..5685 /organism="Barley yellow dwarf virus - GAV" /mol_type="genomic RNA" /db_xref="taxon:224578" gene 143..2745 /locus_tag="BYDVGAVgp1" /db_xref="GeneID:1485848" CDS join(143..1159,1147..2745) /locus_tag="BYDVGAVgp1" /note="low-abundance product derived from C1 ribosomal frameshift" /codon_start=1 /product="RNA-dependent RNA polymerase P1-P2 fusion protein" /protein_id="NP_813789.1" /db_xref="GI:29366745" /db_xref="GeneID:1485848" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKVAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKE VVKEVNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVL DSVGFLCGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVY KAPNASLHNALVAVERRVFTVGKGDEPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKT YPAQLLANSYSAGKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLIC PRSKRYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPV AIGVDASRFDQHVSEQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFK VRGHRMSGDINTSMGNKLIMCGTMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDG MYDHFLQYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSML NQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDKR LQGRRTFEDTPITNHSRMSYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQ SILLSIPENHSQNDY" gene 143..1162 /locus_tag="BYDVGAVgp2" /db_xref="GeneID:1485849" CDS 143..1162 /locus_tag="BYDVGAVgp2" /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase P1" /protein_id="NP_813790.1" /db_xref="GI:29366746" /db_xref="GeneID:1485849" /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFK AHDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWN DFFLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFIN CWNDLRSRLRLVKDVKDEAKDNAKVAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKE VVKEVNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATI ARYVENVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVL DSVGF" gene 2859..4835 /locus_tag="BYDVGAVgp3" /db_xref="GeneID:1485846" CDS 2859..4835 /locus_tag="BYDVGAVgp3" /note="translated from subgenomic RNA1 as a fusion protein via read-through of the coat protein (P3) stop codon" /codon_start=1 /transl_except=(pos:3456..3458,aa:OTHER) /product="aphid transmission protein P5" /protein_id="NP_813791.1" /db_xref="GI:29366747" /db_xref="GeneID:1485846" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGK EFRESSVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKP DPQPTPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQA WRTSNNGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGD YWGVGNYAGCDITNLLGTNTWRPGHEDLELDGCKFTNGQIVERDAVISFHVKAQGADP KFYLMAPKTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVGKA ENRDYGWMSVLPPYDPNQVPEQEEEQPMVDKEMDSRPPVEPPSPTSDTEAERAFDLRE EELTRARLEYEAATESIPDAAPDVLPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQ NITPDDVPPVIAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSST SGMTREQASEYTRIRKSMGLTAAKEYKASLADTW" gene 2859..3458 /locus_tag="BYDVGAVgp4" /db_xref="GeneID:1485847" CDS 2859..3458 /locus_tag="BYDVGAVgp4" /note="ORF3; translated from subgenomic RNA1; occasional read-through of stop codon produces P3-P5 fusion protein" /codon_start=1 /product="coat protein P3" /protein_id="NP_813792.1" /db_xref="GI:29366748" /db_xref="GeneID:1485847" /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRR TRGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYK ITNVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGK EFRESSVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" gene 2896..3360 /locus_tag="BYDVGAVgp5" /db_xref="GeneID:1485850" CDS 2896..3360 /locus_tag="BYDVGAVgp5" /note="ORF4; translated via leaky scanning on subgenomic RNA1" /codon_start=1 /product="movement protein P4" /protein_id="NP_813793.1" /db_xref="GI:29366749" /db_xref="GeneID:1485850" /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQ QAGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTR PPLQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" gene 4942..5073 /locus_tag="BYDVGAVgp6" /db_xref="GeneID:1485845" CDS 4942..5073 /locus_tag="BYDVGAVgp6" /note="ORF6; highly variable sequence among BYDV isolates" /codon_start=1 /product="P6 protein" /protein_id="NP_813794.1" /db_xref="GI:29366750" /db_xref="GeneID:1485845" /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" ORIGIN 1 tagtgaagat tgaccatctc acaaaagctg ttacgtgctt gtaacacact acacactcgt 61 tttgtaatcg agaagtagtt gcaagaacgg tcctctcatt gcctgactag ctgagagcca 121 tccttctatc cccaccgcca ccatgttctt cgaaattctt ataggagcta gtgccaaggc 181 ggtcaaagat ttcatcagcc actgctactc tagactgaaa tctatatatt attctttcaa 241 acgatggctg atggaaatat ctgggcaatt taaggcccat gacgcctttg tcaatatgtg 301 ctttgggcac atggctgaca ttgaagactt cgaggctgaa ctcgctgaag agttcgccga 361 gagggaggat gaggtggaag aggccaggag cctcttgaaa ctgctggtcg cccaaaaatc 421 taaatccggg gtgaccgagg cttggaacga cttcttcttg aagtcgaggg gcggtgttta 481 cgcaccgctc tcttgtgagc ccaccaagca ggaactagaa gtcaagagcg agaagctcga 541 gaggcttcta gacgaacagc accaattcga ggtgcgagcg gccaagaaat acattaaaga 601 aaagggccgc ggcttcatca actgctggaa cgacttgcgt agccgtctca gattggtgaa 661 ggatgtcaag gatgaggcga aggacaatgc caaagtcgct gcaaagattg gagcggagat 721 gttcgccccc gttgacgtgc aggacctcta cagctttaca gaggtcaaga aggtggagac 781 cggcctcaca aaggaggtcg taaaagaagt gaacggtgaa gaaacgaaac gcctcgaacc 841 catcttggaa gaggtgcgat ccatcaagga caccgccgaa gctagggacg ccgcctccac 901 ttggataaca gagacagtca aattgaaaaa ttcaaccctt aacgctgatg aactgtctct 961 cgccaccatc gcccgctacg ttgaaaatgt aggggacaaa tttaaactcg acattgccag 1021 caagacatat ctaaagcaat gcgcaacgat gtctgtacca attccaacca ccaaggacat 1081 caaaatgaag atggtgttgc agagtcctga agcacgtgcc aggcgggaac gcatggacgt 1141 gcttgactct gtgggttttt agaggggctc tgtaccgcct ctggttttga gagcccattt 1201 ccaattctcg ggctgccaga gattgcggtc acagacggag cccggctccg taaggttagt 1261 agcaatatta gataccttag ccaaacccac ttaggtttag tatataaggc accaaatgcc 1321 tccctgcaca acgcgcttgt ggcagtggag agaagagttt ttacagtagg aaagggggac 1381 gaacctattt accccccccg ccctgagcac gacattttca ctgatacaat ggactacttt 1441 ggtaagtcca taatcgacga ggtgggatac tgtaaaacat acccagcgca actcctggct 1501 aacagctata gcgcaggaaa aagggccatg tatcacaaag ccattgcatc cctgaaaaca 1561 accccctatc agcagaggga tgccaatgtg caagctttcc tcaagaagga aaaacattgg 1621 atgaccaagg acatcgctcc ccgattgata tgcccccgca gcaagcggta caacattatc 1681 ctaggaactc gtttgaaatt caacgagaag aagatcatgc acgccatcga tagtgtgttt 1741 ggatccccca ctgtgctttc tggttatgat aacttcaagc aaggaagaat catagccaag 1801 aagtggcaaa agtttgcatg ccccgtcgct atcggcgtgg atgctagccg ctttgaccaa 1861 cacgtgtcag agcaggcgct taagtgggaa cacgggatat acaatggaat cttcggtgat 1921 agcgaattgg ctcttgcact tgaacaccaa atatccaaca acatcaaaat gttcgtagag 1981 gacaaaatgc ttaggttcaa ggttagaggc catagaatgt ccggtgacat taacaccagc 2041 atgggaaaca agctaataat gtgcggcacg atgcacgcat atttcaagaa gctgggtgtt 2101 gaagcagaac tatgcaacaa tggagacgac tgtgtcatca tcactgacag agccaatgag 2161 aagctctttg atggcatgta cgatcacttt ctccagtatg gtttcaacat ggtgaccgaa 2221 aaaccagttt acgaactgga acaattggag ttttgccagt caaaaccggt ctctattaat 2281 ggaaaataca gaatggtcag aaggcccgat agcataggca aagacagcac aacactactg 2341 agcatgctca accaatccga cgtcaaaagt tacatgtcgg ctgtggctca gtgtggtttg 2401 gtgcttaacg ctggagtacc catactcgaa agtttctata aatgcctata tagaagctct 2461 gggtacaaga aagtgagtga tgaattcatc aaaaacgtca tttcgtatgg aacagataag 2521 agactacaag gtagacgtac ctttgaagac acacctatca ccaatcatag caggatgtcc 2581 tactgggaat cattcggagt tgaccctaag atacaacaaa ttgtcgagcg gtactacgac 2641 aatcttacgg tgagtgccca actccagagc gtgaaggtga ctactccaca tctgcaatca 2701 atactacttt ccataccgga aaaccactca caaaacgact attaattacc aaatcttagc 2761 tgggtttgga atagggttta tagtttctat tccctgtaca ttagctctct cctactttat 2821 ctacaataaa gtttctgaca ccactaggga ggtagtgaat gaattcagta ggccgtagaa 2881 ataaccgcag gagaaatggc ccaaggagag caaggcgcgc tggcgcagtt cggagaatgg 2941 ttgtggtcca acccaatcga gccggaccaa aacgaagaac tcgtcgacgc acaagaggag 3001 gaggggcaaa tcttatatct ggaccagcag gcaggactga ggtattcgta ttctcagtca 3061 acgaccttaa ggccaactcc tcagggacaa tcaagttcgg tcccgacctt tcgcaatgcc 3121 cagcgctttc aggtggaata ctcaagtcct accaccgtta caagatcaca aacgtcaagg 3181 ttgagtttaa gtcacacgcg tccgcctcta cagtcggcgc aatgtttatt gaactcgaca 3241 cttcgtgctc acaatcaacc ttgggtagct acattaactc attcaccctc tcaaaatcag 3301 caaccaaaaa cttcaccgcc caacagattg acgggaagga attcagggag agctcggtga 3361 atcaatttta tatgctatac aaggcaaatg gtagtacatc tgataccgcc gggcaattca 3421 tcattacaat acgcgttgcc aacatgactc ccaaataggt agactcctca acaccagagc 3481 ctacacccca accccaacca gagcccaaac ctgatccgca gccaacacca gagcctcaac 3541 acaaacggtt tttcgagtac gtaggaacgc cctatgttat catacaaact agggagagtt 3601 cggatagcat tgccgtcaag tcaatgaatg atcaatcctt tcagtacatc gaaaacgaaa 3661 cttctgagca aagaaccgtt caggcatggc ggacctccaa caacggcgtc caagcgcaag 3721 cagcatttgt atttcctata cccgctggag agtatagtgt taatatttct tgtgaaggtc 3781 tacaatcagt ggaccacatt ggaggaaacc gagacggata ttggataggc ttaatagcct 3841 accaaaatca aagcggggat tattggggcg tgggcaacta tgctggctgt gatataacca 3901 atcttctagg aacaaacact tggcgtccag gccatgaaga tttggaatta gacggctgca 3961 aattcactaa tggacagata gttgaaagag acgctgtgat atccttccat gttaaagctc 4021 agggtgctga ccccaagttt tacctcatgg cacccaagac catgaagtct gacaagtata 4081 actatgtcgt gtcttatgga ggttacacag acaaaagaat ggaatttgga tccatatctg 4141 tcactgtgga tgaatctgat gttgaggcac agcgctacaa caggcacact agtacggttg 4201 ggaaagcaga aaaccgagat tatgggtgga tgagtgttct accaccctat gatcctaacc 4261 aagtgccgga gcaagaggaa gaacaaccaa tggttgacaa ggagatggat tcgagacctc 4321 ctgtcgaacc cccttcccca acctccgaca ctgaggctga aagagccttt gacttgagag 4381 aggaagaact tacgagggcc agacttgaat acgaggcagc cactgaatcc atacctgatg 4441 ctgccccgga cgttttaccc tcaaaatctg aaatgagcag tagaccaata gaccatgatg 4501 gaaggtcttt accaaaacct cagtcaaaag aagtcctcgg cacataccaa ggccagaaca 4561 tcacaccaga tgatgttcct cctgtcatag ctgaaaaatt gcgtgaagtg aacagagcac 4621 catctactct gctttacgac aggcagccaa aaacaccaaa aagctttctt tcccgtttcg 4681 tagaaaccaa taaaactagc ttggcttccc ctggttcaca gtcttccaca tcaggaatga 4741 caagagaaca agcctcagaa tacaccagga ttaggaagtc aatgggcctc acggcagcta 4801 aggagtacaa agccagttta gctgacacat ggtgaagatc aacaccactc gcaaattcgg 4861 atcctgggaa acaggcagaa cttcggttcg taagctcggg taaactagtc ctttaccgtc 4921 gtatcgtact ttgtgtggcc gatggatgat ctacatgtga tagcagtctg tgtgctgtcc 4981 acgacagtgt tcgcagcggc agtactcaca attagcgcaa ttgctagtat ttgcggcagt 5041 gcatgtgcaa ctgccaacat tcaaagggtt taatctgtga tacaacccac caaaatacac 5101 ggggaacaac aggttcagcg agggggctaa cgacccccag caattggctg gttctgggag 5161 acttaaatga cctcctatag aacgaagtgg aatcccccca ctgatcaaat tgggaagcat 5221 gcttctgtgc tatacactgc cccagaggac actgggtaaa caaatctaac cacccaactc 5281 aatgaaatga gagcggaggt ggcggggtgg gtgacctcgt gatgtgcacc cgatcgtcag 5341 gattgaagac gttaaaactc aacgacctag tgcaagtcgt taaactgact cgggtggata 5401 caccacaccc ggcccaactt ggaggcatac ccacgatacg aaacgtgggt ttcttggagc 5461 cactacctgt gatgcaaggt agggtatggg tcttagcaag ccctgcgcca ggaaatggac 5521 ataaaccata gcaatccccc aagtcatctc ggcaaaccac aggtgaaccg tgccacaggc 5581 ctgactaccg aaaggaaaat cagtatccaa cacagcaatg tgttgggggt cacacccttc 5641 ggggtactct taacgctgac actcgaaaga gcagttcggc aaccc //