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Contents
Contents
CDS-plotcon - a.k.a. MLRGD
(software notes)
Andrew E. Firth
Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand
Contents
Introduction
Installation
Example
Required software and files
Input files
Output files
Error log file
Parameters
redo_mlrgd
and
redo_plots
Run time
Maximum number/length of sequences
Algorithms
Overview
Notes
Mutation model
Substitution matrices
Nucleotide substitution matrix
Codon usage table
Amino acid substitution matrix
References
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aef 2007-12-10
