==> CLUST_1.aln <== CLUSTAL 2.1 multiple sequence alignment Acidovorax_ebreus_TPSY GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAC- Neisseria_bacilliformis_ATCC_B GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAA- Bibersteinia_trehalosi_USDA-AR GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAA- Haemophilus_felis GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAA- Neisseria_arctica GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAA- Neisseria_meningitidis_Z2491 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAA- Sedimenticola_thiotaurini GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAA- Comamonas_granuli_NBRC_101663 GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACACT Neisseria_wadsworthii_9715 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAA- ******* * *** *** * ** * **** ==> CLUST_11.aln <== CLUSTAL 2.1 multiple sequence alignment Flavobacterium_filum_DSM_17961 GTTGTGGTTTGATTAAAGATTTGAAAACACGATAT Flavobacterium_branchiophilum_ GTTGTGGTTTGATTAAAGATTAGAAAACACGATAT Flavobacterium_columnare_ATCC_ GTTGTGGTTTGATTAAAGATTAGAAAACACGATAT Lutibacter_profundi GTTGTGGTTTGATTAAAGATTAGAGAAAACGATAT Cloacibacterium_normanense GTTGTGGTTTGATTAAAGATTAGAAAAAACGATAT ********************* ** ** ******* ==> CLUST_12.aln <== CLUSTAL 2.1 multiple sequence alignment Haematospirillum_jordaniae GTTGCTGCTTGACCGCAATTTCTGAGATGCTAGTC Sphingomonas_paucimobilis_NBRC GTTGCCGCTGGACCGCAATCTCTGAGCGGCTATGC Sphingomonas_changbaiensis_NBR GTTGCGGTTGGCCTGCGATTTCTGAGCTGCTAGGC ***** * * * * ** ** ****** **** * ==> CLUST_14.aln <== CLUSTAL 2.1 multiple sequence alignment Lacinutrix_jangbogonensis GTTGTGAATTGATTTCA---AATTGTATTTTTACG-TGAGCAATCACAA- Zunongwangia_profunda_SM-A87 GTTGTGAATTGCTTTCAGAATT--GTACTTTTAGTACTG-GATTCACAG- Weeksella_virosa_DSM_16922 GTTGTGAATTCCTTTCAAATTTTTGTAGATTTACTCAGTAGAATTACAA- Bacteroides_coprosuis_DSM_1801 GTTGTGAATTGCTTTCAAAACTTAGTATCTTAGA---TACCAGCAACAA- Bacteroides_propionicifaciens_ GTTGTGAATTGCTTTCAAAATGAGGTATCTTTGA---TATCAGTAACAA- Capnocytophaga_gingivalis_ATCC GTTGTGAATTGCTTTCAAA--TTCGTAACTTTGT---GATCTCAAACAA- Capnocytophaga_ochracea_DSM_72 GTTGTGAATTGCTTTCAAATTTTG-TAGTTTTGC---GATTGATAACAA- Myroides_phaeus GTTGTGAATTGCTTTCAAATTATTGTATTTTTAT--CGTGTAATCACACA Riemerella_columbipharyngis GTTGTGAATTGCTTTCAATTTTTACTATCTTTGC---GATAGTTCGCAA- Algoriphagus_antarcticus GTTGTGAATTGCTTTCAAA--ATG-TATCTTTCCA-GTGGAAATCACAG- Algoriphagus_marinus GTTGTGAATTGCTTTCAAA--ATG-TATCTTTCCA-GTGGAAATCACAG- Alkalitalea_saponilacus GTTGTGAATTGCTTTCAAA---TTGTATCTTTGAA-ATATTGGTAACAG- Lunatimonas_lonarensis GTTGTGAATTGCTTTCAAA--ATTGTACCTTAAGG-G-GTAAATCACAG- Roseivirga_spongicola GTTGTGACTAGCTTTCAAA---TTGTATCTTAGAAGAA------------ Algibacter_aquaticus GTTGTGAATTGCTTTCAG--AATTGTATTTTTAC--TTAGCATTCACAG- Belliella_baltica_DSM_15883 GTTGTGAATTGCTTTCAAA--TTGATATCTTCCCA-A-GGGAATCACAG- Indibacter_alkaliphilus_LW1 GTTGTGAATTGCTTTCAAA--TTGATATCTTCCCA-A-GGGAATCACAG- Myroides_odoratus_DSM_2801 GTTGTGAATTCCTTTCAAATTTT-GTAGATTTAGTCCTACGAATTACAA- Chryseobacterium_indologenes GTTGTGAATTGCTTTCAAAAATTATTATCTTCGT---GATTAGTCACAG- Kordia_algicida_OT-1 GTTGTGAACTGCTTTCA---TTTTGTAATTTTACG-TGAGCAATCACAA- ******* ***** ** ** Lacinutrix_jangbogonensis - Zunongwangia_profunda_SM-A87 - Weeksella_virosa_DSM_16922 - Bacteroides_coprosuis_DSM_1801 - Bacteroides_propionicifaciens_ - Capnocytophaga_gingivalis_ATCC - Capnocytophaga_ochracea_DSM_72 - Myroides_phaeus G Riemerella_columbipharyngis - Algoriphagus_antarcticus - Algoriphagus_marinus - Alkalitalea_saponilacus - Lunatimonas_lonarensis - Roseivirga_spongicola - Algibacter_aquaticus - Belliella_baltica_DSM_15883 - Indibacter_alkaliphilus_LW1 - Myroides_odoratus_DSM_2801 - Chryseobacterium_indologenes - Kordia_algicida_OT-1 - ==> CLUST_15.aln <== CLUSTAL 2.1 multiple sequence alignment Mycoplasma_gallisepticum_str._ GTTTTAGCACTGTACAATACTTGTGTAAGCAATAA Mycoplasma_canis_PG_14 GTTTTAGTGTTGTACAATATTTGGGTAAACAATAA Mycoplasma_cynos_C142 GTTTTAGTGTTGTACAATATTTGGGTAAACAATAA ******* ********* *** **** ****** ==> CLUST_16.aln <== CLUSTAL 2.1 multiple sequence alignment Anaerococcus_tetradius_ATCC_35 GTTTGAGAGTTATGTAA-TTTAAGTAGTAAGTAAAA Caviibacter_abscessus GTTTAAGAGTTATGTAAATTTAAATAG-GTATAAAA Lagierella_massiliensis GTTTGAGAGTTATGTAATTTCATATAG-GACTAAAA Traorella_massiliensis GTTTTAGAGTTATGTTATTTTGAATAG-ATCCAAAA Filifactor_alocis_ATCC_35896 GTTTGAGAGTAGTGTAATTTCATATGGTAGTCAAA- Treponema_denticola_ATCC_35405 GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAA- Acidaminococcus_intestini_RyC- GTTTGAGAGATATGTAAATTCAAAGGATAATCAAA- Campylobacter_fetus_subsp._fet GTTTGAGAGTTGTGTAAATTTGAATGG-TAGTAAAA Peptoniphilus_obesi_ph1 GTTTGAGAGTTATGTAATTTCATATAG-TACTAAAA Clostridium_cocleatum GTTTTAGAGTTATGTAATTTAGAATAG-TAGCAAAA **** **** *** * ** *** ==> CLUST_21.aln <== CLUSTAL 2.1 multiple sequence alignment Lachnoclostridium_phocaeense GTTTGAGAGTAGTGTAAATCTATAGGGTAATGAAA Treponema_putidum GTTTGAGAGTAGTGTAATTTAAGATGGATC----- Veillonella_atypica_ACS-134-V- GTTTGAGAGTAGTGTAATTCTGTAAATCTCTAAAA ***************** * * ==> CLUST_22.aln <== CLUSTAL 2.1 multiple sequence alignment Lactobacillus_amylolyticus GTTTTAGATGATTGTTAGATCAATAAGGTTTAGAT Lactobacillus_jensenii GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAA Bifidobacterium_bifidum_S17 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCA Oenococcus_kitaharae_DSM_17330 GCTTCAGATGTGTGTCAGATCAATGAGGTAGAACC Lactobacillus_kullabergensis GTTTTAGATGATTGTTAGATCAATGATGATTAGAA Lactobacillus_zymae GTTTTAGATGAGTGGTAAATCTAGAAGGTCAAAAG * ** *** * ** * *** * * ==> CLUST_24.aln <== CLUSTAL 2.1 multiple sequence alignment Rhodopseudomonas_palustris_Bis GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGC Tistrella_mobilis_KA081020-065 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGT Methylosinus_trichosporium_OB3 GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGC ******* ****** ******* ** ******** ==> CLUST_25.aln <== CLUSTAL 2.1 multiple sequence alignment Ruminococcus_lactaris_ATCC_291 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAA Finegoldia_magna_ATCC_29328 GTTTGAGAATGATGTAATTTCATATAGGTATTAAA Finegoldia_magna GTTTGAGAATGATGTAATTTCATATAGGTATTAAA Helcococcus_sueciensis_DSM_172 GTTTGAGAATGATGTAATTTCATATAGGTATTAAA ***************** *** * * *** ==> CLUST_26.aln <== CLUSTAL 2.1 multiple sequence alignment Actinomyces_meyeri GCTGGGAATCAATCACCAATCCCCTTTGATATACT- Actinomyces_turicensis_ACS-279 GCTGGGAATCAGTTACCAGAACTCT-TGATATTCTT Actinomyces_coleocanis_DSM_154 GCTGGGAATCAGTC-TTAATTCCCTCTGATATACTT *********** * * * ** ****** ** ==> CLUST_30.aln <== CLUSTAL 2.1 multiple sequence alignment Bacteroides_coprophilus_DSM_18 GTTGTGATTTGCTTTCATTTTA--GTAACTTTGCATAAGAACTTACAG Joostella_marina_DSM_19592 GTTGTGAATTGCTTTCAGAATT--GTATTTTTAA-TCATGATTTACAG Flavobacterium_psychrophilum_J GTTGTGAATTGCTTTCAAAATT--GTATTTTAGC-TTATAATTACCAA Mucilaginibacter_paludis_DSM_1 GTTGTGATTTGCTTTCAATCTTT-AAACAACTGATATTTGGAACAA-- Chryseobacterium_molle GTTGTGAATTGCTTTCATTTTTCCGTATCTTTGAGATACAACACAA-- Capnocytophaga_canis GTTGTAAATTGCTTTCAATTTTTCGTAACTTTG--TGATTAGTTACAA Chitinophaga_costaii GTTGTGATTTGCTTTCATTTTATTATGTAGTTTCGCTTTTAAACAA-- Chryseobacterium_arachidis GTTGTGAATTGCTTTCATTTATCCGTATCTTTGAGATACAACACAA-- Bacteroides_fluxus_YIT_12057 GTTGTGATTTGCTTTCATT--TTAGTATCTTTGAACCATTGGAAACAG Bacteroides_nordii_CL02T12C05 GTTGTGATTAGCTTTCAA--ATTAGTATCTTTAACAG----------- Coprobacter_fastidiosus_NSB1 GTTGTGATTTGCTTTCATT--TTAGTATCTTTGAAGTATCGGAAACAT ***** * * ******* ==> CLUST_31.aln <== CLUSTAL 2.1 multiple sequence alignment Clostridium_perfringens_D_str. GTTATAGTTCCTAGTAAATTCTCGATATGCTATAA Clostridium_colicanis_DSM_1363 GTTATAGTTCCTAATAAATTTTCGATATGCTATAA Clostridium_amylolyticum GTTATAGTTCCTAGTAAATTCTCCATATGCTATAA ************* ****** ** *********** ==> CLUST_33.aln <== CLUSTAL 2.1 multiple sequence alignment Nonomuraea_maritima --GCTCCCCGCGCACGCGGGGATGGTCC Streptomyces_yeochonensis_CN73 GTCCTCCCCGCGCCCGCGGGGGTAGTC- Actinomadura_rubrobrunea_NBRC_ GTCGGCCCCGCACACGCGGGGATGGTC- Streptomyces_catenulae GTCGGCCCCGCGGATGCGGGGATGTTC- ****** ****** * ** ==> CLUST_39.aln <== CLUSTAL 2.1 multiple sequence alignment Dinoroseobacter_shibae_DFL_12_ GTTGCGGCTGGACCCCGAATTCTGAACAGCTAAAC Marinovum_algicola_DG_898 GTTGCGGCTGGACCCCGAATTCTGAACAGCTAAAC Skermanella_aerolata_KACC_1160 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAA Sphingomonas_soli_NBRC_100801 GTTGCTGTTGGCCCGCGATTTCTGAACTGCTAGGC Insolitispirillum_peregrinum GTTGCGGGTTGACCGCATTTTCTGAACAGCTAAGA Azospirillum_sp._B510 GTTGCGGCTGGACCCCCGATCCCCATCGGCTACAC Rhodovulum_sulfidophilum GTTGCGGCTGGACCTCGAATTCTGAACGGCTAAAC Shimia_marina GTTGCGGCTGGACCTCGAATTCTGAACTGCTAATC Sphingomonas_sanxanigenens_DSM GTTGCCGCTGGACCGCGATCTCTGAACAGCTATGG ***** * * * ** * * * * **** ==> CLUST_4.aln <== CLUSTAL 2.1 multiple sequence alignment Staphylococcus_massiliensis_CC GTTTTAGTACTCTGTAATTTTA-GGTATAAGTGATT- Staphylococcus_lugdunensis_M23 GTTTTAGTACTCTGTAATTTTA-GGTATAAGTGATA- Veillonella_magna_DSM_19857 GTTTTAGTACTCTGTAATCTTGTAGTATGATAAAT-- Paraliobacillus_ryukyuensis GTTTTAGTACTCTGTGTTTTTA-GGTAGTAATGAGA- Staphylococcus_aureus_M0408 GTTTTAGTACTCTGTAATTTTA-GGTATGAGGT---- Staphylococcus_lutrae GTTTTAGTACTCTGTTATTTTA-GGTATAAGTGATAC Staphylococcus_simulans GTTTTAGTACTCTGTAATTTTA-GGTATGAGTGATT- *************** * ** *** * ==> CLUST_41.aln <== CLUSTAL 2.1 multiple sequence alignment Rodentibacter_pneumotropicus_D GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAA Kingella_kingae_Vir5453 GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAA Necropsobacter_massiliensis GTTGTAATTCCCATCTATATTTCGCAGTGTTATAA Pasteurella_multocida_subsp._m GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAA ****** **** ******** ** ** ** ==> CLUST_42.aln <== CLUSTAL 2.1 multiple sequence alignment Helicobacter_pullorum_MIT_98-5 GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAA Helicobacter_muridarum GTTTTAGCCACTTATTAAATCATTCTATGCTAAAA Campylobacter_jejuni GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAA ******* * *** ****** * **** ***** ==> CLUST_45.aln <== CLUSTAL 2.1 multiple sequence alignment Lactobacillus_curvatus GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAA Lactobacillus_apinorum GTTTTAGAAGTATGTTGAATCAATGAGGTTTAGTA Lactobacillus_fuchuensis_DSM_1 GTTTTAGAAGAGTATCAAATCAATGAGTTCATCAA Pediococcus_damnosus GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAG Lactobacillus_paracollinoides GTTTTAGATGAATATCAAATCAATGAGGTTCAAAG Lactobacillus_rennini_DSM_2025 GTTTTAGAAGAGTATCAAATCAATGAGTTTATCAA ******** * * * ******* ==> CLUST_5.aln <== CLUSTAL 2.1 multiple sequence alignment Streptococcus_agalactiae_2603V GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAA Streptococcus_pseudoporcinus_L GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAA Halolactibacillus_miurensis GTTTTAGAGCTGTGTTGATTTGAATGATTCCGAAA Streptococcus_macacae_NCTC_115 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_mutans_UA159-FR GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_mutans_UA159 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_ovis_DSM_16829 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_plurextorum_DSM_ GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_ratti_FA-1_%3D_D GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_sanguinis_SK49 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_thermophilus_LMD GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_varani GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA Streptococcus_pantholopis GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAA Streptococcus_pyogenes_M1_476 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAA Streptococcus_pyogenes_M1_GAS GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAA Vagococcus_fluvialis_bH819 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAA Vagococcus_teuberi GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAA Urinacoccus_massiliensis GTTTTAGAGCTATGTTGTTTTGAATAGTACTTAAA Streptococcus_dysgalactiae_sub GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAA *********** ** * ** **** * * *** ==> CLUST_6.aln <== CLUSTAL 2.1 multiple sequence alignment Streptococcus_equinus GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAA---- Streptococcus_marimammalium_DS GTTTTTGTACTCTCAAGATTTAAG--------------- Enterococcus_faecalis_TX0012 GTTTTTGTATTCTCAATAATTTCTTATCAGTAAAACAGA Streptococcus_intermedius_B196 GTTTTTGTACTCTCAAGATTTAAGTAACTGCAAAA---- Streptococcus_gordonii_str._Ch GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAA---- Streptococcus_thermophilus_JIM GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAA---- Streptococcus_thermophilus_LMD GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAA---- Streptococcus_henryi_DSM_19005 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAA---- Lactobacillus_nodensis_DSM_196 GTTTTAGTACTCTCAAGAATTTAGTAACAGTAAAA---- ***** *** ****** * ** ==> CLUST_7.aln <== CLUSTAL 2.1 multiple sequence alignment Verminephrobacter_eiseniae_EF0 GTTCCGGCCAGTGCGCATATCCCAGTGAGCTACAA Alicycliphilus_denitrificans_K GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAA Acidovorax_avenae_subsp._avena GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAC **************************** *** * ==> CLUST_8.aln <== CLUSTAL 2.1 multiple sequence alignment Catenibacterium_mitsuokai_DSM_ GTTTTAGGGTTATGTTATTTTGAACTGAATTAAAA Listeria_innocua_Clip11262 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAA Kandleria_vitulina_DSM_20405 GTTTTAGAGTTGTGTTATTTTGAAC---------- Sharpea_azabuensis_DSM_18934 GTTTTAGAGTTGTGTTATTTTGGACTGAACTAAAA ******* * * ********** *