CDS-plotcon: Programme for Detecting Enhanced Conservation in Coding Sequences

Please use the following login details if requested. Note that these will only allow access to public parts of this site. If you get an 'access denied' error then you are probably trying to access a non-public part. Please contact me (aef24cam.ac.uk).

• Site 1: In general, use this site first. You may input raw unaligned sequences. It takes a while to run, so the results will be emailed to you. When you have the results, you can use Site 2 to redo the plots with different windowing/clipping/range parameters or to obtain the raw plot data in case you wish to redo the plots using a different graphics programme. You may enter up to 15 sequences of up to 20000 nt each.
  
  
• Site 2: Use this site if your sequences are already aligned and you have generated a phylogenetic tree. Results are delived to your webbrowser and you have the option to redo the plots on the fly, with different windowing/clipping/range parameters. You may enter up to 50 sequences of up to 35000 nt each.